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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10195#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1640 fasta sequence
[ACGGCTGGGTTACTTTGCCAATGTCGGTGACCTTG-TCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTTTTAGACGTGTTTCCATCATTATATNTTTTAATAAAACTGATATACTT-AAAGAAAAGTTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAATGGATCCATTCCGTCTGCAAGATGTTCAAACA-TTTATGGTTGAAGTATTTGCCTCTCTAGTCAATCACAATTTTCCA-CCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT-AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTGTTTGCGCCCTTGGATCTCACGTGAACACAATATCTATACCTTCCGAAAATTAATTAAAAGTCTTACTCTTCGTGCTAACAATGTCTGTGCCAAATTCAAATTACCCCCAAAATCATCCGTACTACTAATAAAAAATGCACCCTTTTTATTTCATATTTTCTTATCCAATCATTGTCTTTCACGCTACTTAATTCTTCATTACATAAATATATGTGCTTTGTA]
[+] EMBL CD181001 [ACGGCTGGGTTACTTTGCCAATGTCGGTGACCTTG TCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAAT ]
[+] EMBL CD191515 [ GGTTACTTTGCCAATGTCGGTGACCTTGATCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAATTTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCA ]
[+] EMBL AI975965 [ CAATGTCGGTGACCTTG TCATTCCTAGCTTGCTGTGCATTCCCTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAAATTTAGTGAG ]
[+] EMBL CD180718 [ AACAGGGAAATAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGGTGATCTTATTATTGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAAAGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACAAAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGACTTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAATGATGCGCCGCGAGCGCTCTCGACTTG ]
[+] EMBL AI975967 [ tGCTAGTAGAGAAATCGAGGCACATTTTAGAGAAACCCGGGTGATGCGCCGTGAGCGCTCTCGACTTGGTCAACCACTTTGGGTGGAAGAAGAATT ]
[+] EMBL CD198117 [ GGTCAACCACTCTGGTTGGAAGAAGAACTTCTGGAAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTTTTAGACGTGTTTCCATCATTATATNTTTTAATAAAACTGATATACTT AAAGAAAAGTTGAACTCACGTACATCAAATATT ]
[+] EMBL CD198119 [ GGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTTACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGACGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTNTTAGACGTGTNTCCATCATTATATTTTTTAATAAAACTGATAT ]
[+] EMBL CD198132 [ GGTCAACCACTCTGGTTGGAAGAAGAATTTCTGGAAATTGTACCGTCACTGAATGCAATACGGGAAGATGAAAGTGTTCGATTAGCATTCGACCAACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTTTAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTAAACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTATTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGACATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAACTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATCATATTGCTTTTAGACGTGTNTCCATCATTATATN ]
[-] EMBL CD198188 [ CTATGG TGTTTNTGAAGNACTTATCAATCATATTGCTNTTAGACGTGTTTCCATCATTATATTTTTTAATANAACTGATATACTT AAAGAAAAGTTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAATGGATCCATTCCGTCTGCAAGATGTTCAAACA TTTATGGTTGAAGTATTTGCCTCTCTAGTCAATCACAATTTTCCA CCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT AACGTACCATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATT ]
[-] EMBL CD195847 [ CTTNAANGAAAAGTTGANCTCACGTACATCAAATATCNGTGATGAGTTT CTAATTACCCTGTG AAATGGATCCATTCCGTCTGCAAGATG TC AACATTTTATGG TGAAGTA TTGCCTCTCTAGTCAATCACAATTTTCCACCCAGTTACTCAAGCTCGTTCAAGTCTTCNACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTG ]
[-] EMBL CD178177 [ TTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAATGGATCCATTCCGTCTGCAAGATGTTCAAACA TTTATGGTTGAAGTATTTGCCTCTCTAGTCAATCACAATTTTCCA CCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCAATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACT AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTGTTTGCGCCCTTGGATCTCACGTGAACACA ]
[-] EMBL CD195982 [ TCATTCAATGATACTGCTAAATGTTCATCTCTGCATAGACAAAACTCTGTACCTATATGCACT AACGTAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTG ]
[-] EMBL AI395287 [ ATGGCCAAAAATCTGTACGTATATCC CTGTAGGTAACATTTACAGCCCCTGTATGAAAACGTATGGTCTATCGTCATTTTACAACTGCTGTCGATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAGTAATTTACGTCGTATCATGATGAGCTAAGTACATATATATAAAGTTCATATATTTGGAGTATAAATTGTTTACTTCCATTTTCTGCTTTGGTTTAGTATGTTGTTTGCGCCCTTGGATCTCA GTGAACACAATATCTATACCTTCCGAAAATTAATTAAAAGTCTTACTCTTCGTGCTAACAATGTCTGTGCCAAATTCAAATTACCCCCAAAATCATCCGTACTACTAATAAAAAATGCACCCTTTTTATTTCATATTTTCTTATCCAATCATTGTCTTTCACGCTACTTAATTCTTCATTACATAAATATATGTGCTTTGTA]
consensusID : consensus_10195#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence
[TTCGTCACGTGGCGAAATATCGAAACGGTATTCAATGCTATGCATGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTNTGGTTTATTATGTTGCTTGCGCCCTTGGATCTCAGTGAAC]
[+] EMBL CD078067 [TTCGTCACGTGGCGAAATATCGAAACGGTATTCAATGCTATGCATGATACAGTGTTGCAAAATAATTTACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAATTGTTTACTTCCATTTTCTGCTNTGGTTTATTATGTTGCTTGCGCCCTTGGATCTCAGTGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10195#0 ACGGCTGGGTTACTTTGCCAATGTCGGTGACCTTGTCATTCCTAGCTTGCTGTGCATTCC 60
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 CTAAAGAGTCAATTGACGACCGTGAAATCATTAAGTGGCAGCAAAAACGTAACAGGGAAA 120
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TAGAAAAAGAACTGAAAAAGGAGAAAAGTCGTCTTCGTCAAAGACAGATGATCTTATTAT 180
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TGGGCACTGGTGAAAGTGGAAAAAGTACTTTTCTCAAGCAAATGAAAATTATTAATGGAA 240
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AGCATTTTACAAATCAAGAAATCGAACAGCTAAAAGATATTATCTATGATAACATATACA 300
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AAGGTGTTTTATTCCTACTCCAGGCTCGGGAAAGTCTCAATATTCCATGGGCTGGTGGAC 360
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TTGGTTCTGCTGCTGCTCAGGCTAGTAGAGAAATCGAGGCACATTTTAAAGAAACCCGAA 420
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TGATGCGCCGCGAGCGCTCTCGACTTGGTCAACCACTCTGGTTGGAAGAAGAATTTCTGG 480
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AAATTGTACCGTCACTGAATGCAATATGGGAAGATGAAAGTGTTCGATTAGCATTCGACC 540
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AACGTTCAAAAATTATTACAGAGAATTTCAGTGAGAATACACGCTATTATCTCAATCGTT 600
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TAAATCATATTGGTGTAGAAAATTATCGTCCAACTGATGAAGACATAGTTTGGTCACGTA 660
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AACCAACGGAATCTATAATTGAAGAAGAAATAAATGTTCACTCATCATCACTTGTTTTTA 720
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TTGACGTTGGTGGACAGACAAAAGAACGTCGTAAATGGTGTCAATGTTTTGCTGATATGA 780
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 CATCTGTCCTGTTCCTTATTGCTTCCAGTCATTACGATGAACATTATCAAGATCGATTAA 840
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 CTAAAGAATTTCGAAATAAACTACATGAAGCTATGGTTGTTTTTGAAGGACTTATCAATC 900
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 ATATTGCTTTTAGACGTGTTTCCATCATTATATNTTTTAATAAAACTGATATACTTAAAG 960
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 AAAAGTTGAACTCACGTACATCAAATATTCGTGATGAGTTTCCTAATTACCCTGTGAAAA 1020
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TGGATCCATTCCGTCTGCAAGATGTTCAAACATTTATGGTTGAAGTATTTGCCTCTCTAG 1080
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TCAATCACAATTTTCCACCAGATACTCAAGCTCGTTCAAGTCTTTCACACTCATCATTCA 1140
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 ATAATACTGCTAAATGTTCATCTCTTCATAGACAAAACTCTGTACCTATATCCACTAACG 1200
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TAACATTTACAGCCCCTGTACGAAAACGTATGGTCTATCGTCATTTCACAACTGCTGTCG 1260
consensus_10195#1 -----------------------------------------------------TTCGTCA 7
***
consensus_10195#0 ATAGGCGAAATATCGAAACGGTATTCAATGCTATGCAAGATACAGTGTTGCAAAATAATT 1320
consensus_10195#1 CGTGGCGAAATATCGAAACGGTATTCAATGCTATGCATGATACAGTGTTGCAAAATAATT 67
********************************** **********************
consensus_10195#0 TACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAA 1380
consensus_10195#1 TACGTCGTATCATGATGAGCTAAATACATATATATAAAGTTCATATATTTGGACTATAAA 127
************************************************************
consensus_10195#0 TTGTTTACTTCCATTTTCTGCTTTGGTTTATTATGTTGTTTGCGCCCTTGGATCTCACGT 1440
consensus_10195#1 TTGTTTACTTCCATTTTCTGCTNTGGTTTATTATGTTGCTTGCGCCCTTGGATCTCA-GT 186
********************** *************** ****************** **
consensus_10195#0 GAACACAATATCTATACCTTCCGAAAATTAATTAAAAGTCTTACTCTTCGTGCTAACAAT 1500
consensus_10195#1 GAAC-------------------------------------------------------- 190
****
consensus_10195#0 GTCTGTGCCAAATTCAAATTACCCCCAAAATCATCCGTACTACTAATAAAAAATGCACCC 1560
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 TTTTTATTTCATATTTTCTTATCCAATCATTGTCTTTCACGCTACTTAATTCTTCATTAC 1620
consensus_10195#1 ------------------------------------------------------------
consensus_10195#0 ATAAATATATGTGCTTTGTA 1640
consensus_10195#1 --------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||