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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10144#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 678 fasta sequence
[TGTCATGGTGGGAGGTAAACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC-GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA-TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT-TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC-TTTCTCCGTATAAG-AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA-ACAATAACATAAAATTTATCATGG-TGTGAATATACAGTGCAGGATGTAAGATG-AAAGTAATTA-GGGAA-TAAATGCAGCATACAATGCTTACAGTATC-GGATTAT-GGCTCTAAGATGATCA-TTTCGACTACCGCG-CCT-AA-GTT-GGATTTAGATACAGTCCAGGAC]
[-] EMBL CD082280 [TGTCATGGTGGNAGGTAAACGTAAGACNTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTA GGGAA TAAATGCAGCATAGAATGCTTACAGTATC GAATTAT GGCTCTAAGATGATCA TTTCGACTACCagtcct ]
[+] EMBL CD192378 [ CATGGTGGGAGGTAAACGTAAGGCCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTG ]
[+] EMBL CD192073 [ CATGGTGGGAGGTAAACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCT ]
[+] EMBL CD132999 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCGCAGACATTTCCAAAATATTTATCCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCANGATGTAAGATG AAAGTAATTC GGGAA TAAATGCAGCATAAAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCG CCT AAGGTT GGATnt ]
[+] EMBL CD189300 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCANAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATGAAAAGT ATTA NGGAA TAAATGCAGCATANAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCG CCT AN GNT GGnatn ]
[+] EMBL CD183582 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATAACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCANAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTCTTTTCT CGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTNG ACANTAACAT AAATTTATCATGGNGGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTA GGGAATTAAATGCAGCATACCATGCTTACAGTATCGGGATTAT GCCTCTAAGATGATCA TTTCGACTACCGC ]
[+] EMBL CD188456 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTCTGAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGC CCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCANGATGTAAGATG AAAGTAATTA GGGAA TAAATGCAGCATACAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCGCCCT AA GTT GGACTTAGATACAGTCCAGGAC]
[+] EMBL CD190179 [ AACGTAAGACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTTNTTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAGAAGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACANTAACATANAATNTATCATGGNTGTGAATATACAGTGCAGGATGTANGATG AAAGT ATTANGGGAA T AATGCAGCATACCATGCTTACAGTATC GGATTATGGGCTCT AGATGATCA TTTCGACTACCGCG CCTNAG GTTNGNATTT ]
[-] EMBL CD133473 [ ACGTAAGACGTAAATAATCTGGCGACCCACATAAAGTACTGTTGTCAATTCAGACTTT GTCTTC GAAAAGTTTTTGTGGGACTTCATCTCCTTGAA TATAGTCTTGTGCATCAATCACAGAAAGAATTTCTATCGCTCCTGTCTCATGTACTTCACCAGCTAGTAAATATTCATCCTAAACAAAATAAGCTTTTTCAGAGTGAAAGATTATGTCCAATTCACAGACATTTCCAGAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTC GGGAA TAAATGCAGCATAAAATGCTTACAGTATC GGATTAT GGCTCTAAGATGATCA TTTCGACTACCGCG CCT AAGGTT GGATTT ]
[+] EMBL CD190038 [ TAAAGTACTGTTGCCAATTGAGACTTTGGTCTTC GAAAAGTTTTTGTGGGACTTCATCCTCTTGAATTATA TCTTGTGCATCAATCACAGAAAGAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAGACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGANAC ATAACATAAAATNTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGT ATTA GGGAA TAAATGCAGCATACAATGCTTACAGTATC GGGATAT GGCTCTAAGATGATCATTTTCGACTACCGCGCCCT AG GTT GGGATTAGATACAGTACA ]
[-] EMBL CD189992 [ AAAACAAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCCATTCTAGAAACGAGCACATTT TTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTAAATACTTTTTCTTTTC TTTCTCCGTATAAG AGCTATACCATTTTTGAAGTCGCACTTTACCTTGACGACTGA ACAATAACATAAAATTTATCATGG TGTGAATATACAGTGCAGGATGTAAGATG AAAGTAATTA GGGAA TAAATGCAGCATACAATGCTTACAGTATC GGATTAT GGCTTTAAGATGATCA TTTCGACTACCGCG CCT AAGGTT GGAT ]
consensusID : consensus_10144#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 354 fasta sequence
[AAAAAGTAAAATTTTTTTTCAAAAACATTTGACATTGTCATGGGGGGAGGTAAACGTAAAACCTAAATAATCTGGCGACCCAAATAAAGTCCTGTTGCCAATTGAAACTTTGGTCTTCAAAAAGTTTTTGGGGGACTTCATCCTTTTGAATTATATTTTGGGCATCAATCACAAAAAAAATTTTTTTCGCTCCTGTCTTTTGTCCTTCACCAGCTAGTAAATTTTCTTCCAAAACAAAATAAGCTTTTTCAAAGGGAAAAATTTTGTCCAATTCACAAACTTTTCCAAAATTTTTATCCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCT]
[+] EMBL CD075885 [AAAAAGTAAAATTTTTTTTCAAAAACATTTGACATTGTCATGGGGGGAGGTAAACGTAAAACCTAAATAATCTGGCGACCCAAATAAAGTCCTGTTGCCAATTGAAACTTTGGTCTTCAAAAAGTTTTTGGGGGACTTCATCCTTTTGAATTATATTTTGGGCATCAATCACAAAAAAAATTTTTTTCGCTCCTGTCTTTTGTCCTTCACCAGCTAGTAAATTTTCTTCCAAAACAAAATAAGCTTTTTCAAAGGGAAAAATTTTGTCCAATTCACAAACTTTTCCAAAATTTTTATCCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCT]
consensusID : consensus_10144#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence
[AAGTACTGTTGTCCAATTGAGACTTTGGTCTTTCGAAAAGTTGNGGTGGGACTTCATCCTTCNNGNATTATATNTTGTGCNTCAATCACNGNAAGAATTTCTTTCGCTCCNGTCTCTNGTACTTCACCNGNTAGTAANTATTCATCCCAAACCAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGANGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGC]
[-] EMBL AA559694 [AAGTACTGTTGTCCAATTGAGACTTTGGTCTTTCGAAAAGTTGNGGTGGGACTTCATCCTTCNNGNATTATATNTTGTGCNTCAATCACNGNAAGAATTTCTTTCGCTCCNGTCTCTNGTACTTCACCNGNTAGTAANTATTCATCCCAAACCAAATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTATCCAGAATCTCCACATAACGANGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGATCAATAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10144#0 -----------------------------------TGTCATGGTGGGAGGTAAACGTAAG 25
consensus_10144#2 ------------------------------------------------------------
consensus_10144#1 AAAAAGTAAAATTTTTTTTCAAAAACATTTGACATTGTCATGGGGGGAGGTAAACGTAAA 60
consensus_10144#0 ACCTAAATAATCTGGCGACCCAAATAAAGTACTGTTGTC-AATTGAGACTTTGGTCTT-C 83
consensus_10144#2 --------------------------AAGTACTGTTGTCCAATTGAGACTTTGGTCTTTC 34
consensus_10144#1 ACCTAAATAATCTGGCGACCCAAATAAAGTCCTGTTGCC-AATTGAAACTTTGGTCTT-C 118
**** ****** * ****** *********** *
consensus_10144#0 GAAAAGTTTTTGTGGGACTTCATCCT-CTTGAATTATATCTTGTGCATCAATCACAGAAA 142
consensus_10144#2 GAAAAGTTGNGGTGGGACTTCATCCTTCNNGNATTATATNTTGTGCNTCAATCACNGNAA 94
consensus_10144#1 AAAAAGTTTTTGGGGGACTTCATCCT-TTTGAATTATATTTTGGGCATCAATCACAAAAA 177
******* * ************* * ******* *** ** ******** **
consensus_10144#0 GAATTTCTTTCGCTCCTGTCTCTTGTACTTCACCAGCTAGTAAATATTCATCCAAAACAA 202
consensus_10144#2 GAATTTCTTTCGCTCCNGTCTCTNGTACTTCACCNGNTAGTAANTATTCATCCCAAACCA 154
consensus_10144#1 AAATTTTTTTCGCTCCTGTCTTTTGTCCTTCACCAGCTAGTAAATTTTCTTCCAAAACAA 237
***** ********* **** * ** ******* * ****** * *** *** **** *
consensus_10144#0 AATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTAT 262
consensus_10144#2 AATAAGCTTTTTCAAAGTGAAAGATTATGTCCAATTCACAGACATTTCCAAAATATTTAT 214
consensus_10144#1 AATAAGCTTTTTCAAAGGGAAAAATTTTGTCCAATTCACAAACTTTTCCAAAATTTTTAT 297
***************** **** *** ************* ** ********** *****
consensus_10144#0 CCAGAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGAT 322
consensus_10144#2 CCAGAATCTCCACATAACGANGAATAATCTCCAATGTAATTAATTCATTATCTGTCTGAT 274
consensus_10144#1 CCAAAATCTCCACATAACGATGAATAATCTCCAATGTAATTAATTCATTATCTGTCT--- 354
*** **************** ************************************
consensus_10144#0 CAATAGCGCACACAAAATAGAGACTAGCATATCTTCTGTACACAATCTTAAGATCTTGCC 382
consensus_10144#2 CAATAGC----------------------------------------------------- 281
consensus_10144#1 ------------------------------------------------------------
consensus_10144#0 ATTCTAGAAACGAGCACATTTTTGGTTTCCTCGCAAAGACCAGCGAAATAATTTCGCGTA 442
consensus_10144#2 ------------------------------------------------------------
consensus_10144#1 ------------------------------------------------------------
consensus_10144#0 AATACTTTTTCTTTTCTTTCTCCGTATAAGAGCTATACCATTTTTGAAGTCGCACTTTAC 502
consensus_10144#2 ------------------------------------------------------------
consensus_10144#1 ------------------------------------------------------------
consensus_10144#0 CTTGACGACTGAACAATAACATAAAATTTATCATGGTGTGAATATACAGTGCAGGATGTA 562
consensus_10144#2 ------------------------------------------------------------
consensus_10144#1 ------------------------------------------------------------
consensus_10144#0 AGATGAAAGTAATTAGGGAATAAATGCAGCATACAATGCTTACAGTATCGGATTATGGCT 622
consensus_10144#2 ------------------------------------------------------------
consensus_10144#1 ------------------------------------------------------------
consensus_10144#0 CTAAGATGATCATTTCGACTACCGCGCCTAAGTTGGATTTAGATACAGTCCAGGAC 678
consensus_10144#2 --------------------------------------------------------
consensus_10144#1 --------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||