|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10362#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1303 fasta sequence
[CATCGTCTTCACCATTATTATCATCATTTTCCATTTCATCCAGATTTAAATTAGTCCATATTTCTTCAAGTAGATTATCATTATCGGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTAAATGAAGTAATGCACGAGAACATTCTAGTTGATACGTGAAATCACCGCATTTTTGTTTGTTAGATTTATGATTATTTGATTCGGTAGATGTATGCAGTTCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT-TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAATACGGAATGATGAAAAGATGAT-TTTATGTTTTTCATTTTTATTAGCGCTAAACCCGACAGATGTGACTTCTTCTCGGAGATTTGTCTT]
[+] EMBL CD197446 [CATCGTCTTCACCATTATTATCATCATTTTCCATTTCATCCAGATTTAAATTAGTCCATATTTCTTCAAGTAGATTATCATTATCGGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTAAATGAAGTAATGCACGAGAACATTCTAGTTGATACGTGAAATCACCGCATTTTTGTTTGTTAGATTTATGATTATTTGATTCGGTAGATGTATGCAGTTCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTT ]
[+] EMBL CD127475 [ TCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAAGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAAGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTACCTGAAGTTATGAAATCTA ]
[-] EMBL CD127180 [ CGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCAGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCC ]
[-] EMBL CD171471 [ CACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGT ]
[+] EMBL CD168204 [ CTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCAT ]
[+] EMBL CD139882 [ TCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCAAGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAA ]
[+] EMBL CD168212 [ CGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCAT ]
[+] EMBL CD168223 [ CGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACTTTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCAT ]
[-] EMBL CD171328 [ CCGTTTTAGTACCTCGTCTGCTGAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCGTCTCATCACACTGACTACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAAgtaata ]
[-] EMBL CD139887 [ CAACAAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTACGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAAT ]
[-] EMBL CD139970 [ AAGTGAACTCATCTCATCACACTGACCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACTGTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATT TATATTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAGCCTTTTTGGAAAT ]
[-] EMBL CD139917 [ TATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATTATAT TTGCCTGCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGACGTCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAAT ]
[-] EMBL CD139581 [ GGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCGTCAATAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTACGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACCTTTTTGGAAATACGGAATGATGAAAAGATGAT T ]
[+] EMBL CD163971 [ ATTTCGTTTATTTACGAAATTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCCTTAACC TTTTGGAAATACGGAAAGATG AAAGTTGTTGGTTATGTTTTTCATTTTTATTAGCGCTAAACCCGACAGATGTGACTTCTTCTCGGAGATTTGTCTT]
consensusID : consensus_10362#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[ATTTCTTCAAGTAGATATCATATCGNNGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACGCAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAA]
[-] EMBL CD200653 [ATTTCTTCAAGTAGATATCATATCGNNGTAGTATCCATTGCCAAAGAATCTAAACGAGTATGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTTAGAAAGATTTGGACAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCATTTTCAGCTAACGCAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCTTGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGATAAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTTTCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTCAAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGATTCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCATTGTCATCGTCATTAGTCCACAATGTATTCCAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10362#0 CATCGTCTTCACCATTATTATCATCATTTTCCATTTCATCCAGATTTAAATTAGTCCATA 60
consensus_10362#1 -----------------------------------------------------------A 1
*
consensus_10362#0 TTTCTTCAAGTAGATTATCAT-TATCGGTAGTATCCATTGCCAAAGAATCTAAACGAGTA 119
consensus_10362#1 TTTCTTCAAGTAGAT-ATCATATCGNNGTAGTATCCATTGCCAAAGAATCTAAACGAGTA 60
*************** ***** * *********************************
consensus_10362#0 TGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCTAAATGAAGTAATGCA 179
consensus_10362#1 TGCAATTGATTACTGGCTTGTTCACTAACTAATTCCAGTGATTCT--------------- 105
*********************************************
consensus_10362#0 CGAGAACATTCTAGTTGATACGTGAAATCACCGCATTTTTGTTTGTTAGATTTATGATTA 239
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 TTTGATTCGGTAGATGTATGCAGTTCATAAGCTTCACGTAGCAACTTAGAAAGATTTGGA 299
consensus_10362#1 ----------------------------------------------TAGAAAGATTTGGA 119
**************
consensus_10362#0 CAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCA 359
consensus_10362#1 CAATTATTAATAGAGTTTGGTGGACGTAGGAACTTTCTGGTATAGTTGAAACCAGGATCA 179
************************************************************
consensus_10362#0 TTTTCAGCTAACACAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCT 419
consensus_10362#1 TTTTCAGCTAACGCAGACATCGTTTTACGTCCGATTAATTCCAGAACATCGACACCTCCT 239
************ ***********************************************
consensus_10362#0 TGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGAT 479
consensus_10362#1 TGTACCAAATTTAAACTAGTTGCTTGTAATGAAGAGGTCAATTGTTGGCCAAATGAAGAT 299
************************************************************
consensus_10362#0 AAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTT 539
consensus_10362#1 AAACCACTCCAACCCCATGAAAAATTATTGCTACTTGTCTTTTGTTCTACATCGCGCTTT 359
************************************************************
consensus_10362#0 TCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTC 599
consensus_10362#1 TCTATGCCTGATGAAATCTGGCTACCACATGTGGAATTGTCAGTTGACTCAAGACTCTTC 419
************************************************************
consensus_10362#0 AAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGAT 659
consensus_10362#1 AAATTTTTAAACAATGAGCAGTTTATGTTGCTTGACTGTGATTCTGATATATCACCTGAT 479
************************************************************
consensus_10362#0 TCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCA 719
consensus_10362#1 TCCTCGAGAAAGTCTACTTCCCAGCCATCACTCAGTTCATTGTCGTTACCTTCCTCTCCA 539
************************************************************
consensus_10362#0 TTGTCATCGTCATTAGTCCACAATGTATTCCAAACACTGTTCCATGTATCTAATATTACT 779
consensus_10362#1 TTGTCATCGTCATTAGTCCACAATGTATTCCAAA-------------------------- 573
**********************************
consensus_10362#0 TTCCTTTCACTTTTCTCTTCAGATTGTCTTTCAACTCCCCGTTTTAGTACCTCGTCATCT 839
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 GAAGGATTTCCTTGTATTACACCCCCTGGCACAACAAGTGAACTCATCTCATCACACTGA 899
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 CCACGTAGGATGTTTGAAGTAGCTGAAGTTATGAAATCTACTTCTGTTGAAGAGTCAACT 959
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 GTCGAAAGTCTATCTATCTCAGAGCGAAGTTGAAATGATGTGATGGGATTTATATTGCCT 1019
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 GCTATTACAGGGAGTTGTTCAGTCATGAATTCGCTCACTTTGGAATCTCTATTAGTGTCG 1079
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 TCATTAATAGCTTGTTCCTCATTATTACTGACCGGAAAATCATTTCGTTTATTTACGAAA 1139
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 TTCTCGCCTTCTTTTGAACCTACTCTTTCCATTTTAGATTTTACACATTTTACTGGTGCC 1199
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 TTAACCTTTTTGGAAATACGGAATGATGAAAAGATGATTTTATGTTTTTCATTTTTATTA 1259
consensus_10362#1 ------------------------------------------------------------
consensus_10362#0 GCGCTAAACCCGACAGATGTGACTTCTTCTCGGAGATTTGTCTT 1303
consensus_10362#1 --------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||