cluster # 10178

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Schistosoma mansoni
cluster # 10178 cluster # 10178 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10178#0 length = 578 sequences # 6

consensus_10178#1 length = 515 sequences # 6
consensus_10178#2 length = 403 sequences # 2

consensusID : consensus_10178#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 578
fasta sequence

                              [CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAATGAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACCAGAAGACGGTCG-TATTTCCACCA-GCCAGGGTACCGGGC]

[+] EMBL CD168293             [CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAATGAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC                                         ]
[-] EMBL CD168106             [                                                                   GCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACC                                        ]
[-] EMBL CD168028             [                                                                    CGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCGCTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACCAGAAGACGGTCG TATTTCCACCATGCCAGGGTACCGGGC]
[-] EMBL CD168042             [                                                                    CGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAACTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCGCTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGGCATGAAGTATCACAAAATTCATCACCTACGGCATAACCAGAAGACGGTCGTTATTTCCc                   ]
[-] EMBL CD067044             [                                                                                                                                                                                                      TGAAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGTCGATGTTAACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACNTACGGCATAACC                                        ]
[-] EMBL CD167954             [                                                                                                                                                                                                                                                                                                                                                                                                    AAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACCAGAAGACGGTCC GATTTCCACCA GCCAGGGTACCGGG ]




>consensus_10178#0
CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAAT
GAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACC
ATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGT
ACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTT
AGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGG
AACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGT
AGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGC
ACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACTAC
ATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAACC
AGAAGACGGTCGTATTTCCACCAGCCAGGGTACCGGGC

consensusID : consensus_10178#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 515
fasta sequence

                              [CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAATGAGCGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC-GGACT-AGA-CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC]

[+] EMBL CD167952             [CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAATGAGCGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC]
[+] EMBL CD167935             [                                           GCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC]
[+] EMBL CD167916             [                                           GCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAAC]
[+] EMBL CD066980             [                                           GCGTCCGGGATTTTGTGTTCACCTGACGCCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTC GGACT AGA CCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTAC        ]
[-] EMBL CD168038             [                                                                                                                                                                                          GATATTGCGAGCATGGCCTAAAATACGTTTAGAATGATATGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATATGGAAATCGACCACTTGTAATCTGATTATCAGGATAGCGGCCAAATCCGCCCGTTGTAGCTGT                                                                                                                                                                                      ]
[-] EMBL CD152110             [                                                                                                                                                                                                                                                                       CATTAGCATATGGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCTGGACTCAGAGCCAGGATGCAAGCAAATGGA                                                                          ]




>consensus_10178#1
CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAATGAGCGAAGCGTCCGGGATTTTGTG
TTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTC
AGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGG
ATCACTGATATTGCGAGCATGGCCTAAAATACGTTTAGAATAATATGGTGGAGGGGCTTG
ATAATCATTTGGATGATTGAAAACATTAGCATATGGAACTCGACCACTTGTAATCTGATT
ATCAGGATAACGGCCAAATCCGACCGTTGTAGCTGTAGATAGATTTCGGCGATGCTGACG
TCTAAAATGATTCGGTTTATCAAAACCATACGTTGCACTAGATGAAGTTCGTCGGACTAG
ACCAGGATGCAAGCAAGTTGATATAAAATTTACTACATTTGTATCCCAATCAATTGGACA
TGAAGTATCACAAATTTCATCACCTACGGCATAAC

consensusID : consensus_10178#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 403
fasta sequence

                              [AACATACTACTCATCAGACCAGATACANNCATAGTTTGCATAAACATAGTTAAACATATCCGATTTAATACAATACGTGGACTAGCACAGGTTTGTAGACAAGGGCATAAACAAGAAGTATCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAATGCAATATCATTAGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCAGGTTTATTTTCAGGAATGAGTGAAGC-GTCCGGGAT-TTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGAT]

[-] EMBL CD195963             [AACATACTACTCATCAGACCAGATACANNCATAGTTTGCATAAACATAGTTAAACATATCCGATTTAATACAATACGTGGACTAGCACAGGTTTGTAGACAAGGGCATAAACAAGAAGTATCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAATGCAATATCATTAGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCAGGTTTATTTTCAGGAATGAGTGAAGC GTCCGGGAT TTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGAT]
[-] EMBL CD184362             [                                                                                             TGTAGACAAGGGCATAAACAAGAAGTATCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAATGCAATATCATTAGATGAACGTGCAGGTGTTAGATAAGGATATGCTTCAGGTTTATTTTCAGGAATGAGTGAAGCGGTCCGGGATATTTGTGTTCACCct                                                                                                                  ]




>consensus_10178#2
AACATACTACTCATCAGACCAGATACANNCATAGTTTGCATAAACATAGTTAAACATATC
CGATTTAATACAATACGTGGACTAGCACAGGTTTGTAGACAAGGGCATAAACAAGAAGTA
TCATCAACTTTTGCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAAC
GAATTTTCTAATGCAATATCATTAGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCA
GGTTTATTTTCAGGAATGAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGA
TTTTGTTCGGCAGAACCATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATA
AGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10178#0      CTCCGGTACCCTGGGCATGGGTGGAAAATCAGGATAAGCTTCGGGTTTATTTTCAGGAAT 60
consensus_10178#1      ------------------------CGACCTCCGGTACCCTGGCTGGTGGAAATCACGAAT 36
consensus_10178#2      ------------------------------------------------------------
                                                                                   

consensus_10178#0      GAGTGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACC 120
consensus_10178#1      GAGCGAAGCGTCCGGGATTTTGTGTTCACCTGACACCACTAGATTTTGTTCGGCAGAACC 96
consensus_10178#2      ---------------------------------------AACATACTACTCATCAGACCA 21
                                                               * **  *  **  **** * 

consensus_10178#0      ATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGT 180
consensus_10178#1      ATCCCAATTATAAGATGGTCTTTCAGTTAACTGGTCAAGAATAAGAGGTTTTGTGACAGT 156
consensus_10178#2      GATACANNCATAG------TTTGCATAAACATAGTTAAACATATCCGATTTAAT-ACAAT 74
                           **   ***        ** **   *  * ** **  ***   * ***  * *** *

consensus_10178#0      ACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTT 240
consensus_10178#1      ACGGAAATCCCAACCAGATGTAGGATCACTGATATTGCGAGCATGGCCTAAAATACGTTT 216
consensus_10178#2      ACGTGGA-CTAGCACAGGTTTGTAGACAAGGGCATAAACAAGA-AGTATCATCAACTTTT 132
                       ***   * *     *** * *     **  *  **    *  *  *  * *   ** ***

consensus_10178#0      AGAATAATA--TGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATAT 298
consensus_10178#1      AGAATAATA--TGGTGGAGGGGCTTGATAATCATTTGGATGATTGAAAACATTAGCATAT 274
consensus_10178#2      GCAGTTGTAGTTATTTCATGAGTTTCTGCATCACGCGCACATATAAACGAATTTTCTAAT 192
                         * *  **  *  *  * * * **    ****   * *    * **   ***  *  **

consensus_10178#0      GGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCT 358
consensus_10178#1      GGAACTCGACCACTTGTAATCTGATTATCAGGATAACGGCCAAATCCGACCGTTGTAGCT 334
consensus_10178#2      GCAAT---ATCATT----AGATGAACGTGGAGGTGTTAGACAAGGATAAGCTTCAGGTTT 245
                       * **    * ** *    *  ***   *   * *    * ***     * * *      *

consensus_10178#0      GTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTT 418
consensus_10178#1      GTAGATAGATTTCGGCGATGCTGACGTCTAAAATGATTCGGTTTATCAAAACCATACGTT 394
consensus_10178#2      ATTTTCAGGAATGAGTGAAGC----GTCCGGGATT-TTGTGTTCACCTGACAC------- 293
                        *    **   *  * ** **    ***    **  **  *** * *  *  *       

consensus_10178#0      GCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACT 478
consensus_10178#1      GCACTAGATGAAGTTCGTCGGACTAGACCAGGATGCAAGCAAGTTGATATAAAATTTACT 454
consensus_10178#2      -CACTAGATTTTGTTCGGCAGAACCATCCCAATTATAAG---ATGGTCTTTCAGTTAACT 349
                        ********   ***** * **     **    *  ***    * *   *  * ** ***

consensus_10178#0      ACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAA 538
consensus_10178#1      ACATTTGTATCCCAATCAATTGGACATGAAGTATCACAAATTTCATCACCTACGGCATAA 514
consensus_10178#2      G-------GTCAAGAATAAGAGGTTTTGTGACAGTACGGAAATCCCAACCAGATGTAGGA 402
                                **   *  **  **   **    *  **  *  **   ***    * *  *

consensus_10178#0      CCAGAAGACGGTCGTATTTCCACCAGCCAGGGTACCGGGC 578
consensus_10178#1      C--------------------------------------- 515
consensus_10178#2      T--------------------------------------- 403