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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 886 fasta sequence
[CTGGTACGAGGACGATACCGTTTATGTTCTGAACCTGCAGACATCTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTTAGAATGTTTAAAGAAGCAATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC-TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT-CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTTATTGTT-AATCTGTTGATTTAATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTAAACTGATCGACAACGGTATTAAATTTTTGAATCCTGAAACGAT-AT-CCTGTCTC-TCATA-TAACTNG-NATGGCTACACCA-TGAT-TGTCTG-ATCG-TGACGT-AGAAGATAATT]
[+] EMBL CD082155 [CTGGTACGAGGACGATACCGTTTATGTTCTGAACCTGCAGACATCTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTTAGAATGTTTAAAGAAGCAATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTNTCGTTGGTATTTATTGGT AATCTGGTGATTTAATCTTTGTAAAAAATA TTAGAA TTTATTGCTACCACT AACTGATCGACAAC GTATTAAATNNNTGAAT CTGAAACGAT AT CCTGTCTC TCATA TAACTNG NATGGCTACACCA TGAT TGTCTG ATCG TGACGT AGAAGAT ]
[+] EMBL CD137049 [ cccttcaTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTTAGAATGTTTAAAGAAGCAATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAG AATAATAATACTATTATTGAATATCAACGGGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACA ]
[+] EMBL CD141383 [ AATGAAATCGGCTCCTGACCAAGTCATACGATTTCATAGAGGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGCAGTGCTGAACGCGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGCGAACTTCCTAGCAGAAATAATAATACTATTATTGAATATCAACGTGAAA ]
[-] EMBL CD075771 [ TTCGAATTTCAGGTTACTCCTCAAATATTGTGTTAC TTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTTATTGTT AATCTGTTGATTTAATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTAAACTGATCGACAACGGTATTAAATTTTTGAATCCTGAAACGATAATCCCTGTCTCTTCATATTAACTTGTAATGTCTACACCATTGATATGTCTGTATCGATGACGTAAGAAGATAATT]
[-] EMBL CD141408 [ ggTACTCCTCAAATATTGTG TACTTTAAAATTGGATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTNTACGTTTTTACTTGTTCTAATTCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAACATCAACGTGAAATTGTCATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACAT ]
[-] EMBL CD133844 [ TTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCTTGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACATAAAGTT CTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTTATTGTT AATCTGTTGATTTA ]
[-] EMBL SMT14651 [ ATAGAATTGTGTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAACGTAAAGTTCCTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTCCGTTGTTATTTATTGTTAAATCTGTTGATTT ATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTAAACTGATCGACAACGGTATTAAATTTTTGAATtt ]
consensusID : consensus_10363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 330 fasta sequence
[ACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAA-GAAAATAGTTTCTTACTTCCT-GAATACCGTTTATGTTCTGAACCTGCAGACAACTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTG]
[-] EMBL CD189232 [ACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAA GAAAATAGTTTCTTACTTCCT GAATACCGTTTATGTTCTGAACCTGCAGACAACTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGATCCTGAAGTTGAAGCGCTTG]
[+] EMBL SM6681 [ AATATGTGGATGNAAAGNAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAAGGAAAATAGTTTCTTACTTCCTGGAATACCGTTTATGTTCTGAACCTGCAGACAACTTTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCANATGATCCTGANGTTGAAGCGCTT ]
consensusID : consensus_10363#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 258 fasta sequence
[CCTGAGAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAGAGAAATCCATTGGACCAACGGGGG]
[-] EMBL CD063401 [CCTGAGAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTTTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCA ]
[+] EMBL CD063451 [ GAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAAACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATG ]
[+] EMBL CD063508 [ GAACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAA ]
[-] EMBL CD063546 [ AACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCATGTTATTATTCGAGAGAAATCCATTGGACCAACGGGGG]
[-] EMBL CD063383 [ AACGAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTCA ]
[+] EMBL CD063378 [ gatattAATTTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGTCTGGTAAATATTCATCTATCTGCCCAATATGTGGATGCAAAGCAGACAAAACTTGTTCAAAGTGTAAAACCACTTCTTATTGTTCTAAAATGCACCAGGTTCTAGACTGGAAACGACACAAGTTAGAATGTGGTTCAAAGTGTCAAGATGTC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 CTGGTACGAGGACGATACCGTTTATGTTCTGAACCTGCAGACATCTTTTCGAATGATGAA 60
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 AGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGGGACTTCCAAATGAT 120
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ----------------------------------------------------CCTGAGAA 8
consensus_10363#0 CCTGAAGTTGAAGCGCTTGAATCTATAGCCAAGAAAGAGACTAAAGAAGAAGCCAGATTT 180
consensus_10363#1 ---------------------------------------------ACTCTATTCCATGGT 15
consensus_10363#2 CGAAT-TTCCCAGTCGCGAAATGTTAAACTCGATGATAAAGGCTAACTCTATTCCATGGT 67
consensus_10363#0 AGAATGTTTAAAGAAGCAATGAAATCGGCTCC-TGACCAAGTC--ATACGATTTCATAGA 237
* * *** *** *
consensus_10363#1 C-TGGTAAAT--ATTCATCTATCTGCCCAATATGTGGATGC-AAAGCAGACAAAACTTGT 71
consensus_10363#2 C-TGGTAAAT--ATTCATCTATCTGCCCAATATGTGGATGC-AAAGCAGACAAAACTTGT 123
consensus_10363#0 GGTGGTAAACCCATTTGGCTAAGTGACAATCCTGTAGAAGTTGAAAAATGTGAAGTTTGC 297
******* *** *** ** * * *** ** * ** * ** ***
consensus_10363#1 -----TCAAAGTGTAAAACCACTTCTTATTGTTC-TAAAATGCACCAG-GTTCTAGACTG 124
consensus_10363#2 -----TCAAAGTGTAAAACCACTTCTTATTGTTC-TAAAATGCACCAG-GTTCTAGACTG 176
consensus_10363#0 AGTGCTGAACGTGTTTTCGAATTTCAGGTTACTCCTCAAATATTGTGTTACTTAAAATTG 357
* ** **** * *** ** ** * **** * * * **
consensus_10363#1 GAAACGAC--ACAAGTTAGAATGTGGTTCAAA---GTGTCAAGATGTCA--TGTTATTAT 177
consensus_10363#2 GAAACGAC--ACAAGTTAGAATGTGGTTCAAA---GTGTCAAGATGTCA--TGTTATTAT 229
consensus_10363#0 GATAAAGTTGGTGAATTAAATCCAGATTTCGGTTCGCTTTACGTTTTTACTTGTTCTAAT 417
** * * *** * * ** * * * * * * * **** * **
consensus_10363#1 TCGAAGAAAATAGTTTCTTACTTCCTGAATACCGTTTATGTTCTGAACCTGCAGACAACT 237
consensus_10363#2 TCGAGAGAAATCCATTGGACCAACGGGGG------------------------------- 258
consensus_10363#0 TCATGTGAACTTCCTAGAAGAAATAATAATACTATTATTGAATATCAACGTGAAATTGTC 477
** ** * *
consensus_10363#1 TTTCGAATGATGAAAGCACTTCGGAAGAGGTAGAAAGTGACACTGAAACTGTAGACCTGG 297
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 ATTCGTCAAATGGTCCCCTAAACGATTAACAATTATTCTTATGTGAAGGTTCAGAGGGCT 537
consensus_10363#1 GACTTCCAAATGATCCTGAAGTTGAAGCGCTTG--------------------------- 330
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 TGACTTTAAAATAAAATTTGATCCGAGTACAGCTTTGATCAGATATTGATATAGAATTGT 597
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 GTAAATCAGTACCACTTTAATTCTTTACTTTACTTTACAACTATCAGTTATTATAAAAAC 657
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 ATAAAGTTCTCCCTCACTATTCTGTTAAACGTTGAAACGCATCTGTTTTCGTTGTTATTT 717
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 ATTGTTAATCTGTTGATTTAATCTTTGTAAAAAATATTTAGAATTTTATTGCTACCACTA 777
consensus_10363#1 ------------------------------------------------------------
consensus_10363#2 ------------------------------------------------------------
consensus_10363#0 AACTGATCGACAACGGTATTAAATTTTTGAATCCTGAAACGATATCCTGTCTCTCATATA 837
consensus_10363#1 -------------------------------------------------
consensus_10363#2 -------------------------------------------------
consensus_10363#0 ACTNGNATGGCTACACCATGATTGTCTGATCGTGACGTAGAAGATAATT 886
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||