cluster # 10094

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Schistosoma mansoni
cluster # 10094 cluster # 10094 Sequences # 13 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10094#0 length = 834 sequences # 11

consensus_10094#1 length = 399 sequences # 1
consensus_10094#2 length = 188 sequences # 1

consensusID : consensus_10094#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 834
fasta sequence

                              [GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATTACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC-TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT-CCTCTTTCTTCAGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGGTTNGCAGNATTNNTGNCTGGTC-TTG-AATATA-TTCTACACATGTATACCGGT-AATCGA-TAANTNNCTTTATT]

[+] EMBL CD081946             [GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATTACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGNCATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCTNCCTC TTCTTCAGCTNTT AAAATGACAAAAAATGTACCTTAAGCTACTGNTAGTGGTTNGCAGNATTNNTGNCTGGTC TTG AATATA TTCTACACATGTATACCGGT AATCGA TAANTNNCT     ]
[+] EMBL CD082864             [                                                                                                                                 TCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGNCATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCC                                                                                                                                            ]
[+] EMBL CD187528             [                                                                                                                                                                                                  ctttTTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATGCTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAA                                                                                                                                                                                                                                                                          ]
[+] EMBL CD191524             [                                                                                                                                                                                                                   CTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD185279             [                                                                                                                                                                                                                   CTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACCGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT CCTCTTTCTTCAGCTTTT                                                                                                                   ]
[+] EMBL CD185400             [                                                                                                                                                                                                                   CTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGACCACTATTTTGAATAGCTTATCAGTTTTCCTCAATTTCCCTTTCT CCTCTTTCTTCAGCTT                                                                                                                     ]
[-] EMBL CD076450             [                                                                                                                                                                                                                        GTAACACCATGGCNTGCATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT CCTCTTTCTTCAGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGCCAGTATTTTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTAAAT TCCTTATT]
[-] EMBL CD139755             [                                                                                                                                                                                                                                        CATTAATTCAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTAATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACATTATTATTTGTATAACTGGCGTTGTCCATTCACTAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD138193             [                                                                                                                                                                                                                                                                                                                                                                                                  ATTCACTTAGCCCTCTGAGATTGGAATAGTATTACAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAAC TTTACAAACCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTATCTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATGAGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCT CCTCTTTCTTCAGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTgtctc                                                                             ]
[+] EMBL AA952772             [                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCACGCTTTAATGTATTATATAC  TCTGTTCAGTGAACTTTTACAAACC                                                                                                                                                                                                                                                                                                          ]
[+] EMBL SMAA98641            [                                                                                                                                                                                                                                                                                                                                                                                                                                           TGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAATTTGCAAATCTTTTCAGGCTTTAATGTATTATATAC  TCTGTTCAGTGAACTTTTACAAACC                                                                                                                                                                                                                                                                                                          ]




>consensus_10094#0
GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATT
ACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACA
GACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGC
CTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATT
CAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTA
ATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACAT
TATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTA
CAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAA
TTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAACTTTACAAA
CCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTAT
CTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATATG
AGCACTATTTTGAATAGCTTATCAGTTTTCCTCGATTTCCCTTTCTCCTCTTTCTTCAGC
TTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGGTTNGCAGNATTNNTGNC
TGGTCTTGAATATATTCTACACATGTATACCGGTAATCGATAANTNNCTTTATT

consensusID : consensus_10094#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 399
fasta sequence

                              [TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTACAAAAGAAGAATTTCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGTTGAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGTTTGACGTATTCATGCTTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTNGCATCGNAGACGGNGATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA]

[+] EMBL CD195960             [TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTACAAAAGAAGAATTTCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGTTGAGAGTGGAGATGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGTTTGACGTATTCATGCTTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTNGCATCGNAGACGGNGATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA]




>consensus_10094#1
TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTACAAAAGAAGAATT
TCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGTTGAGAGTGGAGA
TGGCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAA
ACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATG
GCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGTTTGACGTATTCATGC
TTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTNGCATCGNAGACGGNG
ATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA

consensusID : consensus_10094#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 188
fasta sequence

                              [AATTCATATGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCTCTTTCTTCAGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGGCAGTATTGTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTANCTTCCTTAT]

[+] EMBL SM698                [AATTCATATGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCTCTTTCTTCAGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGGCAGTATTGTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTANCTTCCTTAT]




>consensus_10094#2
AATTCATATGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCT
CTTTCTTCAGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGTGTTTGGCA
GTATTGTTGTCTGTTCTTTGAAATATATTTCTACACATGTATACCGGTAAATCGATTANC
TTCCTTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10094#0      GAGAACTTAACTCCATTTTGCAATTTCGAAAAACCGCAACGCATTTATCGAACACCGATT 60
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      ACTTTCATTGCTTTAGTTTCCGATTTCACTTAATTTTAGAGTGGAGATGGCCAAATCACA 120
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      GACTTCTGTTCGTTCTATGTCCTTCCCAGTTCAGTCATGAAAAGCAAACAACACAATAGC 180
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      CTTCGCGCGGCCTACTCATTTTACAATGTTTCTACAGTAACACCATGGCCTGCATTAATT 240
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      CAAGATATGTTGATTTCAGCCAAACAATTAAAGTTTGACGTATTCAATGCTTTGGATCTA 300
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      ATGGAAAATGGAAAATTCCTGGAAGAGTTGAAATTTGGCATCGGAGACGGTGATCTACAT 360
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      TATTATTTGTATAACTGGCGTTGTCCATTCACTAAGCCCTCTGAGATTGGAATAGTATTA 420
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      CAATAAATGAAATATTGCCGAAATTTCGTACTGACTTCTAACATTACTAAGTAAATCAAA 480
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      TTTGCAAATCTTTTCACGCTTTAATGTATTATATACTTTCTGTTCAGTGAACTTTACAAA 540
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------------------------------------------------------
                                                                                   

consensus_10094#0      CCATGTTGAACCTTTACATCGAAGGAATTTTAAAAATCTTGTTTAACTTGCTATAGTTAT 600
consensus_10094#2      ------------------------------------------------------------
consensus_10094#1      ------------TTTATTATCTGAGTACTTGGAAAAGTTTAATATTCATCCAATTTTTAC 48
                                                                                   

consensus_10094#0      CTTTGTCTTAGTTCCATAATTGTTCCTACTGATCAATGCAATTGTTTTGAAATTCATA-- 658
consensus_10094#2      --------------------------------------------------AATTCATA-- 8
consensus_10094#1      AAAAGAAGAATTTCAGCATTTCTTTGTTCCTCGAGATGATGTTGTGTACTCTTTCGTAGT 108
                                                                           *** **  

consensus_10094#0      TGAGCACTATTTTG-AATAGCTTATCAGTTTTCCTCGATTTCCCTTTCTCCTCTTTCTTC 717
consensus_10094#2      TGAGCACTATGGTGGANTAGCTTATCAGTTTCCCTCGATTTCCCTTTCTCCTCTTTCTTC 68
consensus_10094#1      TGAGAGTGGAGATG-GCCAAATCACAGACTTCTGTTCGTTCTATGTCCTTCCCAGT--TC 165
                       ****        **    *  * *     **   *   **     * ** * *  *  **

consensus_10094#0      AGCTTTTAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGT-GGTTNGCAGNATTNN 776
consensus_10094#2      AGNTTTNAAAAATGACAAAAAATGTACCTTAAGCTACTGTTAGT-GTTTGGCAGTATTGT 127
consensus_10094#1      AGTCATGAAAAGCAAACAACACAATAGCCTTCGCGCGGCCTACTCATTTTACAATGTTTC 225
                       **   * ****   *  ** *   ** * *  **      ** *   **  **   **  

consensus_10094#0      TGN--CTGGTCTT--GAATATATT----CTACACATGT--ATACCGGTAA-TCGATAANT 825
consensus_10094#2      TGT--CTGTTCTTTGAAATATATT---TCTACACATGT--ATACCGGTAAATCGATTANC 180
consensus_10094#1      TACAGTAACACCATGGCCTGCATTAATTCAAGATATGTTGATCTCAGCCAAACATTAAGT 285
                       *         *       *  ***    * * * ****  **  * *  *  *  * *  

consensus_10094#0      NNC-TTTATT-------------------------------------------------- 834
consensus_10094#2      TTC-CTTAT--------------------------------------------------- 188
consensus_10094#1      TTGACGTATTCATGCTTTGGATCTAATGGGAAAATGGAAATCCCCTGGAGAGTGAATTTN 345
                             ***                                                   

consensus_10094#0      ------------------------------------------------------
consensus_10094#2      ------------------------------------------------------
consensus_10094#1      GCATCGNAGACGGNGATCTACATTATTATTGNATACTGGCGTGTCCATTCACTA 399