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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10143#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1667 fasta sequence
[TCGGAAAGTTATTGGCTTGTGGATGTTTCTGTGGTGGTGTGTAATACCTATCGTCCTGCTTTCGAATGCACCTGATTACTGTGCATCAGTTGTTTTGGTTGCAAATGATACTAACTTCGACTTACTAATATCTCAATATGATGTAGCATTACTGAAATTCTCAGCAGAATGGTGTTATTATAGCCAAACTTTAGCACCAATCTATGAACATGCCTCGGAGAAGGTTACTGAATTAACGAAAAGTCGTAAAGTTGCTTTTATCTCAATAGACTGTGAAAGTAATCAAAATCTATGCGCCAAACAGTATATCCGTAAATATCCTACAATTAAAATAACAAAATATGGTAAAATACTGAAAAGTGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAAGTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGAAAAAAATTTTGGATAGTTGGGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTCTCATATGGATTTATTTAAAAAAGTCGCTGCTATTGAACAAAGTTCATGTAAATTTTACATAAATTACAATTTGACAATGAATGACGAACGACTTGCAACGTATGATACTATGACTTCTAAAGTTAAATCTTTAACCATTTTAAAAAATGCCGATCTTACTGCAATACATAATTGGGTAAAGAATCAATGCAATAGTTTAGTACGTGAAATTACATTTAGTAATGCAGAAGAAATTACTGAAGAACGTTTACCATTAATGTTATTATTTTATAATCCAGAAAATAAATCAATAGTTAATCGTTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCTACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGATGGCATTAAGTGATCC-AAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGGAAACTACACATGGAATATCATTATGGACCAGGCGGTGGAACAACGACTACATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC-ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG-AAAA-AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATCATCCCCCCATCCTCATTCTCCTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA]
[+] EMBL CD096746 [TCGGAAAGTTATTGGCTTGTGGATGTTTCTGTGGTGGTGTGTAATACCTATCGTCCTGCTTTCGAATGCACCTGATTACTGTGCATCAGTTGTTTTGGTTGCAAATGATACTAACTTCGACTTACTAATATCTCAATATGATGTAGCATTACTGAAATTCTCAGCAGAATGGTGTTATTATAGCCAAACTTTAGCACCAATCTATGAACATGCCTCGGAGAAGGTTACTGAATTAACGAAAAGTCGTAAAGTTGCTTTTATCTCAATAGACTGTGAAAGTAATCAAAATCTATGCGCCAAACAGTATATCCGTAAATATCCTACAATTAAAATAACAAAATATGGTAAAATACTGAAAAGTGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAAGTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGAAAAAAATTTTGGATAGTTGGGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTCTCATATGGATTTATTTAA ]
[+] EMBL CD096773 [ GTGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAAGTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGGAAAAAATTTTGGATAGTTGGGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTCTCATATGGATTTATTTAAAAAAGTCGCTGCTATTGAACAAAGTTCATGTAAATTTTACATAAATTACAATTTGACAATGAATGACGAACGACTTGCAACGTATGATACTATGACTTCTAAAGTTAAATCTTTAACCATTTTAAAAAATGCCGATCTTACTGCAATACATAATTGGGTAAAGAATCAATGCAATAGTTTAGTACGTGAAATTACATTTAGTAATGCAGAAGAAATTACTGAAGAACGTTTACCATTAATGTTATTATTTTATAATCCAGAAAATAAATCAATAGTTAATCGTTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCTACCGTTTAT ]
[+] EMBL CD150002 [ ACATTTAGTAATGCAGAAGAAATTACTGAGGAACGTTTACCATTAATGTTATTATCTTATAATCCAGAAAATAAATCAATAGTTAATCGTTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATTTAGGCAAATCTAAAGAAGATCTACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGATGGCATTAAGTGATCC AAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGG ]
[+] EMBL CD152209 [ ACAGTCAATTTTGTAACAGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCTACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGATGGCATTAAGTGATCCAAAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGTAAACTACACATGGAATATCATTATGGACCAGGCGGTGGAACAACGACTACATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACATCTCCTTTTTTTTGAATACATTCAACTTAT ]
[+] EMBL CD152179 [ CGACTACATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTA ]
[-] EMBL CD095978 [ CATCTCCAATAACCGAGGATGACGAATCAGTCAAAACTACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGGAAAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTCTACGTTATATTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ]
[-] EMBL CD095813 [ CATCTCCAATAACCGAGGATGACGAATCAGTCAAAACCACACCAC ATGTTTCTGTATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ]
[-] EMBL CD152199 [ CAGTCAAAACTACACCACAAGGTTTCGGGATTCCAACATTTAAGCCCATCAAGAATGCGATATACAATTAGACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ]
[-] EMBL CD152230 [ CAAGAATGCGATATACAATTATACGTGATGAATTCTAACTAAGTATATACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTAATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATC ]
[-] EMBL CD166130 [ GCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATATACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATACATTCAACTTATAGAAATGG AAAA AAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTCGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATA ]
[-] EMBL CD152649 [ TTGAATACATTCAACTTATAGAAATGG AAAAGAAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACTATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTAATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATGGATGATATCATCATCCCCCCATCCTCATTCTCCTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA]
[-] EMBL CD152717 [ TGGTGTGTGTACACATGGATGATATCATCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA]
consensusID : consensus_10143#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 439 fasta sequence
[GGCAGATCGGCACGAGGTGTACATGGTGTGTGTCACATGGATATATCATCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCAGTTGTTTATCTCTGTTCTATTTGAATCTACTTTATTTTCTTTCTTTTTCTGAATATCTTTTTTTATACTTTCAAACTGTGTTACTTTGTGTAGTGAAGTATTTTGTTCATCGATTTGACATAGTTCACTATGTATTGTACTCTATTACTGAAGAAATTTTGTAATTATATCATTTCTTTTCTAATTATTATTATTGTTATTGTCTTTCATAGTTACTTATTTCTTATTACTACT]
[+] EMBL CD084126 [GGCAGATCGGCACGAGGTGTACATGGTGTGTGTCACATGGATATATCATCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTAAATTAAACAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACACGAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCAGTTGTTTATCTCTGTTCTATTTGAATCTACTTTATTTTCTTTCTTTTTCTGAATATCTTTTTTTATACTTTCAAACTGTGTTACTTTGTGTAGTGAAGTATTTTGTTCATCGATTTGACATAGTTCACTATGTATTGTACTCTATTACTGAAGAAATTTTGTAATTATATCATTTCTTTTCTAATTATTATTATTGTTATTGTCTTTCATAGTTACTTATTTCTTATTACTACT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10143#0 TCGGAAAGTTATTGGCTTGTGGATGTTTCTGTGGTGGTGTGTAATACCTATCGTCCTGCT 60
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TTCGAATGCACCTGATTACTGTGCATCAGTTGTTTTGGTTGCAAATGATACTAACTTCGA 120
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 CTTACTAATATCTCAATATGATGTAGCATTACTGAAATTCTCAGCAGAATGGTGTTATTA 180
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TAGCCAAACTTTAGCACCAATCTATGAACATGCCTCGGAGAAGGTTACTGAATTAACGAA 240
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AAGTCGTAAAGTTGCTTTTATCTCAATAGACTGTGAAAGTAATCAAAATCTATGCGCCAA 300
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 ACAGTATATCCGTAAATATCCTACAATTAAAATAACAAAATATGGTAAAATACTGAAAAG 360
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TGAATATCGTGATGAAAGAAGTGTGGAGGCATTTGTTAAATTTATTGAAGCTAACCTAAA 420
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GTTTCCAGTTGAAATTATCAATGGTCATCGGGCTAACCCGAAAAAAATTTTGGATAGTTG 480
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GGTAAATAAAAGTGTTGAGACGAAATGTATATTGGCTTTGGTTGATCAGTTAAATACTTC 540
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TCATATGGATTTATTTAAAAAAGTCGCTGCTATTGAACAAAGTTCATGTAAATTTTACAT 600
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AAATTACAATTTGACAATGAATGACGAACGACTTGCAACGTATGATACTATGACTTCTAA 660
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AGTTAAATCTTTAACCATTTTAAAAAATGCCGATCTTACTGCAATACATAATTGGGTAAA 720
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GAATCAATGCAATAGTTTAGTACGTGAAATTACATTTAGTAATGCAGAAGAAATTACTGA 780
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AGAACGTTTACCATTAATGTTATTATTTTATAATCCAGAAAATAAATCAATAGTTAATCG 840
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 TTTTATGGAATTTGTCAATGCACATTTAAGTCATCATCAATCTACAGTCAATTTTGTAAC 900
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 AGCGAACGGAATCACTTTTTCACATCCATTAGCTCATCTAGGCAAATCTAAAGAAGATCT 960
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 ACCGTTTATCTGTTTAGATTCATTTGCACATATGTATGTATATCCTGGATCACTAGAGAT 1020
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GGCATTAAGTGATCCAAACTATTGGATCAGTTTGTTGAAGATCTAAAATCTGGGAAACTA 1080
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 CACATGGAATATCATTATGGACCAGGCGGTGGAACAACGACTACATCTCCAATAACCGAG 1140
consensus_10143#1 ------------------------------------------------------------
consensus_10143#0 GATGACGAATCAGTCAAAACTACACCACATGTTTCTGTATTCCAACATTTAAGCCCATCA 1200
consensus_10143#1 ------------GGCAGATCGGCACGAGGTGTACATGGTGTGTGTCACATGGATATATCA 48
* ** * * *** * *** ** * ** * ****
consensus_10143#0 AGAATGCGATATACAATTATACATGATGAATTCTAACAAAGTATAAACATGTAGGTATAT 1260
consensus_10143#1 TCATCTCCCCATCCTCATTCTCTTATTAAGTACCATTACTTTA-AATTAAACAGTGATTG 107
* * ** * * * * * * * * * * ** ** * ** **
consensus_10143#0 ACATATAGTCTGACGTCCTGTAATTTTGTTCATATAACACGTCTCCTTTTTTTTGAATAC 1320
consensus_10143#1 TTCTGTTTTCCTTT-TCTTTTCTTTCTGTTGTTGTA-CAT-TTTCCTTCTACACGAATGT 164
* * ** ** * * ** **** * ** ** * ***** * ****
consensus_10143#0 ATTCAACTTATAGAAATGGAAAAAAGGGACATGATTGATGTTTTGTGCTCTGTTCTCACT 1380
consensus_10143#1 G---AATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCAGTTGTTTATCTCTGTT 221
** * * ** **** * ** * * * * * ** * * * *
consensus_10143#0 ATTTTTTTCGCTTTCTCTCTTTACGTTATTTTATGTAGGATCAATTTTATATTTTCTTTA 1440
consensus_10143#1 -CTATTTGAATCTACTTTATTTTCTTTCTTTTTCTGAATATCT-TTTTTTATACTTTCAA 279
* *** * ** * *** * ** **** * *** **** *** * * *
consensus_10143#0 ATGACAAAGGTTTGTATACGTGTAATGTTATTGCATGTGTACATGGTGTGTGTACACATG 1500
consensus_10143#1 ACTGTGTTACTTTGTGTA-GTGAAGTATT-TTGTTCATCGATTTGACATAGTTCACTATG 337
* ***** ** *** * * ** *** * * ** * * ***
consensus_10143#0 GATGATATCATCATCCCCCCATCCTCATTCTCCTATTAAGTACCATTACTTTAAATTAAA 1560
consensus_10143#1 TATTGTA-CTCTATTACTGAAGAA--ATTTTGTAATTA--TATCATTTCTTT---TCTAA 389
** ** * ** * * *** * **** ** **** **** * **
consensus_10143#0 CAGTGATTGTTCTGTTTTCCTTTTCTTTTCTTTCTGTTGTTGTACATTTTCCTTCTACAC 1620
consensus_10143#1 TTATTATTATTGTTATTGTCTTTCATAGTTACTTATTTCTTATTACTACT---------- 439
* *** ** * ** **** * * * ** ** * * *
consensus_10143#0 GAATGTGAATGTGTTAAAGGCGAAAGAGGGAGAACGTTCGTCTATCA 1667
consensus_10143#1 -----------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||