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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10140#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 928 fasta sequence
[CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCCTTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTCTGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATACACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCTCCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCTTGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTTAATTTGCTTATCGAGGCCAACCTCGTGC]
[-] EMBL CD185195 [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAA TTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ]
[+] EMBL CD074287 [ tgCACCATAATATTACCAGAAAGGCCAGTAAAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTTTTCAACAGGTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGCAAGTATATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCCTTCAATTTCTGATGATAAGTTCAA ]
[+] EMBL CD074467 [ tgACCATAATATTACCAGAAAGGCCAGTAAAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGGTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGCAAGTAGATGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGGCACTTCGAAACACCATC ]
[-] EMBL CD137453 [ tactgATAATAGTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAAGTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTAGCCAAGTCATCTTCCGTAAAT ]
[-] EMBL CD130629 [ GACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACA ]
[-] EMBL CD184351 [ GTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTCTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAG ]
[-] EMBL CD184354 [ GTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTCTTTACAATAGTTCCAGGAGCC TTTTTTCTGAATCAAG ]
[-] EMBL CD185225 [ TATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAACAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ]
[-] EMBL CD185341 [ TATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ]
[-] EMBL CD185234 [ cATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG ]
[-] EMBL CD080371 [ AGATGTCGGTGGTTCACCGAAAAACGTAGCGGTGAACTTTCGCTTTATCCATGGGAGATCTGTCACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGTCAGGATCTGTTTTTATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTATATTGGCTTATTTATTCCTTCAATTTTTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTCTGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATACACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCTCCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCTTGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTTAATTTGCTTATCGAGGCCAACCTCGTGC]
consensusID : consensus_10140#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence
[CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG]
[-] EMBL CD131429 [CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCGGTGGTTCACCGAAAAACGTAGCGGCGAACTTTCGCTTTATCCATGGGAGATCTGTCAATTAATTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGCTTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGCCAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAATAGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTCG]
consensusID : consensus_10140#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 259 fasta sequence
[TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATTACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATTACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC]
[+] EMBL AI394989 [TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAGTACAAATTACAGGTAATAACACTAAAAGTTGATTTAACAGCTCAATCACACGAGATCTATAAGTTATTACGAGATCTTGTCAATTAAGTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGCTTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10140#0 CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC 60
consensus_10140#1 CCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGATGTC 60
consensus_10140#2 --------TTTTTTGTTTTTTTTTAAAACAGTGTCACCATAATATTACCAGAAAGGCCAG 52
***** * * * * * * ** * * * ** * **
consensus_10140#0 GGTGGTTCACCATAATATTACCAGAAAGGCCAGTAGAAATTACAGATAATAACACTAAAA 120
consensus_10140#1 GGTGGTTCACC------------GAAAAAC------------------GTAGCGGCGAAC 90
consensus_10140#2 TACAAATTACAGGTAATAACACTAAAAGTTGAT---------------TTAACAGCTCAA 97
* ** *** ** * *
consensus_10140#0 GTTGATTTAAAAACTCAATCACACGAAAAATATAAGTTATTACGAGATCTTGTCAATTAA 180
consensus_10140#1 TTTCGCTTTA---------TCCATGGGAGAT------------------CTGTCAATTAA 123
consensus_10140#2 TCACACGAGA---------TCTATAAGTTAT---------TACGAGATCTTGTCAATTAA 139
* * ** **********
consensus_10140#0 TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC 240
consensus_10140#1 TTGGACAGATGAAAAAACACTTTACAGCTTCTTCAACAGCTCGGACGCCTCCTTCTTTGC 183
consensus_10140#2 GTGGACAGTTGAGCGCCCACTTTACAGCTTCTTCAACAGCTCGGGCGCCGCCTTCATTGC 199
******* *** *************************** **** ***** ****
consensus_10140#0 TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC 300
consensus_10140#1 TTCTTCAGTATCCAAGTCATCTTCCGTAAATTCTAACACTTTATGACAATAATGCTTAGC 243
consensus_10140#2 TTCTTCAGTATCCAAGTCACCTTCCGTAAATTCTACCACTTTATGACAATAATGGTTAGC 259
******************* *************** ****************** *****
consensus_10140#0 CAGATCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT 360
consensus_10140#1 CAGGTCATAATTCTTTAACCTGTGGTACGTCTTTGCTATATAAAGAGAATTTTTTACAAT 303
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA 420
consensus_10140#1 AGTTCCAGGAGCCTTTTTTTCTGAATCAAGGAGATAGTTAAGAGCCTCTTCGTAAGTAGA 363
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 TGTCGGTGGTTCACCGAAAAACGTACCGGAGAACTTTCGCTTTATCCATGGGAGATCTGT 480
consensus_10140#1 TGTCG------------------------------------------------------- 368
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 CACTTCGAAACACCATCTCCCAAGAGCGTGCAACGTCACAAAGTCGACAGGATCTGTTTT 540
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 TATGGCTTTCACCCAATGATTCTTCATCTTAAAAGAATTTTCTATTCGCTTATTTATTCC 600
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 TTCAATTTCTGATGATAAGTTCAAAAATATTCCGTACCAAGAGTTGCATTTAGAACTTTC 660
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 TGGATCTATTCGAAGCCCTTCATCACAAGCTGACAGACCTTCTTCGATGTATTTTTTATA 720
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 CACTTGTTGATCGTTTTTACCCAATGAGTTAGCTAAATTTCTGCAGCTATGTGCCTTCCT 780
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 CCTAGTTCAATTCAGGATGCTTATTATTGCTTATTGCATGAGACATATACATCGTATGCT 840
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 TGTTTGTATTTTTTAGAAATCAAGCTTTTGCCATTCTGTAATTACACCGTCCATAGCGTT 900
consensus_10140#1 ------------------------------------------------------------
consensus_10140#2 ------------------------------------------------------------
consensus_10140#0 AATTTGCTTATCGAGGCCAACCTCGTGC 928
consensus_10140#1 ----------------------------
consensus_10140#2 ----------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||