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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10108#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 988 fasta sequence
[ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGAAGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCTTGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAGCAAAGCTACAGATCTTGAGCATTCTTTGGCCGTGTCTCAAAAAGAGTGCATTCGCCTTCGTCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAAGCAAGTGGCATCAGAGGGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA-GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG-AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGACTCTTTTGAGTCTATCGATACTGTTGATCCTGATAAAAATTCATTGAAACGACTGGATGCTGTTAATTGTAAAGAAAATAATNTCGAAACTGCCCTACAG]
[-] EMBL CD193718 [ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGAAGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGA ]
[-] EMBL CD193649 [ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGAAGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGA ]
[+] EMBL CD152532 [ CGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCTTGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAGCAAAGCTACAGATCTTGA ]
[+] EMBL CD152531 [ CGACTTTTGGAGAGGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGATCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCTTGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAGCAAAGCTACAGATCTTGAGCATTCTTTGGCCGTGTCTCAAAAAGAGTGCATTCGCCTTCGTCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAA ]
[-] EMBL CD147062 [ ATTCGCCTTCGTCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAAGCAAGTGGCATCAGAGGGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCT ]
[+] EMBL CD182979 [ GGAGTCGAAGCAAGTGGCATCAGA GGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAGAAATCA ]
[+] EMBL CD180949 [ GGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAGAGTTTTCGACCAGTTTTTATATTCTGACCATATTAACAGATAATAGACAAGCCCATGATAATCATAACAGAGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAT AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATA ]
[+] EMBL CD192364 [ GATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAACCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGACTCTTTTGAGTCTATCGATACTGTTGATCCTGATAAAAATTCATTGAAACGACTGGATGCTGTTAATTGTAAAGAAAATAATNTCGAAACTGCCCTACAG]
[+] EMBL CD192828 [ GATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATA GAACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACATTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAG AATCATGATGATAAGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAGTTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGATTCTTTTGAGTCTATTGATACTGTTGATCCTGANTAAAATTCATTGAAACGACTGGATGCTGTTAATTGTAAAGAAAATAATTTCGAAACTGCCCT ]
[-] EMBL CD181310 [ AGTTAAATAATATCAACGGACGATTCGGTATGCAAAATAATTTCGATCTATTAAAGTCATCGGAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCATAATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAATTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAATCAACTCTTTCCTTACCGGTG ]
consensusID : consensus_10108#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[AAGAGCAGCCAGTGTTGGTCCTTACCTGTCAGCGAGATTCACATCCTTTTCAGGACCGCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGTTTCGGAGTAGATGTCGTTGAACATGATACAACTCACGGCTGCATCATAGCTCAAGTTGCTTTGTATCATCCCAATGGAGCAGAAGCAAAACAAAGTAGCGTTGACTATGTCAGTAATAATGATGTTTTGACTGGTATCGAGACACTCCAT]
[+] EMBL CD184748 [AAGAGCAGCCAGTGTTGGTCCTTACCTGTCAGCGAGATTCACATCCTTTTCAGGACCGCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGTTTCGGAGTAGATGTCGTTGAACATGATACAACTCACGGCTGCATCATAGCTCAAGTTGCTTTGTATCATCCCAATGGAGCAGAAGCAAAACAAAGTAGCGTTGACTATGTCAGTAATAATGATGTTTTGACTGGTATCGAGACACTCCAT]
consensusID : consensus_10108#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 351 fasta sequence
[ATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCCGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATAGAACAAATAATAGACAAGCCCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGT]
[-] EMBL CD157292 [ATGTGAAGGTCGAAACTGACCAACTTAAAGATGAAAAAGTGCCCGGAAAAGTTTTCGACCAGTTTTTATATTCTGACCATAGAACAAATAATAGACAAGCCCATAATTATACTAAATGAGATTATCAAAGTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGTGATACAAATAGTAGCAATGGAACTTTCGTCAATAACACAAGAATAGTAAAAAAAAATGACGAAGATTTTGCTGACCGTGAGATATTTTCCGGTGATATAATTCGT]
[+] EMBL CD063244 [ GTTGGACGTTCAGTGGCCCGCGCCAAACCTACGAAAAACAATGCTATCTTTGACTGCAAAGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 ACGGCTCTTACAAGAGGCACAAGAAATTTCTGAGGCTGGTTGGCAAGCTATGGTGGATGA 60
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 AGATCGACTTTTGGAGAAGCTAAGTCTCTATGAAACTCAACTCTCCTTATTGAAGCAAGA 120
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 TCTGCCCGAGAATTCGTTACAGTCGCATCTAATGCAGGCTCTGGAAGAAAAATTTAATCT 180
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 TGAGAAAGCCAGTAAAATAATGTTGGAACGTCTGTTAAACGAAAAAGCCGAAGTTTTTAG 240
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 CAAAGCTACAGATCTTGAGCATTCTTTGGCCGTGTCTCAAAAAGAGTGCATTCGCCTTCG 300
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 TCAAGACTACGAAAATATCCAAGAGGCGTACCAGAATTTGGCGAATGATAGGGAGTCGAA 360
consensus_10108#1 ------------------------------------------------------------
consensus_10108#2 -----------------------------------------------ATGTGAAGGTCGA 13
consensus_10108#0 GCAAGTGGCATCAGAGGGATCAAAGGAAAGCAACATCGAAAAATCTGATGTGAAGGTCGA 420
consensus_10108#1 ------------------------------AAGAGCAGCCAGTG-TTGGTCCTTACCTGT 29
consensus_10108#2 AACTGACCAACTTAAAGATGAAAAAGTGCCCGGAAAAGTTTTCGACCAGTTTTTATATTC 73
consensus_10108#0 AACTGACCAACTTAAAGATGAAAAAGTGCCTGGAAAAGTTTTCGACCAGTTTTTATATTC 480
** ** * ** *** *
consensus_10108#1 CAGCGAGATTCACATCCTTTTCAGGACCGCATAATTATACTAAATGAGATTATCAAAGTT 89
consensus_10108#2 TGACCATAGA-ACAAATAATAGACAAGCCCATAATTATACTAAATGAGATTATCAAAGTT 132
consensus_10108#0 TGACCATAGA-ACAAATAATAGACAAGCCCATGATAATCATAACGGTGATGATGCAAACA 539
* * * *** * * * * *** ** ** *** * *** ** **
consensus_10108#1 GGACGTTCAGTGGCCCGCGCCAAACC--TACGAAAAACAATGCTATCTTTGACTGCAA-- 145
consensus_10108#2 GGACGTTCAGTGGCCCGCGCCAAACC--TACGAAAAACAATGCTATCTTTGACTGCAA-- 188
consensus_10108#0 TTCTTATGAATGGTTTAGACAATGGTATTTCGAAAATCGCTGAGAATCATGATGATAAGT 599
* * *** * * * ****** * ** * *** **
consensus_10108#1 --AGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGT 203
consensus_10108#2 --AGTCTTGTCAAGAAGTCATGCATTGATATGGCACAAAGGGGATCGGTTTTGGTTGCGT 246
consensus_10108#0 TAAATAATATCAACGGACGATTCGGT-ATGCAAAATAATTTCGATCTATTAAAGTCATCG 658
* * * **** ** * * ** * ** **** ** **
consensus_10108#1 GATACAAATAGTAGCAATGGAACTTTCGT-CAATAA--CACAA-GAATAGTAAAA---AA 256
consensus_10108#2 GATACAAATAGTAGCAATGGAACTTTCGT-CAATAA--CACAA-GAATAGTAAAA---AA 299
consensus_10108#0 GAACCTGATAATTTCTGCGGTATTCAAGGGCAACATGCCACTACAAATAATAAATCTCAT 718
** * *** * * ** * * * *** * *** * **** **** *
consensus_10108#1 AAATGACGAAGATTT-TGCTGACCGT--GAGATATT-----TTCCGGTGATATAATTCGT 308
consensus_10108#2 AAATGACGAAGATTT-TGCTGACCGT--GAGATATT-----TTCCGGTGATATAATTCGT 351
consensus_10108#0 AATGGACATACATCTGTTCGGATAATTGAAGGTATTCGGCTTTTCAATCAATCAAATCAA 778
** *** * ** * * * ** * ** **** ** * * * ** **
consensus_10108#1 TT---CGGAGTAGATGTCGTTGAAC--ATGATACAACTCACGGCTGCATCATAGCTCAAG 363
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 TTGATCAAATTACTCCAAGATGAATTAAGTATTTTGGCCAAGATTAAAAGGTCAAATGAA 838
consensus_10108#1 TTGCTTTGTATCATCCCAATGGAG-CAGAAGCAAAACAAAGTAGCGTTGACTATGTCAGT 422
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 TCAACTCTTTCCTTACCGGTGAATTCTGACTCAGCTACAAACAAAATTGACTCTTTTGAG 898
consensus_10108#1 AATAATGATGTT-TTGACTGGTATCGAGACACTCCAT----------------------- 458
consensus_10108#2 ------------------------------------------------------------
consensus_10108#0 TCTATCGATACTGTTGATCCTGATAAAAATTCATTGAAACGACTGGATGCTGTTAATTGT 958
consensus_10108#1 ------------------------------
consensus_10108#2 ------------------------------
consensus_10108#0 AAAGAAAATAATNTCGAAACTGCCCTACAG 988
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||