cluster # 10129

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Schistosoma mansoni
cluster # 10129 cluster # 10129 Sequences # 13 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10129#0 length = 718 sequences # 10

consensus_10129#1 length = 631 sequences # 3

consensusID : consensus_10129#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 718
fasta sequence

                              [TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTGCTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC-CATATGATCCAGCAACAGCACATAGTGATGCGCAAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATGGGGCCCTCAA]

[-] EMBL CD136049             [TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTGCTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGT                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD144355             [                    ACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTGCTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AI740365             [                                                                                                                                                 AACAGCTGATCCCATCACTTCAGATTCCTGGTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAACAGCACATAGTGATGCGCAAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATGGGGCCCTCAA]
[-] EMBL CD157203             [                                                                                                                                                                                                         CAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCACGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAAAAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTG TTATCACATATGATCCAGCAACA                                                                          ]
[+] EMBL CD090235             [                                                                                                                                                                                                             AGCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAAC                                                                           ]
[-] EMBL CD157101             [                                                                                                                                                                                                              GCTCAAGAAGTTGCTACATCGGATGCTTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCCTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACAGACGGACTCTTGTTTATC CATATGATCCAGCAACA                                                                          ]
[-] EMBL CD157159             [                                                                                                                                                                                                              GCTCAAGAAGTTGCTACATCGNATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTG TTATC CATATGATCCAGCAACA                                                                          ]
[-] EMBL CD157167             [                                                                                                                                                                                                              GCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGGTCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAACA                                                                          ]
[-] EMBL CD157218             [                                                                                                                                                                                                              GCTCAAGAAGTTGCTACATCGGATGCCTTGATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATC CATATGATCCAGCAACA                                                                          ]
[-] EMBL CD157180             [                                                                                                                                                                                                                                                                                                                                                                                                                          CCTAGAAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAGCAAGGAGACCTTGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTGTTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCCGAAGTGACGGACGGACTCTTG TTATC CATATGATCCAGCAACA                                                                          ]




>consensus_10129#0
TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTG
CTGTTAAACCATATACCATTTCCTCAACGGTCCTAGAAGAAATAACATGTTTAGCAATTC
GAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTGGTATA
AAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTTGATTG
CTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCAGAAAG
GTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGCCTTTC
CTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAGAAGTT
GTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCTTGCCT
CGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGAAAAAGGTGCTG
TTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTGTTGTTAGCC
GAAGTGACGGACGGACTCTTGTTTATCCATATGATCCAGCAACAGCACATAGTGATGCGC
AAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATGGGGCCCTCAA

consensusID : consensus_10129#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 631
fasta sequence

                              [TGGGATAAGGCGTTAAGTAAAAATGAAAAATACATATGGTTTCATCAGTATGACACCGTATCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAAATGTTTCTTGCGATTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTTTCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTCATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGTTGTGCAGCTACTCTTGGTTTAAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGACACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGCTATGGGATGTGGCGACACAAACTTGTATA]

[+] EMBL CD097136             [TGGGATAAGGCGTTAAGTAAAAATGAAAAATACATATGGTTTCATCAGTATGACACCGTATCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAAATGTTTCTTGCGATTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTTTCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTCATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCGTCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGC                                                                                                                                                                                                           ]
[-] EMBL CD122761             [                                                                         AACAGAGGGTTGTCGCTGGTACCAGATAACCAAAATGTTTCTTGCGATTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTTTCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTCATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGTTGTGCAGCTACTCTTGGTTTAAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGACACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGCTATGGGATGTGGCGACACAAACTT     ]
[-] EMBL CD123139             [                                                                                                                                                                                                                                                                             GTGAACATTTTATTGCTTCTTTCGCTGGGTCATCAGTAGAATTATATGACGCTCCAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGTTGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAGTGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGCTGTGCAGCTACTCTTGGTTTAAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGACACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGCTATGGGATGTGGCGACACAAACTTGTATA]




>consensus_10129#1
TGGGATAAGGCGTTAAGTAAAAATGAAAAATACATATGGTTTCATCAGTATGACACCGTA
TCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAAATGTTTCTTGCGA
TTTGGTTTCACCTAAGCTCTTAGAACTATCATCAGAAAATCCAGTCATCAACAAATTTTT
TCAGTGTCCAGATTCCTCCTTTGACATTTCGAGCGGTATTTCTAGAAATCCTCGTCTTCA
TGTATCTTCTTTTGATGTTAGTGCAAGTGGTGAACATTTTATTGCTTCTTTCACTGGGTC
ATCAGTAGAATTATATGACGCTCAAACGGGGAATATTCGGCGTTCTCTTGAAGGTCATGT
TGGAGATGTATATACCTGCAGATTTTTTCCATCTGGGCTAGTTGCACTCACAGCAGGCAG
TGATATGCAGTTAAAAATTTGGTGTCTCATTACTGGTCGTTGTGCAGCTACTCTTGGTTT
AAATTGTACTGATTCTAATAATAAAAATGAGCCAGGAGGTCATAGGACTGGTATCCTGGA
CACCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAG
GCTATGGGATGTGGCGACACAAACTTGTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10129#0      TAAGGCTATGGGATGTGGCGACACAAACTTGTATATCAGCAATCCCAGTAACTATTAGTG 60
consensus_10129#1      --------TGGGATAAGGCGTTAAG----TAAAAATGAAAAATACATATGGTT-TCATCA 47
                               ******  ****  *      *  * ** *  *** *   *   * * *   

consensus_10129#0      CTGTTAAACCATAT-ACCATTTCCTCAAC----GGTCCTAGAAGAAATAACATGTTTAGC 115
consensus_10129#1      GTATGACACCGTATCACAAGCTGGAGAACAGAGGGTTGTCGCTGGTACCGGATAACCAAA 107
                        * * * *** *** ** *  *    ***    ***  * *  *  *    **    *  

consensus_10129#0      AATTCGAAAACATTCTGGTTTACCGATTCAAACAGCTGATCCCATCACTTCAGATTCCTG 175
consensus_10129#1      ATGTTTCTTGCGATTTGGTTT---CACCTAAGCTCTTAGAACTATCATCAGAAAATCCAG 164
                       *  *      *  * ******    *   ** *   *    * ****    * * *** *

consensus_10129#0      GTATAAAGTTCAAGAGACATCTTCGACAACAGCTCAAGAAGTTGCTACATCGGATGCCTT 235
consensus_10129#1      TCAT------CAACAAATTTTTTCAGTG-----TCCAGA---TTCCTCCTTTGACATTTC 210
                         **      *** * *  * ***         ** ***   * *  * *  **    * 

consensus_10129#0      GATTGCTGTTGGCACTGGTACTAATGCTTCAGTTCGTTTATATGAGCTGGCTGCTCGTCA 295
consensus_10129#1      GAGCGGTATTTCTAGAAATCCTCGTCTTCATGTATCTTCTTTTGATGTTAGTGCAAGTGG 270
                       **  * * **   *    * **  *  *   **   **  * ***  *   ***  **  

consensus_10129#0      GAAAGGTTGTGTTGCTCAGTGCACGTTACCGAGTGGCAGTGGATCGGTCGGGGCATGTGC 355
consensus_10129#1      TGAACATTTTATTGCTTCTT-----TCACTGGGT-------CATCAGTAGAATTATATGA 318
                         **  ** * *****   *     * ** * **        *** ** *    ** ** 

consensus_10129#0      CTTTCCTGAAGAGATACCGATACCATTTTCAAAAGAGATTCAATTCATCGATGTACCTAG 415
consensus_10129#1      CGCTCA-AACGGGGAATATTCGGCGTTCTCTTGAAGG--TCATGTTGGAGATGTATATAC 375
                       *  **   * * *  *       * ** **   *  *  ***  *    ******  ** 

consensus_10129#0      AAGTTGTGTTTCTAGCTTTATGGACTATGGAATTTTTGCCGGTAGTCAACAAGGAGACCT 475
consensus_10129#1      CTGCAGATTTTTT--CCATCTGGGCTAG-----TTGCACTCACAGCAGGCAGTGATATGC 428
                         *  *  *** *  *  * *** ***      **   *    **    **  ** *   

consensus_10129#0      TGCCTCGTGGGATATACGTCAAACAAAACAACCGTTATGGCAGTTGACTCATGA---AAA 532
consensus_10129#1      AG--TTAAAAATTTGGTGTCTCATTAC-TGGTCGTTGTG-CAGCT-ACTCTTGGTTTAAA 483
                        *  *       *    ***  *  *      **** ** *** * **** **    ***

consensus_10129#0      AGGTGCTG-TTCAACAAATACGTGTGTGTAGGCGAGCTAATTGTCAATATCTGTTGCTTG 591
consensus_10129#1      TTGTACTGATTCTAATAATAAAAATGAGCCAG-GAGGTCATAGGACTGGTATCCTGGACA 542
                         ** *** *** *  ****    ** *   * *** * ** *      * *  **    

consensus_10129#0      TTGTTAGCCGAAGTGACGGACGGACTCTTGTTTATCCATATGATCCAGC---AACAGCAC 648
consensus_10129#1      CCGCTATCATAGATCGTGGTCGTAATATTGCTTCTATAGATCGACTAGGTTGGCTAAGGC 602
                         * ** *  *  *   ** ** * * *** ** *  * **   * **       *   *

consensus_10129#0      ATAGTGATGCGCAAATCCCTATTAGTCTGGAGCTTACTGGAGTGAATTGTGATCTATATG 708
consensus_10129#1      TATGGGATGTGGCGACACAAACTTGTATA------------------------------- 631
                          * **** *   *  *  * * ** *                                

consensus_10129#0      GGGCCCTCAA 718
consensus_10129#1      ----------