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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1038 fasta sequence
[TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATACATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAATATATCAGAATTG]
[+] EMBL CD140861 [TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATACATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCC ]
[+] EMBL CD140720 [TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATACATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATG ]
[+] EMBL CD082151 [ aggaCCAAGTTGTTTTTAACTTACCGTTCTAGCCATTTGGATCTGTTATCAGTCCAATATCTTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT AAAATAAAT ]
[+] EMBL CD140083 [ atGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGGTTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTCTCAACCAAGTTTGGCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAA ]
[+] EMBL CD082881 [ TCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAAAGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGAAGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT AAAATAAATTCGTACGCTCTGTTACGCTTCCAAC AGCTACTTGA ]
[+] EMBL CD179456 [ TTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCGAAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGCATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGCGGGAAGAAATTCTCTGCCATACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTC ]
[+] EMBL CD079554 [ GACAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTT AACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAATATATCAGAATT ]
[-] EMBL CD073821 [ GAAAGTGCGGAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAAAAAATCAGAATTG]
[-] EMBL CD076466 [ GAATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACACCCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATTTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGTCATGAATATATCAGAATTG]
[-] EMBL CD190083 [ TTTTTCAACCAAGTTTGCCTTTAATCGTCACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAAC ]
[-] EMBL CD075767 [ GAACAAAATGATCCCGGTGTTGGGATTTCAAACATGTATTCGCCAACGACCCAGTCTTTTTAAAATAAAAATAAATTGGTACGTTTTGTTACGTTTCCACCAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATGGTATTGTTTCCAAACGAATTTTTATGCATTTTGGGGGTATCAGGCCCTGTGCCCATGTACATATAAATAATATGGTTTTTTTTCTTTTTTGTTCCCCCTAAATTTTGTCGATAAATATCGCAGGGTATTCCATTATATTTCATGAGCTTATACCCAAGTTTAAAAGTCATGAATATATCAGAATTG]
consensusID : consensus_10098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[CGGCACGAGGCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCA]
[+] EMBL CD084001 [CGGCACGAGGCCCCGTGTAATATGCTATTTCCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCACTGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTGTCGATAAATATCGCAGCGTATTACATTATATTTCA]
consensusID : consensus_10098#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence
[ACGGTCCATAATAGTGAGTCNCCTACTTTTGAATTTCTCTATGATTAATTGTGAAACAGTACTAACTGAACATTTGGCTTTTCAGCTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTCTACAAACGAATTTCTATGCATTTTG]
[-] EMBL CD198353 [ACGGTCCATAATAGTGAGTCNCCTACTTTTGAATTTCTCTATGATTAATTGTGAAACAGTACTAACTGAACATTTGGCTTTTCAGCTTCAAAGGTGTTTGCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAAAATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAATAAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGTGATTTTGTAAATCGTATTGTCTACAAACGAATTTCTATGCATTTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10098#0 TTGATAGGAAAAACAAAACTCCCTCTCCCTAAGCTGTACCAGGTCTTCCGGGGGCATATA 60
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 CATTTCTATCCCATTTGCCCCTGGGTATCCTGCATGAAACTGCTCCAAATTAATTCCCAA 120
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 GTTGTTTTTAACTTACCGTTCTAGCCATTCGGATCTGTTATCAGTCAAATATCGTTGAGG 180
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 TTCAATATTATTCAATCCTCATGAATTCATTCAATGACCAGGCGTGTGCCTTGTGTGGAA 240
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 AGGTTGTTTCTACTAAACACGGTATGGCTAGGCATTTAAAAATTGTTCATGAAGGTCTCG 300
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 AAGAATGTAAATGTGACTCATGTGGACGAAAGTTTACCACAAAATTTGCCCTCCATCGGC 360
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 ATATTCGAAAAGTTCATGAAGGTATATCAGAACTTGTTCTTCCTTGCGCTTGTTGTGGGA 420
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 AGAAATTCTCTGCCAAACATGGTCTAGAGCGTCATATGAGATTGATACACGAAAGTGCGG 480
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 AATTGTGCATTTGCCCTTTGTGTAACAGGAGTTTTTCAACCAAGTTTGCCTTTAATCGTC 540
consensus_10098#1 ------------------------------------------------------------
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 ACACAAAAACTGTGCACTCAGATTCAATCAGCTTATGTTCCCCG-TGTAATATGCTATTT 599
consensus_10098#1 ----------------------------CGGCACGAGG-CCCCG-TGTAATATGCTATTT 30
consensus_10098#2 -------------------ACGGTCCATAATAGTGAGTCNCCTACTTTTGAATTTCTCTA 41
* ** * * ** *
consensus_10098#0 CCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTT 659
consensus_10098#1 CCATCGAAGTTCGCTCTTCTTGAACACAACCTTACGGTCCATAATACTTCAAAGGTGTTT 90
consensus_10098#2 TGATTAATTGTGAAACAGTACTAACTGAACATTTGGCTTTTCAG--CTTCAAAGGTGTTT 99
** * * * *** *** ** * * * **************
consensus_10098#0 GCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAA 719
consensus_10098#1 GCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAA 150
consensus_10098#2 GCTTGCCATGAATGTTTGAAGTGTTTTCCTGATACAGAGTCACGAAGAAGCCACGAACAA 159
************************************************************
consensus_10098#0 AATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT 779
consensus_10098#1 AATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT 210
consensus_10098#2 AATGATCACGGTGTTGGGACTTCAAACATGTATTCGCCAACGACACAGTCATCTTAAAAT 219
************************************************************
consensus_10098#0 AAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGT 839
consensus_10098#1 AAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGT 270
consensus_10098#2 AAAAATAAATTCGTACGCTCTGTTACGCTTCCAACAAGCTACTTGAATAATGTATAGAGT 279
************************************************************
consensus_10098#0 GATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCAC 899
consensus_10098#1 GATTTTGTAAATCGTATTGTTTACAAACGAATTTCTATGCATTTTGGGTGTATCAGGCAC 330
consensus_10098#2 GATTTTGTAAATCGTATTGTCTACAAACGAATTTCTATGCATTTTG-------------- 325
******************** *************************
consensus_10098#0 TGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTG 959
consensus_10098#1 TGTGACCATGTACATATAAATAATATTGTTTTTTTTCTTTTTTGTTCACCCTAAATTTTG 390
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 TCGATAAATATCGCAGCGTATTACATTATATTTCATGAGCTTATACACAAGTTTAAAAGT 1019
consensus_10098#1 TCGATAAATATCGCAGCGTATTACATTATATTTCA------------------------- 425
consensus_10098#2 ------------------------------------------------------------
consensus_10098#0 CATGAATATATCAGAATTG 1038
consensus_10098#1 -------------------
consensus_10098#2 -------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||