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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 636 fasta sequence
[AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACGAAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAGACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATTCGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACTATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAAAAAC]
[-] EMBL CD169282 [AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACGAAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAGACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATTCGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACTATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTT ]
[-] EMBL CD169237 [AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACGAAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAGACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATTCGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACTATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTT ]
[+] EMBL CD138950 [ CCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAAAAAC]
consensusID : consensus_10234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 538 fasta sequence
[AGGGCTACTTTGCAGGTTTGGTTCTCCTATGTCGTGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTT-TATATCTGAAGATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATAATTGTAGTCTCAAATAGAAGTTTCA]
[+] EMBL CD079779 [AGGGCTACTTTGCAGGTTTGGTTCTCCTATGTCGTGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTT TATATCTGAAGATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGACAAATAATTGTAGTCTCAAATAGAAGTTTC ]
[+] EMBL CD079961 [ gtTACTTTGCAGGTTTGGTTCTCCTATGTCGTGATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTN TATATCTGAAGATGCGTTCGAACTA ]
[-] EMBL CD194291 [ TTTGCAGGTTTGGTTCTCCTATGTCGT GATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGC ]
[-] EMBL CD074037 [ CAAACTGCTGCAGTTTCCACCCATAGTTCCCTTATATCCCCCAATTTTCAGGAAGCAAACCAATAGCCGCCTGCTGAGAATGGGCCCCCTTTTCTCCAAACGTCAAAGTGCAGAATTCCCCTTGATCCCATTTGAAAAAGTAAGCGGCCCTTTGGGCCTAGGTGCCCCTGAAAGTAACGAAATCCCGAAGGTTGAAGAAGAGAGCTTTATCCCTGCGCTTATGCCCGATAGATTGAGAACTAACCAATGTGCGGAGCTTTGGGACGAATGGTCAAACTGTACAAAAACATACTATTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCATTAGAATGCACCAAAAAATCCCTCCAAGCCCCTGAGTTTTTCGAAAAGACGAAGGCTT TATATTTGAAAATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATAATTGTAGTCTCAAATAGAAGTTTCA]
[-] EMBL CD132130 [ TTCCAACAATAGTTGCCTNATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAACATACTACTGGGCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATGCAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTTATAT TCTGAAGATGCG ]
[+] EMBL CD139005 [ CCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGCACAAAAAC ]
[+] EMBL CD138986 [ CCATAGTTGCCTTATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCAAACTGTACAAAAAC ]
[-] EMBL CD074155 [ TTTTTTCCAAAGGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAAAAGTAAACGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCCCGAAGGTTGAAAAAAAGAGCTTTATCCCTGCGCTTATGCCCGATAGATTGAGAACTAACCAATGTGCGGAGCTTTGGGAAGAATGGTCAAACTGTACAAAAACATATTTTTGGGCAGCGATATACATTTGCAAGACGGGCTTTCATAAGGCGGTAGAATGCAACAAAAAATACCTCCAAGACCCTGAGTTTTTTGAAAAAACGAAGGCTT TATATTTGAAAATGCGTTCGAAATACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATAATTGTAGTCTCAAATAAAAGTTTCA]
consensusID : consensus_10234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 339 fasta sequence
[TACTCTTGTGATTTGTTGCATGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCATATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAGAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCGAAACTGTACATAAAACATACTACTGCGAGGTACGTC]
[-] EMBL CD119538 [TACTCTTGTGATTTGTTGCATGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCATATATCCCACAATTCTCAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAGTGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAGAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGA ]
[+] EMBL CD180503 [ TGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCCTGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCGAAACTGTACATAAAACATACTACTGCGAGGTACGTC]
consensusID : consensus_10234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 317 fasta sequence
[GATGGAATTCTATATCAATTATTTGTATTAGGTGTTATTTTAGCCTGTTTGATGTAAAGTAATGTGTAATTTAGCATGTTAAGCTGGTTGCTAAAACTTTGACACTTAAACCTTTCTGCAGGTGACCCTAAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAANAACATACTACTGGGCAGCGATATACATTTTGCAGAC]
[+] EMBL CD144322 [GATGGAATTCTATATCAATTATTTGTATTAGGTGTTATTTTAGCCTGTTTGATGTAAAGTAATGTGTAATTTAGCATGTTAAGCTGGTTGCTAAAACTTTGACACTTAAACCTTTCTGCAGGTGACCCTAAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGATAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTATTGTTCACTACGAAATGTTCTGTTTTTAGAATGGTCAAACTGTACAANAACATACTACTGGGCAGCGATATACATTTTGCAGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10234#1 ------------------------------------------------------------
consensus_10234#2 ------------------------------------------------------------
consensus_10234#0 AAAAAGGCACTCACCAGCCCTGTAATTTCTAATATTTACATGATTTTCTACCAACCAACG 60
consensus_10234#3 ------------------------------------------------------------
consensus_10234#1 ------------------------------------------------------------
consensus_10234#2 ------------------------------------------------------------
consensus_10234#0 AAAATTTTGTTCATTTGGTTTTCACATGCGTCATTGTTAAACTATGTAACCAAGTTGGAG 120
consensus_10234#3 ------------------------------------------------------------
consensus_10234#1 ------------------------------------------------------------
consensus_10234#2 ------------------------------------------------------------
consensus_10234#0 ACCTCAAGTAAGGTAATAAACCTTGTTAACAATTGCAAATCTCCTTAATATTGAGTGATT 180
consensus_10234#3 ------------------------------------------------------------
consensus_10234#1 ------------------------------------------------------------
consensus_10234#2 ------------------------------------------------------------
consensus_10234#0 CGACTTAGATGTTCGTGAAAAAGCACTAACCTTGGATCCAGACTTGTATGCAAAAACACT 240
consensus_10234#3 ------------------------------------------------------------
consensus_10234#1 -----------------------AGGGCTACTTTGCAGGTTTGGTTCTCCTATGTCGT-G 36
consensus_10234#2 ------------------------------------------TACTCTTGTGATTTGT-T 17
consensus_10234#0 ATACATCTACTGTTTTTAAGAGTCGCTGAATTTTTCAGTATATTTGTTCATTTCCGATAG 300
consensus_10234#3 ------------------------------------------------------------
consensus_10234#1 ATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCT 96
consensus_10234#2 GCATGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCATATATCCCACAATTCT 77
consensus_10234#0 ATTAGATGGTAACAAACTGCTGCAGTTTCCAACCATAGTTGCCTTATATCCCACAATTCT 360
consensus_10234#3 ---------------------------------GATGGA-ATTCTATATCA-ATTATTTG 25
** * ****** * ***
consensus_10234#1 CAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAG 156
consensus_10234#2 CAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAG 137
consensus_10234#0 CAGGAAGCAAAACAATAGACGACTGCTGAGAATGGGCACCCTTTTCTCCAAACGTCAAAG 420
consensus_10234#3 TATTAGGTGTTATTTTAGCCTGTT--TGATGTAAAGTAATGTGTAAT-------TTAGCA 76
* * * * *** * * *** * * * * * * *
consensus_10234#1 TGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCC 216
consensus_10234#2 TGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCC 197
consensus_10234#0 TGCAGAATTCGCCTTGATCCCATCTGAAGAAGTAAGCGGCCCTTTGGGCCTAGGTGACCC 480
consensus_10234#3 TGTTAAGCTGG--TTGCTAAAACTTTGACACTTAAAC----CTTTCTGC--AGGTGACCC 128
** * * * *** * * * * * *** * **** ** *********
consensus_10234#1 TGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 276
consensus_10234#2 TGAGAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 257
consensus_10234#0 TGAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 540
consensus_10234#3 TAAAAGTAACGAAATCACGAAGGTTGAAGAAGAGAGCTTTATACCTGCGCTTATGCACGA 188
* * ********************************************************
consensus_10234#1 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTC-AAACTGTACA-AAA 334
consensus_10234#2 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGAATGGTCGAAACTGTACATAAA 317
consensus_10234#0 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTA-TTGTTCACTACGAA 599
consensus_10234#3 TAGATTGAGAACTAAACAATGTGCGGAGCTCTGGGACGGTAAGTA-TTGTTCACTACGAA 247
************************************** ** * * **
consensus_10234#1 ACATACTACTGG-GCAGCGATATACATTTGCAAGACGGACTTTCATAAGGCACTAGAATG 393
consensus_10234#2 ACATACTACTG------CGAGGTACGTC-------------------------------- 339
consensus_10234#0 ATGTTCTGTTTTTAGAATGGTCAAACTGTACAAAAAC----------------------- 636
consensus_10234#3 ATGTTCTGTTTTTAGAATGGTCAAACTGTACAANAACA--TACTACTGGGCAGCGATATA 305
* * ** * * * *
consensus_10234#1 CAACAAAAAATACCTACAAGACCCTGAGTTTCTCGAAGAGACGAAGGCTTTATATCTGAA 453
consensus_10234#2 ------------------------------------------------------------
consensus_10234#0 ------------------------------------------------------------
consensus_10234#3 CATTTTGCAGAC------------------------------------------------ 317
consensus_10234#1 GATGCGTTCGAACTACAGGAGGACGGGGCTGGAGCAACGCGTTGTACGAACCGCCAAATA 513
consensus_10234#2 ------------------------------------------------------------
consensus_10234#0 ------------------------------------------------------------
consensus_10234#3 ------------------------------------------------------------
consensus_10234#1 ATTGTAGTCTCAAATAGAAGTTTCA 538
consensus_10234#2 -------------------------
consensus_10234#0 -------------------------
consensus_10234#3 -------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||