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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10230#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1281 fasta sequence
[CGAGGCCAAAAATTGCGGCACGAGGTCCAATCAGCGTTTAAAAATGTAAATTTAGCCTTAAATTATATGACAAAAGGTGATTATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTAATTTATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGTCTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC-ATCG-GGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACATGAACAACAAAGATTCTTGATGGCTATGCAAG]
[+] EMBL CD081300 [CGAGGCCAAAAATTGCGGCACGAGGTCCAATCAGCGTTTAAAAATGTAAATTTAGCCTTAAATTATATGACAAAAGGTGATTATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTAATTTATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGACTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCCTTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATA ]
[+] EMBL CD154057 [ ctcttCAATCAGCGTTTAAAAATGTAAATTTAGCCTTAAATTATATGACAAAAGGTGATTATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTAATTTATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGTCTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTT ]
[+] EMBL AI976318 [ GATGTAAAGAATTTGATTAATTCATCGTCTCAACTAGACGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCCCGCCTCTGTTGAGTCTAATGAACATAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGC ]
[-] EMBL CD158479 [ GCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGA ]
[-] EMBL CD066265 [ ATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGCTACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTAAGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCA ]
[-] EMBL CD162139 [ AAGAACGTTTTCAAAATATTGGTATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATGCTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATTTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCG ]
[-] EMBL CD183167 [ TCGCGTTAATGCATTGATTAAATCTGCATGCNTATCAATGTCAGTTGATCAAGATGTAGCTGCTGNCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGNCCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAATGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAG ]
[+] EMBL CD077829 [ GTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCG ]
[+] EMBL AI976871 [ TGCACAAAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCACAATCG GGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAACGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAA ]
[+] EMBL AW017108 [ GTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGCTGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC ATCGTGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAA ]
[+] EMBL BF936321 [ AAGCCGGAATTTTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCACAATCG GGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAAGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACANAATGATTTATCACATTTAAT ]
[-] EMBL CD075130 [ ATTNTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGATATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAATTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC ATCGTGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACATGAACAACAAAGATTCTTGATGGCTATGCAAG]
[+] EMBL AI977661 [ TTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGAAAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGCAC ATCGTGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTTATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTATCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAAGCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAATTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACATGAACAACANAAATTCTTGATGGCTATGCAA ]
consensusID : consensus_10230#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[CCACACGTGAAACCGTAGATCAGACAGACAAGTAACTCCTTATGATCGCGATGAAGTTTCTTCTAATCCAGCTCAAAACAACAATGAAACACTAACTACTAATAGTACTATACGAAATACAATAAAACAAATCAAGTGCAACATTTCAAATTATTTATTCACTAGCCGAACTGAATCAAATCAAATGAAATTAAATTCCAATATGCACATAAATGATACTACTAATAAATCATCTTCTAAATTATCTAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAGTTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGG]
[+] EMBL CD061537 [CCACACGTGAAACCGTAGATCAGACAGACAAGTAACTCCTTATGATCGCGATGAAGTTTCTTCTAATCCAGCTCAAAACAACAATGAAACACTAACTACTAATAGTACTATACGAAATACAATAAAACAAATCAAGTGCAACATTTCAAATTATTTATTCACTAGCCGAACTGAATCAAATCAAATGAAATTAAATTCCAATATGCACATAAATGATACTACTAATAAATCATCTTCTAAATTATCTAATCAAAATGAAAATGAGTTGGATGACAAAGAAAGCAATAGCATCACCACAAGTTCAAATAATACTGACACCCTCAATAAAAATAAAACAAATGAATCTATTCAAGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10230#0 CGAGGCCAAAAATTGCGGCACGAGGTCCAATCAGCGTTTAAAAATGTAAATTTAGCCTTA 60
consensus_10230#1 ---------------CCACACGTGA---AACCGTAGATCAGACAGACAAGTAACTCCTTA 42
* **** * ** * * * * * * ** * *****
consensus_10230#0 AATTATATGACAAAAGGTGATT--ATCAACAGTCAGCTGACTATTCAATGAAAGCTGTTA 118
consensus_10230#1 TGAT-CGCGATGAAGTTTCTTCTAATCCAGCTCAAAACAACAATGAAACACTAACTACTA 101
* ** ** * * *** * * ** ** ** * ** **
consensus_10230#0 ATT-TATTCGAAAGAATCTTATCGGGTAAGTCGTTCTCAGATGTAAAGAATTTGATTAAT 177
consensus_10230#1 ATAGTACTATACGAAATACAATAAAACAAATCAAGTGCA-ACATTTCAAATT--ATTTAT 158
** ** * * *** ** ** ** ** * * **** *** **
consensus_10230#0 TCATCGTCTCAACTAGA-CGATCGAAATGGTGAAACAATTTCAAAACCAAATGACAATCC 236
consensus_10230#1 TCACTAGCCGAACTGAATCAAATCAAATG--AAATTAAATTCCAATATGCACATAAATGA 216
*** * **** * * * ***** ** ** *** ** * ***
consensus_10230#0 CGCCTCTGTTGAGTC------TAATGAACATAATCAAAATGAAAATGAGTTGGATGACAA 290
consensus_10230#1 TACTACTAATAAATCATCTTCTAAATTATCTAATCAAAATGAAAATGAGTTGGATGACAA 276
* ** * * ** *** * ******************************
consensus_10230#0 AGAAAGCAATAGCATCACCACAAATTCAAATAATACTGACACCCTCAATAAAAATAAAAC 350
consensus_10230#1 AGAAAGCAATAGCATCACCACAAGTTCAAATAATACTGACACCCTCAATAAAAATAAAAC 336
*********************** ************************************
consensus_10230#0 AAATGAATCTATTCAAGTGTATATTAAAGAAGTATATAATCAAATTTCACTTTTACACGC 410
consensus_10230#1 AAATGAATCTATTCAAGTGG---------------------------------------- 356
*******************
consensus_10230#0 TACTTATCAAGCATTAGCTGGACGTTCTGAAGAAGCAAAAGAACGTTTTCAAAATATTGG 470
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TATGGTAGACTCTGGAGCTTCATTAGTGGTTCGCGTTAATGCATTGATTAAATCTGCATG 530
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 CTTATCAATGTCAGTTGATCAAGATGTAGCTGCTTGCCTTTATGATTTTCAACGTGCACA 590
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 AAATGTTTGGCCTGAATGTCCGGATGTTTATCTTCATCGAGGACAAATTAATTTATTAGC 650
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TGACCAATTAGATGAAGCATTGCATGATTTGAATACAGCTGTTAAATTAAAGCCGGAATT 710
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TTCAGTTGCACAGGCTCAACGTTTGTACACCCTATATCGATGCGCATTAACTGCCGGTGA 770
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TATTAGCAAAGTGGATTCTCGTATTGAAGAGTTTCGTCGATTAGTGAAGAAATACCCCAA 830
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TTGTTTAGAAACTCATTCCTTATTTGCTCAGATCCTGTCTGAACGTGGTGATTTTAAAGA 890
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 AAGTGATAAAATATTTGCTGATTTAATAACCTTAGCACCAGATTCTGGATTAGCCTATGC 950
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 ACATCGGGTTTATTACAATTAAAATGGAAACAAGATCGTGATGCAGCATTATGTTTTTTT 1010
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 ATAGAAGGTATACAAAAAGATCCTAAATGTGAATTAATACATGAATTACTTGGTCAATTA 1070
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TCAGTAGAAAAGGGTCAATTTAATGAAGCATTAAAACATTTTGATATGGCAATAAAACAA 1130
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 GCTAAAACACAAAATGATTTATCACATTTAATAGCATTACGTGAAGGTGTTAATGCCCAA 1190
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 TTAAAAGTATGTGAACAATATAAAATATCAATACCGGATGTATTATCAAGTATACAACAT 1250
consensus_10230#1 ------------------------------------------------------------
consensus_10230#0 GAACAACAAAGATTCTTGATGGCTATGCAAG 1281
consensus_10230#1 -------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||