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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1203 fasta sequence
[TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA-TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA-TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT-TGGGC-TTGATTTTG-GTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTTGCAT]
[+] EMBL AI975206 [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGTTACATCCTCAGCACTGTGTGTGGAAAGACTGAATCTt ]
[+] EMBL BE431220 [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGATTCCATTGTTTCCTTCG CACAAAGTGACTGg ]
[+] EMBL AW017001 [TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATTTGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATGATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCA ]
[-] EMBL CD084299 [ AAAATATACACTAATGTATGAAAGTGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGAGTCGAGA TCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAAGCGAGTACATAGTTGCATGAGCAATAAATGTATTATCCAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCCGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGAT GCCGc ]
[+] EMBL CD062543 [ gTTCTGTCGTCACAATGTGACCGATCCGTGTATAGTCCGATACAAAGTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCCGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT TGGGC T ]
[+] EMBL CD063190 [ ccTCCTTTACAAAGTGAGTACATACTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGAT ]
[-] EMBL CD084260 [ TACATAGTTGCATGAGCAATAAATGTAGTATCTAATGAAGAATGAAATAGTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGATTATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTATCTGGGCGTGGATTTTGCGTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAG ]
[-] EMBL CD084241 [ GTTCACTGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTCTCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATCGAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGA TATGAGATATGATTTATTATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT TGGGC TTGATTTTG GTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAc ]
[+] EMBL CD068003 [ TATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGCCGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAGGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGTAT TGGGC TTGATTTTG GTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTTGCAT]
[+] EMBL CD200385 [ AAATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTGGTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGNTGCGTGAATCAGAGCGTTTCCCCTTCACGTTNGAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTG ]
[-] EMBL CD071331 [ TCTTGA TTTCTAGTC GTAAGCCAAATGGTTCGGAGCAAACAAACNCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTNTGGTCTGTATTTCCTGCCATTCATNTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGCTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTT ]
[-] EMBL CD071382 [ aTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACNCAAAACGTAGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCTTGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGCAGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTT ]
[-] EMBL CD064224 [ ATTTAAGAGGTTGCGTGAATCAGAGCGTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTCCTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCG ]
consensusID : consensus_10260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 356 fasta sequence
[TATCCAATGAAGAGTGAAATAGATCACTGAAAGGTCCACTAGCATAAATCGGTACATCCTCAGCACTGTGTGTAGAAGTACTGAGGCTCACCAGTGATTCTGCTGTATAGTTGCTTGCGAATCTATCTTCTGTTGCCGGATCCGATCGAGGTGCACCTAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTATTATCATCTCCTTTTGCGGTATTATCCACATCTAGCACACTTGTATTTCTTGTCGGATAGCCGACAACTCCGTATGCATGAGAATGGTCCGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCACGCTTG]
[-] EMBL CD061233 [TATCCAATGAAGAGTGAAATAGATCACTGAAAGGTCCACTAGCATAAATCGGTACATCCTCAGCACTGTGTGTAGAAGTACTGAGGCTCACCAGTGATTCTGCTGTATAGTTGCTTGCGAATCTATCTTCTGTTGCCGGATCCGATCGAGGTGCACCTAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTATTATCATCTCCTTTTGCGGTATTATCCACATCTAGCACACTTGTATTTCTTGTCGGATAGCCGACAACTCCGTATGCATGAGAATGGTCCGCTGTTACTAATAGTAACGTTTCTTGTTGATCAACAAGTGACAATGCTTTCTCACGCTTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10260#0 TAGTTTTATTTGACCAGTGTATTAATTCAAAAATAAGTGTTTGTGCATCCATTAATCATT 60
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 TGATGAATTTTTGTCTAATCTAACCTAATAAATATTACAAATAATAAATATACTTACATG 120
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 ATTAACATGAAATTAATAATTTAAACAAAATACCACAAAATATACACTAATGTATGAAAG 180
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 TGTACAAAATAATACTGAGAAATAGTAAATAATAAAAGTTATTCAGATGAAGTCCACTGA 240
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 GTCGAGATCCATTGTTTCCTTCGTCACAATGTGACTGATCCGTGTATAGTCCGATACAAA 300
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 GTGAGTACATAGTTGCATGAGCAATAAATGTATTATCTAATGAAGAATGAAATAGTTCAC 360
consensus_10260#1 ---------------------------------TATCCAATGAAGAGTGAAATAGATCAC 27
**** ******** ******** ****
consensus_10260#0 TGTAAGGTCCATTAGCATAAATCGGTACATCCTCAGCACTGTGTGTGGAAAGACTGAGTC 420
consensus_10260#1 TGAAAGGTCCACTAGCATAAATCGGTACATCCTCAGCACTGTGTGTAGAAGTACTGAGGC 87
** ******** ********************************** *** ****** *
consensus_10260#0 TCACCAATGATTCTGCTGTGTAGTTGCTTGCGAATCTATCCTCTGTTTCTGGATCAGATC 480
consensus_10260#1 TCACCAGTGATTCTGCTGTATAGTTGCTTGCGAATCTATCTTCTGTTGCCGGATCCGATC 147
****** ************ ******************** ****** * ***** ****
consensus_10260#0 GAGGTGCATCCAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTAT 540
consensus_10260#1 GAGGTGCACCTAATATACCTCTTGGTCCATTGAAAAAGGAGGATATGAGATATGATTTAT 207
******** * *************************************************
consensus_10260#0 TATCATCTCCTTTTGCAGTATTATCCACATCTAGCACACTTATATTCCTTGTCGGATGGC 600
consensus_10260#1 TATCATCTCCTTTTGCGGTATTATCCACATCTAGCACACTTGTATTTCTTGTCGGATAGC 267
**************** ************************ **** ********** **
consensus_10260#0 CGACCACTCCGTATGCATGAGAATGATCAGCTGTTACTAATAGTAACGTTTCTTGTTGAT 660
consensus_10260#1 CGACAACTCCGTATGCATGAGAATGGTCCGCTGTTACTAATAGTAACGTTTCTTGTTGAT 327
**** ******************** ** *******************************
consensus_10260#0 CAACAAGTGACAATGCTTTCTCGACGGCTTTTTCCAACTCCAAAGTTTCAGTTAACGCGT 720
consensus_10260#1 CAACAAGTGACAATGCTTTCTC-ACGCTTG------------------------------ 356
********************** *** *
consensus_10260#0 ATTGGGCTTGATTTTGGTGATTCCCATGATCAATTCTGCCTCCTTCAACTAACAGAAGAA 780
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 ATCCTTTAGGATTGCGAGAAAGTACTTTGATAGCAGCTTCTGTCATTTCTGCCAAAGTTG 840
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 GTTGGTCTTGATTTTCTAGTCGGTAAGCCAAATGGTTCGGAGCAAACAAACCCAAAACGT 900
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 AGTCAACCGAAGACCAGTCGGTTTGTTTAAACTCATTGTTTGTATGTAAGAGAACATGCT 960
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 TGTGGTTCATTTTGGTCTGTATTTCCTGCCATTCATTTAAGAGGTTGCGTGAATCAGAGC 1020
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 GTTTCCCCTTCACGTTGAAAGTGGTATTGTCTGATGGACCATAGAATTCGGCTGCTCCTC 1080
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 CTCCCATTATGACGTTGACATGAGAAGCGTTAGTTAGTAGTTGTGCAGCGGCGTCTGTGC 1140
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 AGTGGAATGCGTGCTCGTTTGATGGAACTTTTGACTCCCAATCTCGATGTAACATATTTG 1200
consensus_10260#1 ------------------------------------------------------------
consensus_10260#0 CAT 1203
consensus_10260#1 ---
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||