cluster # 10406

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Schistosoma mansoni
cluster # 10406 cluster # 10406 Sequences # 16 consensus # 8

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10406#0 length = 659 sequences # 2
consensus_10406#1 length = 559 sequences # 2
consensus_10406#2 length = 524 sequences # 1
consensus_10406#3 length = 490 sequences # 3

consensus_10406#4 length = 445 sequences # 2
consensus_10406#5 length = 428 sequences # 1
consensus_10406#6 length = 337 sequences # 1
consensus_10406#7 length = 335 sequences # 4

consensusID : consensus_10406#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 659
fasta sequence

                              [CATATCATTGTTGATTAGTATTTCAACTGAAATAATTAGTTCAATCGATAGAACTAGCCAATCAACTACGACTATAATCGACTATCATGGTTCTTTAACAAGCATTAGCAGCATGTAAATGCTCCTGTGTAATATGTCTGTTAAAATATCAACCTTCCGTAAGTATAGTCTCAAGGCAACACGAACGCATATCTGTTTGCAACTTATCCACTTGTATAACCAATACAGGATTAACTGTCGATTATAAATTCATCTTTCTTCTTAATCACTATCAACTAACTTCTATCAGAAATTATCTACTAGAATATTTTACTTTTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACAAACGCTAGAGATTTACGGTGAGTTTGAACCAAAAGTTTCCTGCGATGTTAGATCTTGTTTAGACTGTTTCGCCAGGTAATGCTACGTGTTTGGCTCANATTAAATTTGGACGTATATCAATTCAGTCTACAACGCTTCGTTAATCTACGAATTCAATCAACATATTTCAATTACTTTGGAGCAAGAGTAACCCAGGCTAGTTTCATAATTGCGTTCTGACTCGCAAGAAAAACTGCCTATAGGCGGCTAAATATTCAGCATCGATAGGCGGTGGGTTATTTTATT]

[+] EMBL CD154711             [CATATCATTGTTGATTAGTATTTCAACTGAAATAATTAGTTCAATCGATAGAACTAGCCAATCAACTACGACTATAATCGACTATCATGGTTCTTTAACAAGCATTAGCAGCATGTAAATGCTCCTGTGTAATATGTCTGTTAAAATATCAACCTTCCGTAAGTATAGTCTCAAGGCAACACGAACGCATATCTGTTTGCAACTTATCCACTTGTATAACCAATACAGGATTAACTGTCGATTATAAATTCATCTTTCTTCTTAATCACTATCAACTAACTTCTATCAGAAATTATCTACTAGAATATTTTACTTTTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACAAACGCTAGAGATTTACGGTGAGTTTGAACCAAAAGTTTCCTGCGATGTTAGATCTTGTTTAGACTGTTTCGCCAGGTAATGCTACGTGTTTGGCTCANATTAAATTTGGACGTATATCAATTCAGTCTACAACGCTTCGTTAATCTACGAATTCAATCAACATATTTCAATTACTTTGGAGCAAGA                                                                                                   ]
[+] EMBL CD179172             [                                                                                                                                                                                                                                                                                          CTATCAGAAATTATCTACTAGAATATTTTACTTTTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCGAATCAGAGGATACAAACGCTAGAGATTTACGGTGAGTTTGAACCAAAAGTTTCCTGCGATGTTAGATCTTGTTTAGACTGTTTCGCCAGGTAATGCTACGTGTTTGGCTCAAATTAAATTTGGACGTATATCAATTCAGTCTACAACGCTTCGTTAATCTACGAATTTAATCAACATATTTCAATTACTTTGGAGCAAGAGTAACCCAGGCTAGTTTCATAATTGCGTTCTGACTCGCAAGAAAAACTGCCTATAGGCGGCTAAATATTCAGCATCGATAGGCGGTGGGTTATTTTATT]




>consensus_10406#0
CATATCATTGTTGATTAGTATTTCAACTGAAATAATTAGTTCAATCGATAGAACTAGCCA
ATCAACTACGACTATAATCGACTATCATGGTTCTTTAACAAGCATTAGCAGCATGTAAAT
GCTCCTGTGTAATATGTCTGTTAAAATATCAACCTTCCGTAAGTATAGTCTCAAGGCAAC
ACGAACGCATATCTGTTTGCAACTTATCCACTTGTATAACCAATACAGGATTAACTGTCG
ATTATAAATTCATCTTTCTTCTTAATCACTATCAACTAACTTCTATCAGAAATTATCTAC
TAGAATATTTTACTTTTTGACCACTGCCTGCCTAATTTCCAATTGCTGAGTTCCATGGCG
AATCAGAGGATACAAACGCTAGAGATTTACGGTGAGTTTGAACCAAAAGTTTCCTGCGAT
GTTAGATCTTGTTTAGACTGTTTCGCCAGGTAATGCTACGTGTTTGGCTCANATTAAATT
TGGACGTATATCAATTCAGTCTACAACGCTTCGTTAATCTACGAATTCAATCAACATATT
TCAATTACTTTGGAGCAAGAGTAACCCAGGCTAGTTTCATAATTGCGTTCTGACTCGCAA
GAAAAACTGCCTATAGGCGGCTAAATATTCAGCATCGATAGGCGGTGGGTTATTTTATT

consensusID : consensus_10406#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 559
fasta sequence

                              [GTGGGCACTAAGACAATACCAGAGTTCTGACTAGAGCAGACAGCCTGTAAGAGCTACCAATATTCCAGAAAGCAGTTTGCATGAGTGTTTTGCGTAGTATAATTTCACCGTTTGCCAGAACTATGACAATTATGACCATCATATTGTTAGCCAATCGCTTAGAATGATATTTTAGAAGCATTTACAAATAAAAGACATAGCTAACCCTGGAAAGTCGACAACTTGAACGACCAATGATACTACGAATCATGTTGACTGCGACCTTCAGTCTTCAGTCTTCAGTAATAAGGATAAGAGGTCTAGTGACCTATTTTAATCCTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAACGTCCTCTCAAATGCTCAGCCCTAGACGGGAGGAAAAGATAGGACATGTTAGTACCAAGGTCATCGTTCAAGATT]

[+] EMBL CD164492             [GTGGGCACTAAGACAATACCAGAGTTCTGACTAGAGCAGACAGCCTGTAAGAGCTACCAATATTCCAGAAAGCAGTTTGCATGAGTGTTTTGCGTAGTATAATTTCACCGTTTGCCAGAACTATGACAATTATGACCATCATATTGTTAGCCAATCGCTTAGAATGATATTTTAGAAGCATTTACAAATAAAAGACATAGCTAACCCTGGAAAGTCGACAACTTGAACGACCAATGATACTACGAATCATGTTGACTGCGACCTTCAGTCTTCAGTCTTCAGTAATAAGGATAAGAGGTCTAGTGACCTATTTTAATCCTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAACGTCCTCTCAAATGCTCAGCCCTAGACGGGAGGAAAAGATAGGACATGTTAGTACCAAGGTCATCGTTCAAGATT]
[+] EMBL CD164340             [                aACCAGAG TCTGACTAGAGCAGACAG CTGTATGAGCTACCAATATTCCAGAAAACAGTTTGCATGAGTGTTTTGCGTAGTATAATTTCACCG TTGCCAGAACTATGACAATTATGACCATCATA TGTTAGCCAATCGCTTAGAATGATATTTTAGAAGCATTTACAAATAAAAGACATAGCTAACCCTGGAAAGTCGACAACTTGAACGACCAATGATACTACGAATCATGTTGACTGCGACCTTCAGTCTTCAGTCTTCAGTAATAAGGATAAGAGGTCTAGTGACCTATTTTAATCCTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAATATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACTCGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTTGAATGTCCTCTCAAATGCTCAGNCCTAGACGGGAGG                                          ]




>consensus_10406#1
GTGGGCACTAAGACAATACCAGAGTTCTGACTAGAGCAGACAGCCTGTAAGAGCTACCAA
TATTCCAGAAAGCAGTTTGCATGAGTGTTTTGCGTAGTATAATTTCACCGTTTGCCAGAA
CTATGACAATTATGACCATCATATTGTTAGCCAATCGCTTAGAATGATATTTTAGAAGCA
TTTACAAATAAAAGACATAGCTAACCCTGGAAAGTCGACAACTTGAACGACCAATGATAC
TACGAATCATGTTGACTGCGACCTTCAGTCTTCAGTCTTCAGTAATAAGGATAAGAGGTC
TAGTGACCTATTTTAATCCTTGCAGTTTGTTACACTGTGGAGGTCCAATCTCGTCTTGAA
TATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTAC
TCGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTT
TGAACGTCCTCTCAAATGCTCAGCCCTAGACGGGAGGAAAAGATAGGACATGTTAGTACC
AAGGTCATCGTTCAAGATT

consensusID : consensus_10406#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 524
fasta sequence

                              [AACCTAGCATAACCTTAACAAAAATAATATACGACTACACTTTTAGAATCCAGAAATACAATTGTAACATTAATAATAATAATTTCACCTTAAGTACTAAACATACTAATGCAGATTTGTATAAGCTGAAAAATTAATAGTTGTGTGAGTATGAAATTAAAAAGGTTTATCCATTCAGTATTTACTATATTGTTTAATGGAGGTTCCTACGGAAGCGATCATCCAGAAGATACAAGTGTTTATTAACAGTTGTCTACGCAAGATACTTCGGATCCGTTGGCCAGACACTATCAGCAACAACCTACTGTGGGAGACAACAAACCAGATTCCAGCGGAAGAAGAAATCAGGAAGAGGCGCTGGAAGTGGATTGTGCACACTTTGAGGAAATCACTCAACTGCGTCACATGACAAGCCCTCACATGGAATCCTGAAGGTCAAAGGAAAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGGCATGAGAAGAATGAACAAGAATTGGATAGAACTAG]

[+] EMBL CD183310             [AACCTAGCATAACCTTAACAAAAATAATATACGACTACACTTTTAGAATCCAGAAATACAATTGTAACATTAATAATAATAATTTCACCTTAAGTACTAAACATACTAATGCAGATTTGTATAAGCTGAAAAATTAATAGTTGTGTGAGTATGAAATTAAAAAGGTTTATCCATTCAGTATTTACTATATTGTTTAATGGAGGTTCCTACGGAAGCGATCATCCAGAAGATACAAGTGTTTATTAACAGTTGTCTACGCAAGATACTTCGGATCCGTTGGCCAGACACTATCAGCAACAACCTACTGTGGGAGACAACAAACCAGATTCCAGCGGAAGAAGAAATCAGGAAGAGGCGCTGGAAGTGGATTGTGCACACTTTGAGGAAATCACTCAACTGCGTCACATGACAAGCCCTCACATGGAATCCTGAAGGTCAAAGGAAAAGAGGAAGACCAAAGAACACATTACGCCGAGAAATAGAGACAGGCATGAGAAGAATGAACAAGAATTGGATAGAACTAG]




>consensus_10406#2
AACCTAGCATAACCTTAACAAAAATAATATACGACTACACTTTTAGAATCCAGAAATACA
ATTGTAACATTAATAATAATAATTTCACCTTAAGTACTAAACATACTAATGCAGATTTGT
ATAAGCTGAAAAATTAATAGTTGTGTGAGTATGAAATTAAAAAGGTTTATCCATTCAGTA
TTTACTATATTGTTTAATGGAGGTTCCTACGGAAGCGATCATCCAGAAGATACAAGTGTT
TATTAACAGTTGTCTACGCAAGATACTTCGGATCCGTTGGCCAGACACTATCAGCAACAA
CCTACTGTGGGAGACAACAAACCAGATTCCAGCGGAAGAAGAAATCAGGAAGAGGCGCTG
GAAGTGGATTGTGCACACTTTGAGGAAATCACTCAACTGCGTCACATGACAAGCCCTCAC
ATGGAATCCTGAAGGTCAAAGGAAAAGAGGAAGACCAAAGAACACATTACGCCGAGAAAT
AGAGACAGGCATGAGAAGAATGAACAAGAATTGGATAGAACTAG

consensusID : consensus_10406#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 490
fasta sequence

                              [ACAAAAATAAGCACAAAAAGATCAAATCTAAGCAAAGTCATCAGAGAAAATTGAAAGATAAAAAATCACACAATGAAGCAAATAGTATCAATTTAGGTGAAAATTTTAAAATTAGTGGGCTCAGTTATATTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATGATGAAGAATCAGAAACGTATTCCTATCCTTGTCCGTGTGGTGATCGATTTCTAATTACCAAGGAAGATTTACTGTGTGGTGATGATATAGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGATATGGAAAATATACTTCCTAACGTGAAAGAATCGTCAGCTGAAATAATGGTTTCCTAAAAATTTCTGTATTATCTTCAATAAAC]

[-] EMBL CD148871             [ACAAAAATAAGCACAAAAAGATCAAATCTAAGCAAAGTCATCAGAGAAAATTGAAAGATAAAAAATCACACAATGAAGCAAATAGTATCAATTTAGGTGAAAATTTTAAAATTAGTGGGCTCAGTTATATTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATC                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD192236             [                                                                                                                                 TTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATGATGAAGAATCAGAAACGTATTCCTATCCTTGTCCGTGTGGTGATCGATTTCTAATTACCAAGGAAGATTTACTGTGTGGTGAT                                                                                                                                      ]
[-] EMBL CD124995             [                                                                                                                                                                                                                                                                                                    TTCCTATCCTTGTCCGTGTGGTGATCGATTTTTAATTACCAAGGAAGATTTACTGTGTGCTCCTGATATAGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGATATGGAAAATATACTTCCTAACGTGAAAGAATCGTCAGCTGAAATAATGGTTTCCTAAAAATTTCTGTATTATCTTCAATAAAC]




>consensus_10406#3
ACAAAAATAAGCACAAAAAGATCAAATCTAAGCAAAGTCATCAGAGAAAATTGAAAGATA
AAAAATCACACAATGAAGCAAATAGTATCAATTTAGGTGAAAATTTTAAAATTAGTGGGC
TCAGTTATATTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGA
GAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTT
TGAATTGGAGTGTACTGACTAGACGGGAGTATGATGAAGAATCAGAAACGTATTCCTATC
CTTGTCCGTGTGGTGATCGATTTCTAATTACCAAGGAAGATTTACTGTGTGGTGATGATA
TAGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGATATGGAAAATATAC
TTCCTAACGTGAAAGAATCGTCAGCTGAAATAATGGTTTCCTAAAAATTTCTGTATTATC
TTCAATAAAC

consensusID : consensus_10406#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 445
fasta sequence

                              [AAATACTTGGGATCCGTTGGCCAGACAATATCAGGAACAAGCTACTGTGGGAGAAAACAAACCAGATTTCAGCGGAGGGAGAAATCAGGAAGAAGCGCTGGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCAAAGGAGAAGAGGAAGACCGAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACAAATAATGGNTAGAATTAGAAAAGAAAGCCGAGGACAGAGTAGGTTGTTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTTTCGTAGTTTTCCACGTCTCTGACCCATACAGTAGAACTGTCTTGACATTTGTNTTGAAAATTCTGNCC]

[-] EMBL CD072588             [AAATACTTGGGATCCGTTGGCCAGACAATATCAGGAACAAGCTACTGTGGGAGAAAACAAACCAGATTTCAGCGGAGGGAGAAATCAGGAAGAAGCGCTGGAAGTG                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AW587536             [                                                               AGATTCCAGCGGAGGAAGAAATCAGGAAGAAGCGCTGGAAGTGGATTGGGCACACTTTGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCAAAGGAGAAGAGGAAGACCGAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAATGAACAAATAATGGNTAGAATTAGAAAAGAAAGCCGAGGACAGAGTAGGTTGTTGCTGATAGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTTTCGTAGTTTTCCACGTCTCTGACCCATACAGTAGAACTGTCTTGACATTTGTNTTGAAAATTCTGNCC]




>consensus_10406#4
AAATACTTGGGATCCGTTGGCCAGACAATATCAGGAACAAGCTACTGTGGGAGAAAACAA
ACCAGATTTCAGCGGAGGGAGAAATCAGGAAGAAGCGCTGGAAGTGGATTGGGCACACTT
TGAGGAAATCACCCAATTGTGTCACAAGACAAGCCCTCACATGGAATCCTGAAGGTCAAA
GGAGAAGAGGAAGACCGAAGAACACATTACGCCGAGAAATAGAGACAGACATGAGAAGAA
TGAACAAATAATGGNTAGAATTAGAAAAGAAAGCCGAGGACAGAGTAGGTTGTTGCTGAT
AGTGTCTGGCCATCGGATCCGAAGTATCTTGCGTAGACAACTGTTAATAAACACCTGTAT
CTTCTGGATGATGGCTTTCGTAGTTTTCCACGTCTCTGACCCATACAGTAGAACTGTCTT
GACATTTGTNTTGAAAATTCTGNCC

consensusID : consensus_10406#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 428
fasta sequence

                              [AGTCCTGCTTCTAAGTTGGATGAATTTTTTATCGATCAGTAGTGGAACGATGACCAGCTGCATTAAGGTCAGGCAGAGCCAAAGTGACAGAAGTTTAGACTGGAATTTTATTGGTTAATTTGTAACAGACTCAAACCTATTCCCCCTGAACACAGGATACATATATATTTCAAAGCAAGCCTATGAGCAAATTCAGGTAAATTGAGATTGAGAGTTATGCAAGCCTATTACAACTTTGTTATCCTAACTTGAGGATATATGGATTAGTACTATGTACAGTCAGGTTTTTTTCCTCCCACAAACGTTTTTAGATATTTTCATAATTGAAATGATGAGTCAGTTGAAGCTAGACCACCATGAAAAACCTGGAAGCACTGGACGGCCGTTTTGTCCTATTATTGGACTCCTCAGCAGTGCGCATCCACGAT]

[+] EMBL CD067077             [AGTCCTGCTTCTAAGTTGGATGAATTTTTTATCGATCAGTAGTGGAACGATGACCAGCTGCATTAAGGTCAGGCAGAGCCAAAGTGACAGAAGTTTAGACTGGAATTTTATTGGTTAATTTGTAACAGACTCAAACCTATTCCCCCTGAACACAGGATACATATATATTTCAAAGCAAGCCTATGAGCAAATTCAGGTAAATTGAGATTGAGAGTTATGCAAGCCTATTACAACTTTGTTATCCTAACTTGAGGATATATGGATTAGTACTATGTACAGTCAGGTTTTTTTCCTCCCACAAACGTTTTTAGATATTTTCATAATTGAAATGATGAGTCAGTTGAAGCTAGACCACCATGAAAAACCTGGAAGCACTGGACGGCCGTTTTGTCCTATTATTGGACTCCTCAGCAGTGCGCATCCACGAT]




>consensus_10406#5
AGTCCTGCTTCTAAGTTGGATGAATTTTTTATCGATCAGTAGTGGAACGATGACCAGCTG
CATTAAGGTCAGGCAGAGCCAAAGTGACAGAAGTTTAGACTGGAATTTTATTGGTTAATT
TGTAACAGACTCAAACCTATTCCCCCTGAACACAGGATACATATATATTTCAAAGCAAGC
CTATGAGCAAATTCAGGTAAATTGAGATTGAGAGTTATGCAAGCCTATTACAACTTTGTT
ATCCTAACTTGAGGATATATGGATTAGTACTATGTACAGTCAGGTTTTTTTCCTCCCACA
AACGTTTTTAGATATTTTCATAATTGAAATGATGAGTCAGTTGAAGCTAGACCACCATGA
AAAACCTGGAAGCACTGGACGGCCGTTTTGTCCTATTATTGGACTCCTCAGCAGTGCGCA
TCCACGAT

consensusID : consensus_10406#6
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 337
fasta sequence

                              [ATTTGGCTGGTCGTGATTTAACTGATTATCTTATGAAAATATTAACTGAACGTGGTCATTCTTTTACAACTACTGCTGNNNNNNNNNNNNNNNNNNNNNNNAAGGAAAAACTGTGTTATGTTGCTTTGGACTTCGATCAAGAAATGAGTCCTGCTTCACATAGTTCATCTCTTGAGAAAAGCTATGAATTACCTGATGGTCAAGTGATTACAATTGGTACAATGTTACAACCAAGTTTCTTAGGTATGGAATGTTCCGGTATTCATGAAACAACTTACAGTTCAATTATGAAATGTGATGTTGATTTCTAAGATCTATTTNTATTCAAATATTGTTC]

[+] EMBL CD081045             [ATTTGGCTGGTCGTGATTTAACTGATTATCTTATGAAAATATTAACTGAACGTGGTCATTCTTTTACAACTACTGCTGNNNNNNNNNNNNNNNNNNNNNNNAAGGAAAAACTGTGTTATGTTGCTTTGGACTTCGATCAAGAAATGAGTCCTGCTTCACATAGTTCATCTCTTGAGAAAAGCTATGAATTACCTGATGGTCAAGTGATTACAATTGGTACAATGTTACAACCAAGTTTCTTAGGTATGGAATGTTCCGGTATTCATGAAACAACTTACAGTTCAATTATGAAATGTGATGTTGATTTCTAAGATCTATTTNTATTCAAATATTGTTC]




>consensus_10406#6
ATTTGGCTGGTCGTGATTTAACTGATTATCTTATGAAAATATTAACTGAACGTGGTCATT
CTTTTACAACTACTGCTGNNNNNNNNNNNNNNNNNNNNNNNAAGGAAAAACTGTGTTATG
TTGCTTTGGACTTCGATCAAGAAATGAGTCCTGCTTCACATAGTTCATCTCTTGAGAAAA
GCTATGAATTACCTGATGGTCAAGTGATTACAATTGGTACAATGTTACAACCAAGTTTCT
TAGGTATGGAATGTTCCGGTATTCATGAAACAACTTACAGTTCAATTATGAAATGTGATG
TTGATTTCTAAGATCTATTTNTATTCAAATATTGTTC

consensusID : consensus_10406#7
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 335
fasta sequence

                              [GGTTCATTGTAAGTCTGCCAGACTGTGTTTTCGATACAGACTTTGTATTGTAAGTGAAATTGGGACGGACCTACCTCGGTCTTGGAATTGTACAAGATCAAGTGGTCGGTTGTTTACTGGAATCAGTGATATATAGTATTCGGACCACAGATTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGT]

[+] EMBL CD200067             [GGTTCATTGTAAGTCTGCCAGACTGTGTTTTCGATACAGACTTTGTATTGTAAGTGAAATTGGGACGGACCTACCTCGGTCTTGGAATTGTACAAGATCAAGTGGTCGGTTGTTTACTGGAATCAGTGATATATAGTATTCGGACCACAGATTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGC        ]
[+] EMBL CD200078             [           AGTCTGCCAGACTGTGTTTTCGATACAGACTTTGTATTGTAAGTGAAATTGGGACGGACCTACCTCGGTCTTGGAATTGTACAAGATCAAGTGGTCGGTTGTTTACTGGAATCAGTGATATATAGTATTCGGACCACAGATTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGG                                                                             ]
[-] EMBL CD186220             [                                                          ATTGGGACGGACCTACCTCGGTCTTGGAATTGTACAAGATCAAGTGGTCGGTTGTTTACTGGAATCAGTGATATATAGTATTCGGACCACAGATTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTGGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGT]
[+] EMBL CD139198             [                                                                 CGGACCTACCTCGGTCTTGGAATTGTACAAGATCAAGTGGTCGGTTGTTTACTGGAATCAGTGATATATAGTATTCGGACCACAGATTTCAGTTTCAGTTTGGAAAGGACAGGAGGCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTTGAAGGAGTCGACGGATG                                                                              ]




>consensus_10406#7
GGTTCATTGTAAGTCTGCCAGACTGTGTTTTCGATACAGACTTTGTATTGTAAGTGAAAT
TGGGACGGACCTACCTCGGTCTTGGAATTGTACAAGATCAAGTGGTCGGTTGTTTACTGG
AATCAGTGATATATAGTATTCGGACCACAGATTTCAGTTTCAGTTTGGAAAGGACAGGAG
GCTTGATGGCCTGTGTTAGTCCTGGCAATGATGGTCTCTCAGCTGATCCAACTTTCTTTT
GAAGGAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGAT
TATTCGATGGGAAAGTCGGTAGTCAGCTGACAAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10406#2      AACCTAGCATAACCTTAACAAAAATAATATACGACTACACTTTTAGAATCCAGAAATACA 60
consensus_10406#4      ------------------------------------------------------------
consensus_10406#1      ------------------------------------------------------------
consensus_10406#7      ------------------------------------------------------------
consensus_10406#3      ------------------------------------------------------------
consensus_10406#6      ------------------------------------------------------------
consensus_10406#5      ------------------------------------------------------------
consensus_10406#0      ------------------------------------------------------------
                                                                                   

consensus_10406#2      ATTGTAACATTAATAATAATAATTTCACCTTAAGTACTAAACATACTAATGCAGATTTGT 120
consensus_10406#4      ------------------------------------------------------------
consensus_10406#1      ------------------------------------------------------------
consensus_10406#7      ------------------------------------------------------------
consensus_10406#3      ------------------------------------------------------------
consensus_10406#6      ------------------------------------------------------------
consensus_10406#5      ------------------------------------------------------------
consensus_10406#0      --------------CATATCATTGTTGATTAGTATTTCAACTGAAATAATTAGTTCAATC 46
                                                                                   

consensus_10406#2      ATAAGCTGAAAAATTAATAGTTGTGTGAGTATGAAATTAAAAAGGTTTATCCATTCAGTA 180
consensus_10406#4      ------------------------------------------------------------
consensus_10406#1      ----------------------------------------------GTGGGCACTAAGAC 14
consensus_10406#7      ------------------------------------------------------------
consensus_10406#3      ------------------------------------------------------------
consensus_10406#6      ------------------------------------------------------------
consensus_10406#5      ------------------------------------------------------------
consensus_10406#0      GATAGAACTAGCCAATCAACTACGACTATAATCGACTATCATGGTTCTTTAACAAGCATT 106
                                                                                   

consensus_10406#2      TTTACTATATTGTTTAATGGAGGTTCCTACGGAAGCGATCATCCAGAAGATACAAGTGTT 240
consensus_10406#4      ------------------------------------------------------------
consensus_10406#1      AATACCAGAGTTCTGACTAGAGCAGACAGCCTGTAAGAGCTACCAATATTCCAGAAAGCA 74
consensus_10406#7      ------------------------------------------------------------
consensus_10406#3      ---ACAAAAATAAGCACAAAAAGATCAAATCTAAGCAA--AGTCATCAGAGAAAATTGAA 55
consensus_10406#6      ------------------------------------------------------------
consensus_10406#5      ------------------------------------------------------------
consensus_10406#0      AGCAGCATGTAAATGCTCCTGTGTAATATGTCTGTTAAAATATCAACCTTCCGTAAGTAT 166
                                                                                   

consensus_10406#2      TATTAACAGTTGTCTACGCAAGATACTTCGGATCCGTTGGCCAGACACTAT--CAGCAA- 297
consensus_10406#4      --------------------AAATACTTGGGATCCGTTGGCCAGACAATAT--CAGGAA- 37
consensus_10406#1      GTTTGCATGAGTGTTTTGCGTAGTATAATTTCACCGTTTGCCAGAAC-TATGACAATTA- 132
consensus_10406#7      ---------------------GGTTCATTGTAA--GTCTGCCAGACTGTGTTTTCGATA- 36
consensus_10406#3      AGATAAAAAATCACACAATGAAGCAAATAGTATCAATTTAGGTGAAAATTTTAAAATTAG 115
consensus_10406#6      --------------------ATTTGGCTGGTCGTGATTTAACTGATTATCTTATGAAAAT 40
consensus_10406#5      -----AGTCCTGCTTCTAAGTTGGATGAATTTTTTATCGATCAG-TAGTGGAACGATGAC 54
consensus_10406#0      AGTCTCAAGGCAACACGAACGCATATCTGTTTGCAACTTATCCACTTGTATAACCAATAC 226
                                                                       *         * 

consensus_10406#2      -CAACC----TACTGTGGGAGACA-ACAAACCAGATTCCAG-CGGAAGAAGAAATCAGGA 350
consensus_10406#4      -CAAGC----TACTGTGGGAGAAA-ACAAACCAGATTTCAG-CGGAGGGAGAAATCAGGA 90
consensus_10406#1      -TGACCATCATATTGTTAGCCAATCGCTTAGAATGATATTT-TAGAAGCATTTACAAATA 190
consensus_10406#7      -CAGACTTTGTATTGTAAGTGAA--ATTGGGACGGACCTAC-CTCGGTCTTGGAATTGTA 92
consensus_10406#3      -TGGGCTCAGTTATATTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGC 174
consensus_10406#6      ATTAACTGAACGTGGTCATTCTTTTACAACTACTGCTGNNNNNNNNNNNNNNNNNNNNNN 100
consensus_10406#5      -CAGCTGCATTAAGGTCAGGCAGAGCCAAAGTGACAGAAGTTTAGACTGGAATTTTATTG 113
consensus_10406#0      -AGGATTAACTGTCGATTATAAAT-TCATCTTTCTTCTTAATCACTATCAACTAACTTCT 284
                                                                                   

consensus_10406#2      AGAGGCGCTGGAAG---TGGATTGTGCACACTTTGAGGAAATCACTCAACT-GCGTCACA 406
consensus_10406#4      AGAAGCGCTGGAAG---TGGATTGGGCACACTTTGAGGAAATCACCCAATT-GTGTCACA 146
consensus_10406#1      AAAGACATAGCTAACCCTGGAAAGTCGACAACTTGAACGACCAATGATACT-ACGAATCA 249
consensus_10406#7      CAAGATCAAG-------TGGTCGGTTGTTTACTGGAA---TCAGTGATAT----ATAGTA 138
consensus_10406#3      GATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGC-G---AGCG 230
consensus_10406#6      NAAGGAAAAACTGTGTTATGTTGCTTTGGACTTCGATCAAGAAATGAGTCCTGCTTCACA 160
consensus_10406#5      GTTAATTTGTAACAGACTCAAACCTATTCCCCCTGAACACAGGATACATAT-ATATTTCA 172
consensus_10406#0      ATCAGAAATTATCTACTAGAATATTTTACTTTTTGACC--ACTGCCTGCCTAATTTCCAA 342
                                                          *                        

consensus_10406#2      TGACAAGCCCTCACATGGAATCCTGAAGGTCAA---AGGAAAAGAGG--AAGACCAAAGA 461
consensus_10406#4      AGACAAGCCCTCACATGGAATCCTGAAGGTCAA---AGGAGAAGAGG--AAGACCGAAGA 201
consensus_10406#1      TG-TTGACTGCGACCTTCAGTCTTCAGTCTTCAGTAATAAGGATAAG--AGGTCTAGTGA 306
consensus_10406#7      TT-CGGACCACAGATTTCAGT-TTCAGTTTGGA-----AAGGACAGG--AGGCTTGATGG 189
consensus_10406#3      AGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATGATGA--AGAATCAGAAA 288
consensus_10406#6      TAGTTCATCTCTTGAGAAAAGCTATGAATTACCTGATGGTCAAGTGATTACAATTGGTAC 220
consensus_10406#5      AAGCAAGCCTATGAGCAAATTCAGGTAAATTGAG-ATTGAGAGTTATGCAAGCCTATTAC 231
consensus_10406#0      TTGCTGAGTTCCATGGCGAATCAGAGGATACAAACGCTAGAGATTTACGGTGAGTTTGAA 402
                                         *                                         

consensus_10406#2      AC-ACATTACGCCGAG---AAATAGAGACAGGCATGAGAAGAATGAACAAGAATTGGATA 517
consensus_10406#4      AC-ACATTACGCCGAG---AAATAGAGACAGACATGAGAAGAATGAACAAATAATGGNTA 257
consensus_10406#1      CCTATTTTAATCCTTG---CAGT-TTGTTACAC-TGTGGAGGTCCAATCTCGTCTTGAAT 361
consensus_10406#7      CCTGTGTTAGTCCTGG---CAAT-GATGGTCTC-TCAGCTGATCCAACTTTCTTTTGAAG 244
consensus_10406#3      CGTATTCCTATCCTTGTCCGTGTGGTGATCGATTTCTAATTACCAAGGAAGATTTACTGT 348
consensus_10406#6      AATGTTACAA-CCAAGTTTCTTAGGTATGGAATGTTCCGGTATTCATGAAACAACTTACA 279
consensus_10406#5      AACTTTGTTATCCTAA------CTTGAGGATATATGGATTAGTACTATGTACAGTCAGGT 285
consensus_10406#0      CCAAAAGTTTCCTGCG---ATGTTAGATCTTGTTTAGACTGTTTCGCCAGGTAATGCTAC 459
                                  *                      *                         

consensus_10406#2      GAACTAG----------------------------------------------------- 524
consensus_10406#4      GAATTAGAAAAGAAAGCCGAGGACAGAGTAGGTTGTTGCTGATAGTGTCTGGCCATCGGA 317
consensus_10406#1      ATATCAACAGAAGGTGCTGATATTACGTGTTCTGGTAGAGAATTCCAGTAATTCACTACT 421
consensus_10406#7      GAGTCGACGGATGGAGCCTCAACCACGTGCTGAGGTAATGAATTCCACTCGTTGATTATT 304
consensus_10406#3      GTGGTGATGATATAGCACGATGTCCAAGCTGTTCTCTTTACGTGCGTGTTATTTATGATA 408
consensus_10406#6      GT-TCAATTATGAAATGTGATGTT--GATTTCTAAGATCTATTTNTATTCAAATATTGTT 336
consensus_10406#5      TTTTTTCCTCCCACAAACGTTTTTAGATATTTTCATAATTGAAATGATGAGTCAGTTGAA 345
consensus_10406#0      GTGTTTG-GCTCANATTAAATTTGGACGTATATCAATTCAGTCTACAACGCTTCGTTAAT 518
                                                                                   

consensus_10406#2      ------------------------------------------------------------
consensus_10406#4      TCCGAAGTATCTTGCGTAGACAACTGTTAATAAACACCTGTATCTTCTGGATGATGGCTT 377
consensus_10406#1      CGGTGCGAGAAACGAAACTCCAGACGTAGACGATTTGATCTCGGTTTTTGGACTTTCTTT 481
consensus_10406#7      CGATGGGAAAGTCGGTAGTC----AGCTGACAAGT------------------------- 335
consensus_10406#3      TGGAAAATATACTTCCTAAC-----GTGAAAGAATCGTCAGCTGAAATAATGGTTTCCTA 463
consensus_10406#6      C----------------------------------------------------------- 337
consensus_10406#5      GCTAGACCACCATGAAAAACCTGGAAGCACTGGACGGCCGTTTTGTCCTATTATTGGACT 405
consensus_10406#0      CTACGAATTCAATCAACATATTTCAATTACTTTGGAGCAAGAGTAACCCAGGCTAGTTTC 578
                                                                                   

consensus_10406#2      ------------------------------------------------------------
consensus_10406#4      TCGTAGTTTTCCACGTCTCTGACCCATACAGTAGAACTGTCTTGACATTTGTNTTGAAAA 437
consensus_10406#1      GAACGTCCTCTCAAATGCTCAGCCCTAGACGGGAGGAAAAGATAGGACATGTTAGTACCA 541
consensus_10406#7      ------------------------------------------------------------
consensus_10406#3      AAAATTTCTGTATTATCTTCAATAAAC--------------------------------- 490
consensus_10406#6      ------------------------------------------------------------
consensus_10406#5      CCTCAGCAGTGCGCATCCACGAT------------------------------------- 428
consensus_10406#0      ATAATTGCGTTCTGACTCGCAAGAAAAACTGCCTATAGGCGGCTAAATATTCAGCATCGA 638
                                                                                   

consensus_10406#2      ---------------------
consensus_10406#4      TTCTGNCC------------- 445
consensus_10406#1      AGGTCATCGTTCAAGATT--- 559
consensus_10406#7      ---------------------
consensus_10406#3      ---------------------
consensus_10406#6      ---------------------
consensus_10406#5      ---------------------
consensus_10406#0      TAGGCGGTGGGTTATTTTATT 659