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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1023 fasta sequence
[ACGAATTAAGTGAAGTGTGGAAGTAACAGGGGACGGAGTGAGAATGTGGAGAGTGTGACGTGGTGATTGTGGTTTTGTTTGTGGTTGTAGTACTGTTTTTGTTTTTTCGTTGTATTTGTAGTTGTAATTGTAATAGTTGTAGTGTGGTGAACAACAACAACAACAACAAGAACAAGAACAAGAACAAGAACAAGAAGACGAGTGGGGACAATCCAATGTATTTGAAGTGAAAATTGCAGAATGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTTGCAAAATATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATGGCTTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG---------TAGTAGTAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTG---ATAGTGGGTATTGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCGAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCCACTCAATCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTATCTGCATGCCATCCCACGTGCTGAATCAAG]
[+] EMBL CD086349 [ACGAATTAAGTGAAGTGTGGAAGTAACAGGGGACGGAGTGAGAATGTGGAGAGTGTGACGTGGTGATTGTGGTTTTGTTTGTGGTTGTAGTACTGTTTTTGTTTTTTCGTTGTATTTGTAGTTGTAATTGTAATAGTTGTAGTGTGGTGAACAACAACAACAACAACAAGAACAAGAACAAGAACAAGAACAAGAAGACGAGTGGGGACAATCCAATGTATTTGAAGTGAAAATTGCAGAATGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTTGCAAAATATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATCGCTTTCTGTTCACGTTCTTTCCTCCTTGAACTTCACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG TAGTAGTAGTAGTAGTAGTATTCGTTGTTGTTGATGACTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTGGGTATTGTGGGTATTGTGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATANGTATGTTGATGGTGGGATTCGAACCGGCGTCGTct ]
[-] EMBL CD085241 [ AAGAAGAAGAACACGAGTGAGGACAATCCAATGTATTTGAAGTGAAAATTGTAGAGTGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTCGCAAAATATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATGGCTTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAGTATTAGTATTAGTAGTAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGT ]
[-] EMBL CD195019 [ ATCAATGAACCTTGACTGTTCCTTTGCGAATGTCAATCAATTGTCTCACAATTCACTGTTCCTTCATTTCAATACCAATGGCCTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTGCCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG TA T TAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTG ATAGTGGGTATTGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCA ]
[-] EMBL CD195754 [ GTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGATTGTGTGATTGTGGTAGTATGTATGTG ATAGTGGGTATTGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTTGAACCCGCGCCGTTTAAAGGTGGTTTCCCATCCAACTCCTTAGATCCCTCGGCCACAC ]
[-] EMBL CD068408 [ TGATTGTGGTAGTATGTATGTG ATAGTGGTTATGGCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGATGGGATTTGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCGAATACA ]
[-] EMBL CD089102 [ GCGTGTGATGTGAAAATGTGATGTTAGTGGTTGTGAATAGGTATGTTGATGGT GGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCCACTCAATCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCT ]
[+] EMBL CD086978 [ tACAAACTACGCAGTGTAACACGTTCACTCGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTATCTGCATGCCATCCCACGTGCTGAATCAAG]
consensusID : consensus_10121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 543 fasta sequence
[TGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACGCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCACTCACTCACTCACTCACTCAATCACTCACTCACTCACACACTCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTGTCTGCATGCCATCCCACGTGCTGAATCAAGTTCACACTGAGTTAAGCAGCAATCGGCACACATCACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAA]
[-] EMBL CD086902 [TGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGTGGTTCCCCATCCAACGCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACT ACTCACTCACTCACTCACTCAATCACTCACTCACTCACACACTCAATCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCAC ]
[-] EMBL CD085801 [ GGTGCCGTTTAAAGGTGGTTCCCCATCCAACGCCTTAGACCACTCGGTCACACGGAAAATGATTGGAGATACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACCACAACACTACACACTACACAACACATACTATTCACTCACTCACTCACTCAATCACTCACTCACTCACTCAATCACTCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCAGACGATCAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCAATGTGTCTGCATGCCATCCCACGTGCTGAATCAAGTTCACACTGAGTTAAGCAGCAATCGGCACACATCACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAA]
[-] EMBL CD085747 [ GTGGTTCCCCATCCAACTCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCACTCACTCACTCACTCACACA CACT A TCACACACTCAATCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCACACGATGAGTCAGTGAGGG ]
[-] EMBL CD191118 [ AGACCACTCGACCACACGGAAAATGATGGGAACTACACAAACTTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCAATCAATCAATCACTCACTCAATCACTCACTCAATCACACACTCACTCACACACTCAAACAATCAATCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATTCACCACcca ]
[-] EMBL CD087769 [ ACTACACAAAACTTACTCATCAATTTCAACATTCCATTTCATCATCATCATGCAAATACACTCTGCTATTCACGACAACACTACACACTACACAACACATACTACTCAATCAATCACTCACTCACTCAATCACTCACTCAATCACACACTCACTCACACACTCAACCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATTCACCACTGTCTGCTTCGACAAACTACGCAGTGTAACACGTTCAGATGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTGTGTTTGACACTTGTCCACCCAATGTGTGTGCATG ]
consensusID : consensus_10121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence
[CACTCTGCTATTCACGACAACACTACACACTACACTACACATACTACTCACTCACTCAGTCACTCACTCACTCACTCAATCAATCAATCAATCACTCACTCACTCAATCAATCAATCAATCAATCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACACAGTGTAACACGTTGAGATGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCATTGTGTCTGCATGCCATCCCAAGTGGTACTGAATCAAGTTCACACTGAGGTAAGCAGCAATCGGCACACGTGACTACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAAGTGACTGTGACTGGTCGGTGTTGTGAATGAATGAAATGAAGTGTGCAAGTAACAGGGGATCACGGGAGTGAGAATGTGGAGAGAGTGACA]
[-] EMBL CD084753 [CACTCTGCTATTCACGACAACACTACACACTACACTACACATACTACTCACTCACTCAGTCACTCACTCACTCACTCAATCAATCAATCAATCACTCACTCACTCAATCAATCAATCAATCAATCACTCACACACTCAATCAATCAACCACACAACCACTCACCACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACACAGTGTAACACGTTGAGATGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTTGTCCACTCATTGTGTCTGCATGCCATCCCAAGTGGTACTGAATCAAGTTCACACTGAGGTAAGCAGCAATCGGCACACGTGACTACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTGAGTGGGACTAGGCAAGTGACTGTGACTGGTCGGTGTTGTGAATGAATGAAATGAAGTGTGCAAGTAACAGGGGATCACGGGAGTGAGAATGTGGAGAGAGTGACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10121#0 ACGAATTAAGTGAAGTGTGGAAGTAACAGGGGACGGAGTGAGAATGTGGAGAGTGTGACG 60
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 TGGTGATTGTGGTTTTGTTTGTGGTTGTAGTACTGTTTTTGTTTTTTCGTTGTATTTGTA 120
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 --------------------------------------------------CACTCTGCTA 10
consensus_10121#0 GTTGTAATTGTAATAGTTGTAGTGTGGTGAACAACAACAACAACAACAAGAACAAGAACA 180
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 TTCACGACAACACTACACACTACACTACACATACTACTCACTCACTCAGTCACTCACTCA 70
consensus_10121#0 AGAACAAGAACAAGAAGACGAGTGGGGACAATCCAATGTATTTGAAGTGAAAATTGCAGA 240
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 CTCACTCAATCAATCAATCAATCACTCACTCACTCAATCAATCAATCAATCAATCACTCA 130
consensus_10121#0 ATGTCTTAGTAAAATGTGAGAGGAAAACAGTAAATACTTAATTTGCAAAATATCAATGAA 300
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 CACACTCAATCAATCA-ACCACACAACCACTCACCACTCA--TCACCCCGTGTCAATCCA 187
consensus_10121#0 CCT-TGACTGTTCCTTTGCGAATGTCAATCAATCGTCTCACAATTCACTGTTCCTTCATT 359
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 TCCACCACTGTCTGCTT-CGACAAACTACACAGTGTAACACGTTGAGATGATGAGTCAGT 246
consensus_10121#0 TCAATACCAATGGCTTTCTGTTCACGTTCTTTCCTCCTCCAACTTGACGAATTTCTGCTG 419
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 G-------AGGGAGAGTGTGTTT-CATCCTGTCTGTTTGACACTTGTCCACTCATTG-TG 297
consensus_10121#0 CCAGACATTCTATTCCTGACTCGCCATATATACTACTTATATAGATATAAGTAGTATTAG 479
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 TCTG-CATGCCAT-CCCAAGTGGTACTGAATCAAGTTCACACTGAGGTAAGCAGCAATCG 355
consensus_10121#0 TAGTAGTAGTAGTAGTAGTATTCGTTGTTATTGATGAGTGTGATGATGTTGGGCTGTGAT 539
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 --GCACACGTGACTACAGTAGTAGTTGGATACAGTGAG-GAGACGATGTTGTG-TGTGA- 410
consensus_10121#0 TGTGTGATTGTGGTAGTATGTATGTGATAGTGGGTATTGCGTGTGA-TGTGAAAATGTGA 598
consensus_10121#1 ------------------------------------------------------------
consensus_10121#2 -GTGGGACTAGGCAAGTGACTGTG-ACTGGTCGGTGTTGTGAATGAATGAAATGAAGTG- 467
consensus_10121#0 TGTTAGTGGTTGTGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGT 658
consensus_10121#1 ------------TGAATAGGTATGTTGATGGTGGGATTCGAACCGGCGCCGTTTAAAGGT 48
consensus_10121#2 TGCAAGTAACAGGGGATCACGGGAGTGAGAATGTGGAGAGAGT-GACA------------ 514
* ** *** ** * ** * *
consensus_10121#0 GGTTCCCCATCCAACTCCTTAGACCACTCGGCCACACGGAAAATGATTGGAACTACACAA 718
consensus_10121#1 GGTTCCCCATCCAACGCCTTAGACCACTCGACCACACGGAAAATGATTGGAACTACACAA 108
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 AACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCGAATACACTCTGCTAT 778
consensus_10121#1 AACTTACTCATCAATTTCAACATTCCATTTCACCATCATCATGCAAATACACTCTGCTAT 168
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 TCACGACAACACTACACACTACACAACACATACTACTC---------------------- 816
consensus_10121#1 TCACGACAACACTACACACTACACAACACATACTACTCACTCACTCACTCACTCACTCAA 228
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 -----------------CACTCAATCACACACTCAATCAATCAACCACACAACCACTCAC 859
consensus_10121#1 TCACTCACTCACTCACACACTCACTCACACACTCAATCAATCAACCACACAACCACTCAC 288
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 CACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTA 919
consensus_10121#1 CACTCATCACCCCGTGTCAATCCATCCACCACTGTCTGCTTCGACAAACTACGCAGTGTA 348
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 ACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTT 979
consensus_10121#1 ACACGTTCACACGATGAGTCAGTGAGGGAGAGTGTGTTTCATCCTGTCTGTTTGACACTT 408
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 GTCCACTCAATGTATCTGCATGCCATCCCACGTGCTGAATCAAG---------------- 1023
consensus_10121#1 GTCCACTCAATGTGTCTGCATGCCATCCCACGTGCTGAATCAAGTTCACACTGAGTTAAG 468
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 ------------------------------------------------------------
consensus_10121#1 CAGCAATCGGCACACATCACAGTAGTAGTTGGATACAGTGAGGAGACGATGTTGTGTGTG 528
consensus_10121#2 ------------------------------------------------------------
consensus_10121#0 ---------------
consensus_10121#1 AGTGGGACTAGGCAA 543
consensus_10121#2 ---------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||