cluster # 10376

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Schistosoma mansoni
cluster # 10376 cluster # 10376 Sequences # 15 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10376#0 length = 919 sequences # 10
consensus_10376#1 length = 602 sequences # 1

consensus_10376#2 length = 442 sequences # 1
consensus_10376#3 length = 358 sequences # 1
consensus_10376#4 length = 286 sequences # 2

consensusID : consensus_10376#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 919
fasta sequence

                              [GGACTTTTCGTATTTCTATTACGAGATTCCTGTATTACGTCTGTCTTCGTAGGCCGAACGAAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGTAAATCTGATGTTGGACGAAGTGCATGCGATATAATCAAGGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAG-AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGTTCATCAATCACCTAAT-CCGGGTCCTTCTATG-CCGTGTTCATTAATTCATCCAGTCTATGGAGAATT-ATATGGGATGTAGAT-AAGATGCTGCTAGTTTATTGAATACATAATTCCACTGTATTGTTGT--ATATATTTTATGCATG-GGACTCTCAT-ATCCTTGAA-TACA-TATTTGAATAAAACGCGGAACAATT]

[+] EMBL CD082193             [GGACTTTTCGTATTTCTATTACGAGATTCCTGTATTACGTCTGTCTTCGTAGGCCGAACGAAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGTAAATCTGATGTTGGACGAAGTGCATGCGATATAATCAAGGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAG AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTCTGACAGTCCANAACCACCACCACANAGGGTTACTNTGACTGTGCCTGNTATTAAT AAGCAGCANAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGTTCATCAATCACCTAATNNCGGNTCCTTCTATGCCCGTGNTCATTAATNCATNCAGTCTATGGAGAATT ATATGGGATGTAGAT AAGATGCTGCTAGTTAATTG ATACATAATNNCACTGNATTGGTGT  ATATATTTTATGCATG GGACTC CAT ATCCTTGAA TACA TATTTG                   ]
[+] EMBL AW017276             [                        GATTCCTGTATAACGTCTGTCTTCGTAGGGCGAACGAAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGTAAATCTGATGTTGGACGAAGTGCATGTGATATAATCAAGGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAG AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATT                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD081891             [                                                                                          tgtcttcGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGTAAATCTGATGTTGGACGAATTGCATGCGATATAATCAAGGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTTCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTACTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAG AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGGTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATCTCGTGGTAGCACCAATTTCTGACAGTCCAAAACCACCACCACATAGGGTTACTATGACTGTGCCTGTAATTAATAAAGCAGCAAAAGCTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAGAGTCTGTTCATCAATCACCTGAT CCGGGTCCATCTATG CCGTGANCATGAA TCATCCAGTCTATGGAGAATA ATAT GGATCGANAT CAAATGCTGCTAGGTTATTGAATACATAAT  CACTGGATCGCTGT  ATATA TTTATGCATG CGTCTCTCAT AATC TGAA TACA TACTTG                   ]
[+] EMBL AA559806             [                                                                                                    ATATTCCATCTAAAATGAAACTGGATATCAAAGACAGTAAATCTGATGTTGGACGAAGTGCATGTGATATAATCAAGGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATATTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATNTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAGAAACTACTCTATTCTAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CD096934             [                                                                                                                                                                                                                                                                                                                                                     ttgatccTCAAATCATCATGCCTACCAAG AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAac                                                                                                                                                                                                                                 ]
[-] EMBL CD075806             [                                                                                                                                                                                                                                                                                                                                                              AAATCATCATGCCTACCAAG AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTTTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGTTCATCAATCACCTAAT CCGGGTCCTTCTATG CCGTGTTCATTAATTCATCCAGTCTATGGAGAATTAATATGGATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTGTATTGTTGTTAATATATTTTATGCATGTGTACTCTCATAATCTTTGAATTACATTATTTGAAT                ]
[-] EMBL CD096828             [                                                                                                                                                                                                                                                                                                                                                                       TGCCTACCAAG AACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCGTACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGC AAAGTTGTGTT                                                                                                                                                                                                                                                   ]
[-] EMBL CD072981             [                                                                                                                                                                                                                                                                                                                                                                                                                                  caatATAAATCATGTTTAGTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTTTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGTTCATCAATCACCTAAT CCGGGTCCTTCTATG CCGTGTTCATTAATTCATCCAGTCTATGGAGAATTAATATGGATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTGTATTGTTGTTAATATATTTTATGCATGTGTACTCTCATAATCTTTGAATTACATTATTTGAATAAAACGCGGAACAATT]
[+] EMBL CD093297             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGTTCAT                                                                                                                                                                                                     ]
[-] EMBL CD117412             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAATTTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGT                                                                                                                                                                                                         ]




>consensus_10376#0
GGACTTTTCGTATTTCTATTACGAGATTCCTGTATTACGTCTGTCTTCGTAGGCCGAACG
AAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAA
CTGGATATCAAAGACAGTAAATCTGATGTTGGACGAAGTGCATGCGATATAATCAAGGCT
ATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGT
ATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTT
CATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCAT
GCCTACCAAGAACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTT
AATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTC
TTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGAC
GGTCATACATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTA
GCACCAATTTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTA
ATTAATAAAGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTA
AAGTCTGTTCATCAATCACCTAATCCGGGTCCTTCTATGCCGTGTTCATTAATTCATCCA
GTCTATGGAGAATTATATGGGATGTAGATAAGATGCTGCTAGTTTATTGAATACATAATT
CCACTGTATTGTTGTATATATTTTATGCATGGGACTCTCATATCCTTGAATACATATTTG
AATAAAACGCGGAACAATT

consensusID : consensus_10376#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CGTTTTCGTATTTCTATTACGAGATTCCTGTATAACGTCTGTCTTCGTAGGGCGAACGAAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAGAACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATGTAGAGTGTTTTTAATCACAATATAAATCATGTTTAGTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGNTCCCTAATCACANATTGCTCTATTATGAAGATTTCGTGGTAGCACCAAT]

[+] EMBL CD078512             [CGTTTTCGTATTTCTATTACGAGATTCCTGTATAACGTCTGTCTTCGTAGGGCGAACGAAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAGAACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATGTAGAGTGTTTTTAATCACAATATAAATCATGTTTAGTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGNTCCCTAATCACANATTGCTCTATTATGAAGATTTCGTGGTAGCACCAAT]




>consensus_10376#1
CGTTTTCGTATTTCTATTACGAGATTCCTGTATAACGTCTGTCTTCGTAGGGCGAACGAA
ACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAACT
GGATATCAAAGACAGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCG
GTTTATCTGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAA
TCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTA
AAGATTCAAATCATCATGCCTACCAAGAACTACTCTATTCTAAAATTAACATTCCACCTT
CAAATATTCATACTGTTAATACAGCATTATCATGTAGAGTGTTTTTAATCACAATATAAA
TCATGTTTAGTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGA
ACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCAT
ACATGCTCCTTGNTCCCTAATCACANATTGCTCTATTATGAAGATTTCGTGGTAGCACCA
AT

consensusID : consensus_10376#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [TATAATCAAGGCTATCCTTNTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTAATTTAATCCTTTAGTTAACTTCCTTNTACCAAGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAGAACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAA]

[-] EMBL CD136933             [TATAATCAAGGCTATCCTTNTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTAATTTAATCCTTTAGTTAACTTCCTTNTACCAAGGTGGGAGTATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAGAACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATTATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGCTAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATGCTCCTTGTTCCCTAATCACAAA]




>consensus_10376#2
TATAATCAAGGCTATCCTTNTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTT
ATCTGGTAATTTAATCCTTTAGTTAACTTCCTTNTACCAAGGTGGGAGTATGCCTCATCT
CCTTGCACCATATCTTTGCTCTTTCTCGGAAATCAATTGGGAACTAGTTCATTTTTTTTA
TTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCATCATGCCTACCAAGA
ACTACTCTATTCTAAAATTAACATTCCACCTTCAAATATTCATACTGTTAATACAGCATT
ATCATTAGAAGATTCAGCAGATGATTATCAGAAACAGCTCTTATCATTCTTTGGAACAGC
TAACGGTTATCCACGTTTCGACCTACTGCTTCTTGGTATGGGTCCAGACGGTCATACATG
CTCCTTGTTCCCTAATCACAAA

consensusID : consensus_10376#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 358
fasta sequence

                              [GTATAGGTTCAACGTCTATGACTATCTGACTTTAAAAGTTACTTCATATCAAGGCAGCATGGTGAAGTGTTTGCCTACATAGCTGCAATAACAAACAATGAATAGGTATGAAAACAAGTTATTTCAAGTTTGTGAAAGAAGAGCACCTCCAGTGATGTATACTATCTAATGTTTCAAACGTCCCAATACGCGTCACTCGACGTGGTTATTTGTATAGCTCATCTTTGAACTTCAAATGTTTACCATTTTCCTGATAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAG]

[+] EMBL CD138781             [GTATAGGTTCAACGTCTATGACTATCTGACTTTAAAAGTTACTTCATATCAAGGCAGCATGGTGAAGTGTTTGCCTACATAGCTGCAATAACAAACAATGAATAGGTATGAAAACAAGTTATTTCAAGTTTGTGAAAGAAGAGCACCTCCAGTGATGTATACTATCTAATGTTTCAAACGTCCCAATACGCGTCACTCGACGTGGTTATTTGTATAGCTCATCTTTGAACTTCAAATGTTTACCATTTTCCTGATAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAG]




>consensus_10376#3
GTATAGGTTCAACGTCTATGACTATCTGACTTTAAAAGTTACTTCATATCAAGGCAGCAT
GGTGAAGTGTTTGCCTACATAGCTGCAATAACAAACAATGAATAGGTATGAAAACAAGTT
ATTTCAAGTTTGTGAAAGAAGAGCACCTCCAGTGATGTATACTATCTAATGTTTCAAACG
TCCCAATACGCGTCACTCGACGTGGTTATTTGTATAGCTCATCTTTGAACTTCAAATGTT
TACCATTTTCCTGATAGGTGATATTCCATCTAAAATGAAACTGGATATCAAAGACAGCTA
TCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCTGGTGGGAG

consensusID : consensus_10376#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 286
fasta sequence

                              [TCATCAATCACCTAATCCGTTTCCTTCTATGCCGTGTTCATTAATTCTTCCAGTTTATGGAGAATTAATATGGATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTGTATTGTTGTTAATATATTTTATGCATGTGTACTCTCATAATCTTTGAATTACATTATTTGAATAAAACGCGGAATTTTTTAAACTTCTCATCAACTACTTATATCCATATGTGTATTAAAGTGTAACATTGAGTTATGATATAGTGTAATAAATCTTTTATATCTA]

[-] EMBL AI026186             [TCATCAATCACCTAATCCGTTTCCTTCTATGCCGTGTTCATTAATTCTTCCAGTTTATGGAGAATTAATATGGATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTGTATTGTTGTTAATATATTTTATGCATGTGTACTCTCATAATCTTTGAATTACATTATTTGAATAAAACGCGGAATTTTTTAAACTTCTCATCAACTACTTATATCCATATGTGTATTAAAGTGTAACATTGAGTTATGATATAGTGTAATAAATCTTTTATATCTA]
[-] EMBL AI740405             [                  gggTCCTTCTATGCCGTGTTCATTAATTCATCCAGTCTATGGAGAATTAATATGGATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTGTATTGTTGTTAATATATTTTATGCATGTGTACTCTCATAATCTTTGAATTACATTATTTGAATAAAACGCGGAA CAATTAAACTTCTCATCAACTACTTATAACCATATGTGTATTAAAGTGTAACATTGAGTTATGATATAGTGTAATAAATCTTTTATATCTA]




>consensus_10376#4
TCATCAATCACCTAATCCGTTTCCTTCTATGCCGTGTTCATTAATTCTTCCAGTTTATGG
AGAATTAATATGGATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTG
TATTGTTGTTAATATATTTTATGCATGTGTACTCTCATAATCTTTGAATTACATTATTTG
AATAAAACGCGGAATTTTTTAAACTTCTCATCAACTACTTATATCCATATGTGTATTAAA
GTGTAACATTGAGTTATGATATAGTGTAATAAATCTTTTATATCTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10376#1      --CGTTTTCGTATTTCTATTACGAGATTCCTGTATAACGTCTGTCTTCGTAGGGCGAACG 58
consensus_10376#2      ------------------------------------------------------------
consensus_10376#0      GGACTTTTCGTATTTCTATTACGAGATTCCTGTATTACGTCTGTCTTCGTAGGCCGAACG 60
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      AAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAA 118
consensus_10376#2      -------------TATAATCAAGGCTATCCTTNTAGAGT-------CAACTAAGGATAAC 40
consensus_10376#0      AAACTAACTGGATAAAAACTAACATTCGCTTTTTTAGGTGATATTCCATCTAAAATGAAA 120
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      CTGGATATCAAAGACAGC-----------------------------------------T 137
consensus_10376#2      CGTATTGTTACAATCGGT-----------------------------------------T 59
consensus_10376#0      CTGGATATCAAAGACAGTAAATCTGATGTTGGACGAAGTGCATGCGATATAATCAAGGCT 180
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      ATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCT-GGTGGGAG 196
consensus_10376#2      TATCT------GGTAATT-----TAATCCTTTAGTTAACTTCCTTNTACCAAGGTGGGAG 108
consensus_10376#0      ATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAATCGGTTTATCT-GGTGGGAG 239
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      TATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCA--ATTGGGAACTA 254
consensus_10376#2      TATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCA--ATTGGGAACTA 166
consensus_10376#0      TATGCCTCATCTCCTTGCACCATATCTTTGCTCTTTCTCGGAAATCA--ATTGGGAACTA 297
consensus_10376#4      --------------------------------------------TCA--TCAATCACCTA 14
consensus_10376#3      -------------------GTATAGGTTCAACGTCTATGACTATCTGACTTTAAAAGTTA 41
                                                                              *  **

consensus_10376#1      GTTCATTTTTTT-TATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCA 313
consensus_10376#2      GTTCATTTTTTT-TATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCA 225
consensus_10376#0      GTTCATTTTTTT-TATTGTGATGAGAGACTAGTTCCATTAGATAGTAAAGATTCAAATCA 356
consensus_10376#4      ATCCGTTTCCTT-CTATGCCGTGTTC-ATTAATTCTTCCAGTTTATGGAGAATTAATATG 72
consensus_10376#3      CTTCATATCAAGGCAGCATGGTGAAGTGTTTGCCTACATAGCTGCAATAACAAACAATGA 101
                        * * * *             **      *         ** *     *      *    

consensus_10376#1      TCATGCCTACCAAGA-ACTACTCTATTCTAAAATTAACATTCCACCTTCA--AATATTCA 370
consensus_10376#2      TCATGCCTACCAAGA-ACTACTCTATTCTAAAATTAACATTCCACCTTCA--AATATTCA 282
consensus_10376#0      TCATGCCTACCAAGA-ACTACTCTATTCTAAAATTAACATTCCACCTTCA--AATATTCA 413
consensus_10376#4      GATTGTAGATAAAGATGCTGCTAGTTTATTGAATACATAAATCAACTGTATTGTTGTTAA 132
consensus_10376#3      ATAGGTATGAAAACAAGTTATTTCAAGTTTGTGAAAGAAGAGCACCTCCAGTGATGTATA 161
                           *      ** *   *  *      *         *   ** **  *    * *  *

consensus_10376#1      TACTGTTAATACA---GCATTATCATGTAGAGTGTTTTTAATCACAATATAAATCATGTT 427
consensus_10376#2      TACTGTTAATACA---GCATTATCAT---------------------------------- 305
consensus_10376#0      TACTGTTAATACA---GCATTATCAT---------------------------------- 436
consensus_10376#4      TATATTTTATGCATGTGTACTCTCATAATC------------------------------ 162
consensus_10376#3      C-TATCTAATGTTTCAAACGTCCCAATACGCGTCACTCGACGTGGTTATTTGTATAGCTC 220
                             * **          *  **                                   

consensus_10376#1      TAGTAGAAGATTCAGCAGATGATTATCA-GAAACAGCTCTTATCATTCTTTGGAACAGCT 486
consensus_10376#2      ---TAGAAGATTCAGCAGATGATTATCA-GAAACAGCTCTTATCATTCTTTGGAACAGCT 361
consensus_10376#0      ---TAGAAGATTCAGCAGATGATTATCA-GAAACAGCTCTTATCATTCTTTGGAACAGCT 492
consensus_10376#4      ---TTTGAATTACATTATTTGAATAAAACGCGGAATTTTTTAAACTTCTCATCAACTACT 219
consensus_10376#3      ATCTTTGAACTTCAAATGTTTACCATTT-TCCTGATAGGTGATATTCCATCTAAAATGAA 279
                          *   *  * **     * *  *         *    * *   * *     **     

consensus_10376#1      AACGGTTATCCACGT--TTCGACCTACTGCTTCTTGGTATGGGT--CCAGACGGTCATAC 542
consensus_10376#2      AACGGTTATCCACGT--TTCGACCTACTGCTTCTTGGTATGGGT--CCAGACGGTCATAC 417
consensus_10376#0      AACGGTTATCCACGT--TTCGACCTACTGCTTCTTGGTATGGGT--CCAGACGGTCATAC 548
consensus_10376#4      TATATCCATATGTGT--ATTAAAGTGTAACATTGAGTTATGA-----TATAGTGTAATAA 272
consensus_10376#3      ACTGGATATCAAAGACAGCTATCCTTTTAGAGTCAACTAAGGATAACCGTATTGTTACAA 339
                              **    *          *            ** *         *  ** * * 

consensus_10376#1      ATGCTCCTTGNTCCCTAATCACANATTGCTCTATTATGAAGATTTCGTGGTAGCACCAAT 602
consensus_10376#2      ATGCTCCTTGTTCCCTAATCACAAA----------------------------------- 442
consensus_10376#0      ATGCTCCTTGTTCCCTAATCACAAATTGCTCTATTATGAAGATTTCGTGGTAGCACCAAT 608
consensus_10376#4      ATCTTTTATATCTA---------------------------------------------- 286
consensus_10376#3      TCGGTTTATCTGGTGGGAG----------------------------------------- 358
                           *   *                                                   

consensus_10376#1      ------------------------------------------------------------
consensus_10376#2      ------------------------------------------------------------
consensus_10376#0      TTCTGACAGTCCAAAACCACCACCACAAAGGGTTACTTTGACTGTGCCTGTAATTAATAA 668
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      ------------------------------------------------------------
consensus_10376#2      ------------------------------------------------------------
consensus_10376#0      AGCAGCAAAAGTTGTGTTTATGGTCACAGGATCAGATAAAGCTCATGCATTAAAGTCTGT 728
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      ------------------------------------------------------------
consensus_10376#2      ------------------------------------------------------------
consensus_10376#0      TCATCAATCACCTAATCCGGGTCCTTCTATGCCGTGTTCATTAATTCATCCAGTCTATGG 788
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      ------------------------------------------------------------
consensus_10376#2      ------------------------------------------------------------
consensus_10376#0      AGAATTATATGGGATGTAGATAAGATGCTGCTAGTTTATTGAATACATAATTCCACTGTA 848
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      ------------------------------------------------------------
consensus_10376#2      ------------------------------------------------------------
consensus_10376#0      TTGTTGTATATATTTTATGCATGGGACTCTCATATCCTTGAATACATATTTGAATAAAAC 908
consensus_10376#4      ------------------------------------------------------------
consensus_10376#3      ------------------------------------------------------------
                                                                                   

consensus_10376#1      -----------
consensus_10376#2      -----------
consensus_10376#0      GCGGAACAATT 919
consensus_10376#4      -----------
consensus_10376#3      -----------