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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10348#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1158 fasta sequence
[CGGGCCAGAATTCGGCACGAGG-GTCGCG--AGG--TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG-CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT-AAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATATAATTAATGAGATCTAANAAAAAAAAAAAAAA]
[+] EMBL CD078162 [CGGGCCAGAATTCGGCACGAGG GTCGCGGTATGCTTGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGGAACGCCAATTACCTTTTCGGGCAGAT ]
[+] EMBL CD083726 [ aTCGGCACGAGGCGGCACG AGG TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAGACGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGATACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAGAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAA ]
[+] EMBL AI977713 [ TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGATACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGGTGCTGTGAATTG TTCAAATGAGCTAG ]
[+] EMBL AW017320 [ gct TGAGTCGCCCGCAACCGTAGCTTCTGCAACCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAG CGAATTTCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGATACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGG ]
[+] EMBL CD180887 [ TAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAGACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCANATGAGCTAGAAGATTTA ]
[+] EMBL CD084255 [ TAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTCGTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCACATGAGCTAGAAGATat ]
[+] EMBL CD083869 [ cacgaggCCATATTTGCACACAAAGAGTCATCGG TCGTCGTATGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTGTTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAGAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGC ]
[-] EMBL CD115048 [ AAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAGAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGCTCTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTC ]
[+] EMBL AA999218 [ TTCGGGCAGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATG AAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGCCAATAATTGGATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCCCATCCAACTTTTTT ]
[+] EMBL SMAA43874 [ AGATAAAGGTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT AAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGGTTTCATTTGGTTTGGCATTAATTGAATATTTTCTTATATATATAATATCTCTTTTAGAGTTATATTCATGTGCTca ]
[-] EMBL BG932837 [ ACAAGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAAAAGTGATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAAGTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAAT A ]
[-] EMBL AI394758 [ GATTATTCAAATAAAACCTGGTGGTGCTTATATATTCACTTATCGCTGTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATGGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATATAATTAATGAGATCTAANAAAAAAAAAAAAAA]
[+] EMBL SM702 [ GAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGNTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATGGATTACTTNGNTAATAAATATAATn ]
consensusID : consensus_10348#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 574 fasta sequence
[CCCTCCGAGCCAANAATTCGGCACGAGGTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATA]
[+] EMBL CD082049 [CCCTCCGAGCCAANAATTCGGCACGAGGTGATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAAT ]
[-] EMBL CD075662 [ GATTGTTGCTGTGAATTGTTTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCGCTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATATAATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCTGTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATAGAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAACTCGAGCTGATGTACGTACGTACAAAGTTTTACGTTGTGACTGACTGACTGACTGACTGACTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACATGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTATATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10348#0 CGGGCCAGAATTCGGCACGAGGGTCGCGAGGTGAGTCGCCCGCAACCGTAGCTTCTGCAA 60
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 CCCAAAGGTTGGTCCCCAGAAGGCAAACAATAGAAGATGCTTATTCACCACCAGCGAATT 120
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 TCTTAGAGATTGACGTGTGCAACCCTCTCACTCACGAGGATGGTAAAGACCGCTTCACAG 180
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 ACTACGAAGTTAGTCTCAGGACAAATTTACCCATATTTGCACACAAAGAGTCATCGGTTC 240
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 GTCGTAGGTACAGCGATTTCAAATGGCTTCGTGACGAACTGGACCGTGAAAGCAAGATTG 300
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 TTGTTCCTCGATTACCAAGCAAAGCATGGAAACGCCAATTACCTTTTCGGGCAGATAAAG 360
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 GTATATTTGATGAGGATTTCATCGAGGAGCGACGAAAAGGACTAGAAAATTTCATTAACA 420
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 AGGTGGCTGGACATCCATTAGCTCAAAATGAAAAATGTTTACATATGTTTCTTCAAGAAA 480
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 AAGTAATTGATCGTAATTGTCGACTTGGAAAGTTACGTAACATTTAATTAAAGGAATCAA 540
consensus_10348#1 ------------------------------------------------------------
consensus_10348#0 GTATAATCCAATTTACAAAATCAATTCATTCAATATAATCTGATTGTTGCTGTGAATTGT 600
consensus_10348#1 -----------CCCTCCGAGCCAANA-ATTCGGCACGAGGTGATTGTTGCTGTGAATTGT 48
* * *** **** * * ********************
consensus_10348#0 TTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCG 660
consensus_10348#1 TTCAAATGAGCTAGAAGATTTATCAAATAAACCTGGTGGTGCTTATATATTCACTTATCG 108
************************************************************
consensus_10348#0 CTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATAT 720
consensus_10348#1 CTTTCTTCTTTTACTGTTTTCATTTGTTTTGTCATTAATTGTATATTTTCTTATATATAT 168
************************************************************
consensus_10348#0 AATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCT 780
consensus_10348#1 AATATATCTTTTAGAGTTATATTCATGTGCTTATCCAACCTTTTTCCCCAATATTTCTCT 228
************************************************************
consensus_10348#0 GTTTTTTCCCATGGACACACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATA 840
consensus_10348#1 GTTTTTTCCCATGGACAAACTACTTCACATTCATAAAACGCTAATATATTGTTAGTCATA 288
***************** ******************************************
consensus_10348#0 GAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAA 900
consensus_10348#1 GAGAGGATTACTCATTTCTGTCAGTTCTCTATTCATCTCTGTATTAATTTGGTATGGCAA 348
************************************************************
consensus_10348#0 CTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGA 960
consensus_10348#1 CTCGAGCTGATGTACGTACGTACAAAGTTCTACGTTGTGACTGACTGACTGACTGACTGA 408
************************************************************
consensus_10348#0 CTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACA 1020
consensus_10348#1 CTATCTATTTAAGAAACTTTTCGTCATATCTCCAAGTATCAATATATTCGTTTGCATACA 468
************************************************************
consensus_10348#0 TGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTA 1080
consensus_10348#1 TGTGTGTGTATTCATTTGCCTATCTCTAGGATCATCAGTAAATGTACTAATCATTGTTTA 528
************************************************************
consensus_10348#0 TATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATATAATTAATGAGATC 1140
consensus_10348#1 TATATATATTAATACTGTGATTCATTGATTACTTTGCTAATAAATA-------------- 574
**********************************************
consensus_10348#0 TAANAAAAAAAAAAAAAA 1158
consensus_10348#1 ------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||