cluster # 10304

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Schistosoma mansoni
cluster # 10304 cluster # 10304 Sequences # 15 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10304#0 length = 773 sequences # 13

consensus_10304#1 length = 417 sequences # 2

consensusID : consensus_10304#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 773
fasta sequence

                              [TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGA---AAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG-AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCACTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA]

[+] EMBL AI975398             [TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGAAAGAAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATA                                                                                                                                                                                                                                        ]
[+] EMBL CD157446             [                     ACTTTTTCAGGTGA   AAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTCCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTCCTA                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD157445             [                       TTTTTCAGGTGA   AAGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTC                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD157440             [                                       AGTCAAGACGACCAAAGTTCTACGAGGCATCGTTCACATATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAATACGCAAAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCGTCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTC                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD196441             [                                                                                      GAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTTACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAAGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTAGTTGTTCGACAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTA                                                                                                                                                                                                                                   ]
[+] EMBL CD196618             [                                                                                      GAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTGAGATCAAAACGCATAGTCATTGCAAACATCCCATATAATTTAAATTGGCAGAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTTACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAAGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTAGTTGTTCGACAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATTGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCC                                                                                                                                                                                                                                                                              ]
[+] EMBL CD096161             [                                                                                                                                                              TGATTTAAATTGGCAAAAGCTGAAGGAGTTGTTTAGAGAACAAATCGGGTTTACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAA                                                                                                                                                   ]
[+] EMBL CD159442             [                                                                                                                                                                                  TGAAGGAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCACTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA]
[+] EMBL CD159384             [                                                                                                                                                                                  TGAAGGAGTTGTTTAAAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGAAAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGG AGCACAAAAGGCTTTTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGCAACATGGCAGAGGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTATAAGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTTCTGCTCCAGTAAACATACTGTA]
[+] EMBL CD162547             [                                                                                                                                                                                                                                                                 GGGTTTGATGGACTTCAAGACACTCTAAGGCAGCACCAAAGGCTATTGAGACCCTGCATCGGTTTGAAGTTGGGGACCGAACGTTGGTTGCTCGGCAAGAGACTGCTCGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCT                                                                                                                                               ]
[+] EMBL CD090578             [                                                                                                                                                                                                                                                                              TTCAAGACACTCGAAGG AGCACAAAAAGCTATTGAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTAGTTGTTCGACGAGAGACTGCTCGTGATGCTGCTCGCTTATCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAAAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAG                                                                                                                                                       ]
[+] EMBL CD183104             [                                                                                                                                                                                                                                                                                                                                                                                                            gggaGGAGGGCTTCTAAGTGATTCTACAAATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATT                                                                                                                                                 ]
[+] EMBL BG932703             [                                                                                                                                                                                                                                                                                                                                                                                                               tgcgGGCCTTCTAAGTGATTCTACAAACCCCAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTAGGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTATAGTGTAACATGGCAAAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACA                                                                                                                                                                 ]




>consensus_10304#0
TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGAAAGTCAAGACGACCAAAGTTCTACG
AGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTG
AGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAG
GAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGA
AAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGGAGCACAAAAGGCTATT
GAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCT
CGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACA
AATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTA
GGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTAT
AGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCG
GTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAAT
GCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCA
CTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA

consensusID : consensus_10304#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 417
fasta sequence

                              [CAGGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAAAGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACTTTATCCTCCATCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT]

[+] EMBL CD152668             [CAGGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAATCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAAATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAAAGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACTTTATCCTCCATCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT]
[+] EMBL CD152670             [CAAGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAATCTTG                                                                                                                                                                                                                                                                                                    ]




>consensus_10304#1
CAGGATGGATCAGACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATA
TCTACCGTGGGGTGCACACACGATGTCGACGGCTTTTCTTTCACATCCTTACGTCAGTAA
TCTTGACTATAGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAAT
TCTCAGCGCGGTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAA
ATTTTCGAATGCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAA
AGATAGACCAATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACT
TTATCCTCCATCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10304#0      TGTCCGTTTACATCCATGAGTACTTTTTCAGGTGAAAGTCAAGACGACCAAAGTTCTACG 60
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      AGGCATCGTTCACCTATCAAAAGGAGATCAAGAAGTCGTTCTCCTAATGTGAGTCGAGTG 120
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      AGATCAAAACGCATAGTCATTGCAAACATCCCATATGATTTAAATTGGCAAAAGCTGAAG 180
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      GAGTTGTTTAGAGAACAAATCGGGTTCACTGGATTTCTACAGTTGTTTAAAAAAAATGGA 240
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      AAACCAAACGGAATGGGTTTGATGGAGTTCAAGACACTCGAAGGAGCACAAAAGGCTATT 300
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      GAGACAATGCATCGGTTTGAAGTTGGAGACAGAAAGTTGGTTGTTCGGCAAGAGACTGCT 360
consensus_10304#1      ------------------------------------------------------------
                                                                                   

consensus_10304#0      CGTGATGCTGCTCGCTTAGCATCAATGGAAGTTGACGGAGGGCTTCTAAGTGATTCTACA 420
consensus_10304#1      ------------------------------------------------CAGGATGGATCA 12
                                                                          ***    **

consensus_10304#0      AATCCTAACGAGTCTGTAAATATGGCAGCAACAGGACCTGTTTTTACTCCTCAAATGTTA 480
consensus_10304#1      GACTTTGGAAATTCTAAGCGTCGAAAAACATCTAGAACATTTGATATATCTACCGTGGGG 72
                        *   *    * ***     *     * ** *  ** *  **  **   **    **   

consensus_10304#0      GGTCAGGTCGGCATAGACGGGCCAGTCACTGATTCTGTGTACGTCAGTAATCTTGACTAT 540
consensus_10304#1      TGCACACACGATGTCGACGG-CTTTTCTTTCACATCCT-TACGTCAGTAATCTTGACTAT 130
                        *      **   * ***** *   **  * *     * *********************

consensus_10304#0      AGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCG 600
consensus_10304#1      AGTGTAACATGGCAGAAGCTTAAGGATGTCTTCAAATCGGCTGGGAAAATTCTCAGCGCG 190
                       ************************************************************

consensus_10304#0      GTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGTTGGCATATTAAAATTTTCGAAT 660
consensus_10304#1      GTTATAAAAACAGACTCAGAAGGGAATTCTCGTGGTGATGGCATATTAAAATTTTCGAAT 250
                       ************************************* **********************

consensus_10304#0      GCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACACCCAGATATTAAAAGATAGACCA 720
consensus_10304#1      GCTTATGAAGCAGTCCAAGCAGTCAATATGTTTAACAACCAGATATTAAAAGATAGACCA 310
                       ************************************* **********************

consensus_10304#0      CTGCGTGGGAAGATTGATCGTCAGGGTACCTCTGCTCCAGTAAACATACTTTA------- 773
consensus_10304#1      ATGCGTGTGAAGATTGATCGTCAGGGTACTCCTGCTCCAGTAAACATACTTTATCCTCCA 370
                        ****** *********************  **********************       

consensus_10304#0      -----------------------------------------------
consensus_10304#1      TCACAAAGAACAGGCTCATCTGGAATTCTGGGTTCCACTAGTTCAAT 417