|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 826 fasta sequence
[TAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATTGTAGACGGGGATTTTCGAAATTACAAGTAGGAGATTGGGAATTTCGCACAAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTATTGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTGACGACATTTGAGGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAATAGCTTCCTTGACAGTGACTAAAACAACCTCTGAAGAATCAAGACCCTTAGGTGTAGAAGATGTCAGCATGGGCATGTC]
[+] EMBL CD178577 [TAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATTGTAGACGGGGATTTTCGAAATTACAAGTAGGAGATTGGGAATTTCGCACAAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTATTGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTGACGACATTTGAGGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGA ]
[+] EMBL CD167560 [ AAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTATTGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTGACGA ]
[+] EMBL CD124758 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGACGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGCTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ]
[+] EMBL CD124668 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTTTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGTGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ]
[+] EMBL CD124715 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGCAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGTAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ]
[+] EMBL CD124742 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCCGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACGTTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ]
[+] EMBL CD124667 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACACCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ]
[+] EMBL CD124695 [ GGAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTGACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAAGGCTGATTAGATGGATATGAAGATGAAGATGGAGAAGAGACTTTCAAAGGAGTTGCAGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTGTTAGCTTACACCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAAT ]
[-] EMBL CD124830 [ GAGTGACTGGCATGCCATCAACGGTAATGGATGCACAGTGGAGAGTATTGGGGTAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGT ]
[-] EMBL CD116376 [ CGATGTGTTTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAATAGCTTCCTTGACAGTGACTAAAACAACCTCTGAAGAATCAAGACCCTTAGGTGTAGAAGATGTCAGCATGGGCATGTC]
consensusID : consensus_10074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence
[CAATTGGTTCACACAGAATCTGGTCCAAAACTATATTCGGAGCATTTGTCGAATCTAAAATCTGCTCCACTACATCAGGTTCAGTCATACGATTAGTAGGTGGGTTATTCGGACTAAAAGACAGTGATTTTACATTAGAATAGACATTATTTTGTGAGAATTCCTGCTGTTCCTGCAAAGACACGCTATTCACAATTTCACATGATAACTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTGACTGGTTTGACACGGGAAGAGAATATAGAGACTGGATATGAGCATCACCCGAAGGGTTAATCGAACGGGTTTTGTTCACAGATAAACATCGTTCATTATGGAACAACGGCATATTACTATTGGATGTATTTTCAAAGGGTCTATTGATTTGGTTTGACATACGGATAAATGAATGAGGTTTCTGCTCGAAGCTTTTAAGGACTGGGTGGTTGAATAACATACTATCAGTGTCTTCCGAGACACAAC]
[+] EMBL CD190808 [CAATTGGTTCACACAGAATCTGGTCCAAAACTATATTCGGAGCATTTGTCGAATCTAAAATCTGCTCCACTACATCAGGTTCAGTCATACGATTAGTAGGTGGGTTATTCGGACTAAAAGACAGTGATTTTACATTAGAATAGACATTATTTTGTGAGAATTCCTGCTGTTCCTGCAAAGACACGCTATTCACAATTTCACATGATAACTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTGACTGGTTTGACACGGGAAGAGAATATAGAGACTGGATATGAGCATCACCCGAAGGGTTAATCGAACGGGTTTTGTTCACAGATAAACATCGTTCATTATGGAACAACGGCATATTACTATTGGATGTATTTTCAAAGGGTCTATTGATTTGGTTTGACATACGGATAAATGAATGAGGTTTCTGCTCGAAGCTTTTAAGGACTGGGTGGTTGAATAACATACTATCAGTGTCTTCCGAGACACAAC]
consensusID : consensus_10074#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence
[TACATCAGTTTCATTAGGGTTATAGTTNTGATATTCTGACTGGACGTATGAGGAATGATAAGTTGGTTCTGAATGTAAGGATGATGGATTAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTG]
[-] EMBL CD070558 [TACATCAGTTTCATTAGGGTTATAGTTNTGATATTCTGACTGGACGTATGAGGAATGATAAGTTGGTTCTGAATGTAAGGATGATGGATTAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGATTAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCACTATGATCATGTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAACTG]
consensusID : consensus_10074#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 141 fasta sequence
[AGCCCGGTACCCGAGTTTTTAAAGGAGCTGCGGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTG]
[+] EMBL CD168089 [AGCCCGGTACCCGAGTTTTTAAAGGAGCTGCGGCTTCTTGCTGACCCCATGTGGAAGCATTATTAGGACCAACACTGCAACTGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTGCTTGGTAGTGACGATGTGTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10074#0 TAAATGAATACTGACACATCTGTTGAACGTCACTTTGCTGATAACTGAACATTACCTGAT 60
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 ------------------------------------------------------------
consensus_10074#0 TAGACGTTAAATCATTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAACTTT 120
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 ------------------------------------------------------------
consensus_10074#0 GCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAGCAC 180
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 ------------------------------------------------------------
consensus_10074#0 TATGATCATGTGAATATTGTAGACGGGGATTTTCGAAATTACAAGTAGGAGATTGGGAAT 240
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 ------------------------------------------------------------
consensus_10074#0 TTCGCACAAAGCTAGTACTGTGAGGATAAGATGAATGACCATGCAGAAGTTGACTGGTAT 300
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 ------------------------------------------------------------
consensus_10074#0 TGTTTATACGAGCATTCTTATTTGACTTCAAAGGTAACGTTTGATATGATCCGACGACTG 360
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 --------------CAATTGGTTCACACAGAATCTGGTCCAAAACTATATTCGGAGCATT 46
consensus_10074#0 ACGACATTTGAGGAGTGACTGGCATGCCATCAACGGTAATG----GATGCACAGTGGAGA 416
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 -------------------------TACATCAGTTTCATTA----GGGTTATAGTTNTGA 31
consensus_10074#1 TGTCGAATCTAAAATCTGCTC-CACTACATCAGGTTCAGTCATACGATTAGTAGGTGGGT 105
consensus_10074#0 GTATTGGGATAACTGCCAGACAGTTGGTCACGAGAATCATGATCAGAGAATTGTTCATTG 476
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 TATTCTGACTGGACGTATGAGGAATGATAAGTTGGTTCTGAATGTAAGGATGATGGATTA 91
consensus_10074#1 TATTCGGACTAAAAGACAGTGATTTTAC-ATTAGAATAGACATTATTTTGTGAGAATTCC 164
consensus_10074#0 ACAATTTGTTCTGTAACCTGGTTATCAAAAATACTAGGAGTTGAGTGATTTGTTCCAGAA 536
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 AATGAATACTGACACATCTGTTGAACGTCACT--TTGCTGATAACTGAACATTACCTGAT 149
consensus_10074#1 TGCTGTTCCTGCAAAGACACGCTATTCACAATTTCACATGATAACTGAATATCATTGTCC 224
consensus_10074#0 GGCTGATT-AGATGG--ATATGAAGATGAAGATGGA-GAAGAGACT---TTCAAAGGAGT 589
consensus_10074#3 ----------------------------AGCCCGGT-ACCCGAGTT---TTTAAAGGAGC 28
consensus_10074#2 TAGACGTT-AAATCA--TTAGACACATAAGAATTATGACTTGAGTAAAATGGAACAGAAC 206
consensus_10074#1 AATGTGTTTGGATCACGTTGGTAATAATGAACTGACTGGTTTGACAC--GGGAAGAGAAT 282
** **
consensus_10074#0 T--GCAGCTTC--TTGCTGACCCCATGTGGAAGCATTATTAGGACCAAC---ACTGCAAC 642
consensus_10074#3 T--GCGGCTTC--TTGCTGACCCCATGTGGAAGCATTATTAGGACCAAC---ACTGCAAC 81
consensus_10074#2 TTTGCTGATTCACTGACTGATCATCTGAAGATCTATACATAGAAGTAATCTGGTTGGAAG 266
consensus_10074#1 ATAGAGACTGGATATGAGCATCACCCGAAGGGTTAATCGAACGGGTTTTGTTCACAGATA 342
* * * * * * * * *
consensus_10074#0 TGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTG---CTTGGTAGTGACGATGTGT 699
consensus_10074#3 TGCTGCTACTGCTCCAACATTCATGTCCAGAGTCAGTG---CTTGGTAGTGACGATGTGT 138
consensus_10074#2 CACTATGATCATGTGAATATCATTGTCCAATGTGTTTGGATCACGTTGGTAATAATGAAC 326
consensus_10074#1 AACATCGTTCATTATGGAACAACGGCATATTACTATTGGATGTATTTTCAAAGGGTCTAT 402
* * * * ** * * *
consensus_10074#0 TTGTTAGCTTACATCCAGTTATTCCAGTGGGAGATTTCGATTCAGAAATAGCTTCCTTGA 759
consensus_10074#3 TTG--------------------------------------------------------- 141
consensus_10074#2 TG---------------------------------------------------------- 328
consensus_10074#1 TGATTTGGTTTGACATACGGATAAATGAATGAGGTTTCTGCTCGAAGCTTTTAAGGACTG 462
*
consensus_10074#0 CAGTGACTAAAACAACCTCTGAAGAATCAAGACCCTTAGGTGTAGAAGATGTCAGCATGG 819
consensus_10074#3 ------------------------------------------------------------
consensus_10074#2 ------------------------------------------------------------
consensus_10074#1 GGTGGTTGAATAACATACTATCAGTGTCTTCCGAGACACAAC------------------ 504
consensus_10074#0 GCATGTC 826
consensus_10074#3 -------
consensus_10074#2 -------
consensus_10074#1 -------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||