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Schistosoma mansoni
cluster # 10449 cluster # 10449       Sequences # 16       consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_10449#0 length = 1961 sequences # 13  
consensus_10449#1 length = 623 sequences # 1  
 consensus_10449#2 length = 522 sequences # 1  
consensus_10449#3 length = 373 sequences # 1  
consensusID : consensus_10449#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1961
fasta sequence 
                              [AGGTTGCTTTACTTTCCATAAAACATTATCAGTGGAAGACATCTTTATCAATAAGAACAACAAAAAAGAGTGGAAATCAAAGTAATGCAAATATCATAACTGATTGGGCTATTGTATTTTTTTAGCTACAATGATAAGAAAGATGCAAGCCTAAATTCGTAAAAGTAATGGTAAAAAAAGGGAAGAAATGAATAGTGTGATAAGAGAAATAATCTTTCATACATGATAAGATGCTAATGGAACAAAATCAGATACTAATGTAAGGAAAATATTTAAAAATCCAAGAGGAAATGTTTCACCAGAACAAAAATGGAACCATTCTATATATGTACTTGTTAAAAGTAAAACATAATATCCCATTAAACTAATTTCAACAATATAC------ATATATATATATATATATATATATATATATATAACTCAAATACAAAGTAGGTTTTCATAAAAACATGAAAGTACAATAAAGTGAAATAAACAGTAAAATTTGAAATTGTAGACTGTAAAAATAAACATTTCAAAATTACATAGAAGAATATGAAAACCAAAATGGTGAGAATGTCATAAATCATAAAAATAGTATGATTCATTAATTTTATTGAAATAATTTGAAGATATACTTGGTCTAATATATCCACAAGATTATCGATGAAAAGTAACCACANAATCGAAAACAAATAGTAATGGGCAGAAAAAAAGCAAAATGATTTAAGGCAGAATAATTCAAAAATTCAGTTTATGGTATACCTCCTTTTAATCTATATAGATCAAGAGATATTGCAATCATTAGGAGTTATTACTGTTTGCTTATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTAAAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGTAAGTATGCATGCATGCTCAGTCTGCATAACTTGTGTGCCTACCCTCATGTATATTGCTGCTAATAGCTACTTAGTTACTATATACTAGTTTCTATTTTTTGATTTTTGATTCCAGAAGATTTTGTATCTTCCTC-GTGGAGTCAGAACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGAAGATTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCTTCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCTCAATGAATACGCCCAAACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAAGTAACGAATGCTTCGCACATTGGCAGGAATTTGAGATCAAA-GGTATCCAGT]

[+] EMBL CD074798             [AGGTTGCTTTACTTTCCATAAAACATTATCAGTGGAAGACATCTTTATCAATAAGAACAACAAAAAAGAGTGGAAATCAAAGTAATGCAAATATCATAACTGATTGGGCTATTGTATTTTTTTAGCTACAATGATAAGAAAGATGCAAGCCTAAATTCGTAAAAGTAATGGTAAAAAAAGGGAAGAAATGAATAGTGTGATAAGAGAAATAATCTTTCATACATGATAAGATGCTAATGGAACAAAATCAGATACTAATGTAAGGAAAATATTTAAAAATCCAAGAGGAAATGTTTCACCAGAACAAAAATGGAACCATTCTATATATGTACTTGTTAAAAGTAAAACATAATATCCCATTAAACTAATTTCAACAATATAC      ATATATATATATATATATATATATATATATATAACTCAAATACAAAGTAGGTTTTCATAAAAACATGAAAGTACAATAAAGTGAAATAAACAGTAAAATTTGAAATTGTAGACTGTAAAAATAAACATTTCAAAATTACATAGAAGAATATGAAAACCAAAATGGTGAGAATGTCATAAATCATAAAAATAGTATGATTCATTAATTTTATTGAAATAATTTGAAGATATACTTGGTCTAATATATCCACAAGATTATCGATGAAAAGTAACCACANA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL SMAA14060            [                                                                                                                                                                                                                                                                                                                                                                                TTTCAACAATATACATATATATATATATATATATATATATATATATATATATAACTCAAATACAAAGTAGGTTTTCATAAAAACATGAAAGTACAATAAAGNGAAATAAACAGNAAAATTTGAAATTGTAGACTGNAAAAATAAACATTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD083501             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTCAAAATTACATAGAAGAATATGAAAACCAAAATGGTGAGAATGTCATAAATCATAAAAATAGTATGATTCATTAATTTTATTGAAATAATTTGAAGATATACTTGGTCTAATATATCCACAAGATTATCGATGAAAAGTAACCACAAAATCGAAAACAAATAGTAATGGGCAGAAAAAAAGCAAAATGATTTAAGGCAGAATAATTCAAAAATTCAGTTTATGGTATACCTCCTTTTAATCTATATAGATCAAGAGATATTGCAATCATTAGGAGTTATTACTGTTTGCTTATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTAAAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGTAAGTATGCATGCATGCTCAGTCTGCATAACTTGTGTGCCTACCCTCATGTATATTGCTGCTAATAGCTACTTAGTTACTATATACTAGTTTCTATTTTTTGATTTTTGATTCCAGAAGATTTTGTATCTTCCTC GTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD142199             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GTATATTGCTGCTAATAGCTACTTAGTTACTATATACTAGTTTCTATTTTTTGATTCTTGATTCCAGAAGATTTTGTATCTT TTCAAATGAGTCAGAACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGAAGATTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD069461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TCACTGACTTGAGTTAAGCTTGGGGAAGATTGACTTATCTCAATCTGAGCCAATTTACCAACCAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD069138             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TGAGATCATGAACAATGACTTGTCCAAATTAGTCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAGACTTAGTAACTTATTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAGAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAA GTCACAC                                                                                                                                                                                                                                                                              ]
[-] EMBL CD112881             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCTTCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCTCAATGAATACGCCCAAACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAA                                                    ]
[+] EMBL CD063914             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGAAGACGAATATCTTTGGTCG CCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTCACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCTTCGA                                                                                                                                                              ]
[+] EMBL CD131032             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCT                                                                                                                                                                  ]
[-] EMBL CD063898             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCTTCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCTCAATGAATACGCCC AACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAAGTAACGAATGCTTCGCACATTGGCAG  ATTTGAGATCAAA GGTATC    ]
[-] EMBL CD063886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGTCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCTTCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCTCAATGAATACGCCCAAACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAAGTAACGAATACTTCGCACATTGGCAGGA  TTGA                  ]
[+] EMBL CD166432             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCTTCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCTCAATGAATACGCCCAAACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAAGTAACGAATGCTTCGCACATTGGCAGGAATTTGAGATCAA            ]
[-] EMBL CD138141             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCCTCAATTAATACGCCCAAGCAAGAGCACCACATGCGTATTCATCATTTGTTGATAAAGTAACGAATGCTTCGCACATTGGCAGGAATTTGAGATCAAAGGGTAT CAGT]




>consensus_10449#0
AGGTTGCTTTACTTTCCATAAAACATTATCAGTGGAAGACATCTTTATCAATAAGAACAA
CAAAAAAGAGTGGAAATCAAAGTAATGCAAATATCATAACTGATTGGGCTATTGTATTTT
TTTAGCTACAATGATAAGAAAGATGCAAGCCTAAATTCGTAAAAGTAATGGTAAAAAAAG
GGAAGAAATGAATAGTGTGATAAGAGAAATAATCTTTCATACATGATAAGATGCTAATGG
AACAAAATCAGATACTAATGTAAGGAAAATATTTAAAAATCCAAGAGGAAATGTTTCACC
AGAACAAAAATGGAACCATTCTATATATGTACTTGTTAAAAGTAAAACATAATATCCCAT
TAAACTAATTTCAACAATATACATATATATATATATATATATATATATATATATAACTCA
AATACAAAGTAGGTTTTCATAAAAACATGAAAGTACAATAAAGTGAAATAAACAGTAAAA
TTTGAAATTGTAGACTGTAAAAATAAACATTTCAAAATTACATAGAAGAATATGAAAACC
AAAATGGTGAGAATGTCATAAATCATAAAAATAGTATGATTCATTAATTTTATTGAAATA
ATTTGAAGATATACTTGGTCTAATATATCCACAAGATTATCGATGAAAAGTAACCACANA
ATCGAAAACAAATAGTAATGGGCAGAAAAAAAGCAAAATGATTTAAGGCAGAATAATTCA
AAAATTCAGTTTATGGTATACCTCCTTTTAATCTATATAGATCAAGAGATATTGCAATCA
TTAGGAGTTATTACTGTTTGCTTATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTA
AAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGTAAGTATGCATGCATGCTCAGTCTG
CATAACTTGTGTGCCTACCCTCATGTATATTGCTGCTAATAGCTACTTAGTTACTATATA
CTAGTTTCTATTTTTTGATTTTTGATTCCAGAAGATTTTGTATCTTCCTCGTGGAGTCAG
AACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGA
CTTGAGTTAAGCTTGGGGAAGATTGACTTATCTCAATCTGAGCCAATTTACCAACAAAAT
CACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTT
GCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTAT
CCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTAC
GAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGA
ATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGAC
CTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATG
TTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGAT
CTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATACCACAG
TGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAGCTTTG
TGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTTGCTAT
CAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCATTTGCT
TCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCTCAATG
AATACGCCCAAACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAAGTAACGAATG
CTTCGCACATTGGCAGGAATTTGAGATCAAAGGTATCCAGT

consensusID : consensus_10449#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 623
fasta sequence 
                              [TTTTGATTCCAGAAGATTTGTATTCTTTTCAAATGAATCAGAACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGNNNATTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATNNNNNNNNNNNNNNNNNNNNTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCNNNNNNNNNNNNNNNNNNNNNNNNCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGC]

[-] EMBL CD080972             [TTTTGATTCCAGAAGATTTGTATTCTTTTCAAATGAATCAGAACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGNNNATTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATNNNNNNNNNNNNNNNNNNNNTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCNNNNNNNNNNNNNNNNNNNNNNNNCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTCAAACAAGTCATCAATGTTTCTTAATACCACAGTGTCAGC]




>consensus_10449#1
TTTTGATTCCAGAAGATTTGTATTCTTTTCAAATGAATCAGAACCCATATAATCCATTTG
CCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGN
NNATTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAG
TTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCC
AACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATNNNNNNNNNNNNNNNNNNN
NTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGG
TGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAAT
ATCTTTGGTCGCNNNNNNNNNNNNNNNNNNNNNNNNCAGACCTTGATCCCCCCCATCAAA
GCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGAA
GACAAAAACTCCTGAATTAAAACAGTCTGGCCAACCTGGATCTCAAACAAGTCATCAATG
TTTCTTAATACCACAGTGTCAGC

consensusID : consensus_10449#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence 
                              [CCTGGGCTAGGGTGGGAAATCAGGGACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGAAGTTTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGA]

[+] EMBL CD167960             [CCTGGGCTAGGGTGGGAAATCAGGGACCCATATAATCCATTTGCCCACGTTCCCATGCCAATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGAAGTTTGACTTATCTCAATCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAATTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGA]




>consensus_10449#2
CCTGGGCTAGGGTGGGAAATCAGGGACCCATATAATCCATTTGCCCACGTTCCCATGCCA
ATTGTCTTTCAGATTCATCACTGACTTGAGTTAAGCTTGGGGAAGTTTGACTTATCTCAA
TCTGAGCCAATTTACCAACAAAATCACTCTCACCAGGAGTTAGTTTTGGATGAACGTGGG
TCATAAATAAATTCCACCAGTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCAT
GAACAATGACTTGTCCAAATTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAA
AATGAACAACACGAATTTTATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGG
CTTGGCTGATGACGTTGTAAATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAAT
CAGAGAAGAAGATATTCAGCAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAG
CAAAACTTAGTAACTTGTTGTATGTTTCCAATGACGGCTTGA

consensusID : consensus_10449#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 373
fasta sequence 
                              [CTCTCAATACATCGAGAGTATATAACCACAATGTGTGAGGTCTCAAATCATACAAATAGTGTGGTCCCCTAATTTATTGCGATAATTGTAGAGATACACGGCTCAATATATCCCACAGATTTTCGGTTGAAAGTTACCCCCAAATTCGAAACAAATTGTTATTGGGCGGAAAAAAAGCAAAATGATTTAAGGCAGAATAATTCAAAAATTCAGTTTATGGTATACCTCCTTTTAATCTATATAGATCAAGAGATATTGCAATCATTAGGAGTTATTACTGTTTGCTTATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTAAAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGCTAAGTATGCATGC]

[-] EMBL AW146538             [CTCTCAATACATCGAGAGTATATAACCACAATGTGTGAGGTCTCAAATCATACAAATAGTGTGGTCCCCTAATTTATTGCGATAATTGTAGAGATACACGGCTCAATATATCCCACAGATTTTCGGTTGAAAGTTACCCCCAAATTCGAAACAAATTGTTATTGGGCGGAAAAAAAGCAAAATGATTTAAGGCAGAATAATTCAAAAATTCAGTTTATGGTATACCTCCTTTTAATCTATATAGATCAAGAGATATTGCAATCATTAGGAGTTATTACTGTTTGCTTATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTAAAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGCTAAGTATGCATGC]




>consensus_10449#3
CTCTCAATACATCGAGAGTATATAACCACAATGTGTGAGGTCTCAAATCATACAAATAGT
GTGGTCCCCTAATTTATTGCGATAATTGTAGAGATACACGGCTCAATATATCCCACAGAT
TTTCGGTTGAAAGTTACCCCCAAATTCGAAACAAATTGTTATTGGGCGGAAAAAAAGCAA
AATGATTTAAGGCAGAATAATTCAAAAATTCAGTTTATGGTATACCTCCTTTTAATCTAT
ATAGATCAAGAGATATTGCAATCATTAGGAGTTATTACTGTTTGCTTATAAGACTGATGT
GTCAAAACATATGAGCAGTAGTTAAAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGC
TAAGTATGCATGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AGGTTGCTTTACTTTCCATAAAACATTATCAGTGGAAGACATCTTTATCAATAAGAACAA 60
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      CAAAAAAGAGTGGAAATCAAAGTAATGCAAATATCATAACTGATTGGGCTATTGTATTTT 120
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      TTTAGCTACAATGATAAGAAAGATGCAAGCCTAAATTCGTAAAAGTAATGGTAAAAAAAG 180
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      GGAAGAAATGAATAGTGTGATAAGAGAAATAATCTTTCATACATGATAAGATGCTAATGG 240
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AACAAAATCAGATACTAATGTAAGGAAAATATTTAAAAATCCAAGAGGAAATGTTTCACC 300
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AGAACAAAAATGGAACCATTCTATATATGTACTTGTTAAAAGTAAAACATAATATCCCAT 360
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      TAAACTAATTTCAACAATATACATATATATATATATATATATATATATATATATAACTCA 420
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AATACAAAGTAGGTTTTCATAAAAACATGAAAGTACAATAAAGTGAAATAAACAGTAAAA 480
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      TTTGAAATTGTAGACTGTAAAAATAAACATTTCAAAATTACATAGAAGAATATGAAAACC 540
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AAAATGGTGAGAATGTCATAAATCATAAAAATAGTATGATTCATTAATTTTATTGAAATA 600
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      ATTTGAAGATATACTTGGTCTAATATATCCACAAGATTATCGATGAAAAGTAACCACANA 660
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      ATCGAAAACAAATAGTAATGGGCAGAAAAAAAGCAAAATGATTTAAGGCAGAATAATTCA 720
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AAAATTCAGTTTATGGTATACCTCCTTTTAATCTATATAGATCAAGAGATATTGCAATCA 780
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      TTAGGAGTTATTACTGTTTGCTTATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTA 840
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      AAAATTTGGGTGTTCAATGCGTAACAAAATGTTAGTAAGTATGCATGCATGCTCAGTCTG 900
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      CATAACTTGTGTGCCTACCCTCATGTATATTGCTGCTAATAGCTACTTAGTTACTATATA 960
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      -------------------TTTTGATTCCAGAAGATTTGTATTCTTTTCAAATGAATCAG 41
consensus_10449#2      -----------------------------------CCTGGGCTAGGGTGGGA--AATCAG 23
consensus_10449#0      CTAGTTTCTATTTTTTGATTTTTGATTCCAGAAGATTTTGTATCTTCCTCGTGGAGTCAG 1020
consensus_10449#3      ---------------------------------------------CTCTCAATACATCGA 15
                                                                               **  

consensus_10449#1      A-ACCCATATAATCCATTTGCCCACGTTCCCATGCCA-ATTGTCTTTCAGATTCATCACT 99
consensus_10449#2      GGACCCATATAATCCATTTGCCCACGTTCCCATGCCA-ATTGTCTTTCAGATTCATCACT 82
consensus_10449#0      A-ACCCATATAATCCATTTGCCCACGTTCCCATGCCA-ATTGTCTTTCAGATTCATCACT 1078
consensus_10449#3      G--AGTATATAACCACAATGTGTGAGGTCTCAAATCATACAAATAGTGTGGTCCCCTAAT 73
                             ****** *    **     * ** **   ** *       *  * * *   * *

consensus_10449#1      GACTTGAGTTAAGCTTGGGGNNNATTGACTTATCTCAATCTGAGCCAATTTACCAACAAA 159
consensus_10449#2      GACTTGAGTTAAGCTTGGGGAAGTTTGACTTATCTCAATCTGAGCCAATTTACCAACAAA 142
consensus_10449#0      GACTTGAGTTAAGCTTGGGGAAGATTGACTTATCTCAATCTGAGCCAATTTACCAACAAA 1138
consensus_10449#3      TTATTGCGATAATTGTAGAGATACACGGCTCAATATATCCCA--CAGATTTTCGGTTGAA 131
                          *** * ***   * * *      * ** *    *  *    *  **** *     **

consensus_10449#1      A-TCACTCTCA--CCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCA 216
consensus_10449#2      A-TCACTCTCA--CCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCA 199
consensus_10449#0      A-TCACTCTCA--CCAGGAGTTAGTTTTGGATGAACGTGGGTCATAAATAAATTCCACCA 1195
consensus_10449#3      AGTTACCCCCAAATTCGAAACAAATTGTTATTGGGCG--GAAAAAAAGCAAAATGATTTA 189
                       * * ** * **     * *   * ** *   **  **  *   * **  *** *     *

consensus_10449#1      GTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAA 276
consensus_10449#2      GTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAA 259
consensus_10449#0      GTGTTGCAAAAATTCAGGAGTTCCAACACTTGTGAGATCATGAACAATGACTTGTCCAAA 1255
consensus_10449#3      AGGCAG-AATAATTCAAAAATTC-----------AGTTTATGGT--ATACCTCCTTTTAA 235
                         *  * ** ******  * ***           ** * ***    **  **  *   **

consensus_10449#1      TTTATNNNNNNNNNNNNNNNNNNNNTTCTCTGACCCAATAAAATGAACAACACGAATTTT 336
consensus_10449#2      TTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTT 319
consensus_10449#0      TTTATCCAGTCCACAGTGCCAAGGTTTCTCTGACCCAATAAAATGAACAACACGAATTTT 1315
consensus_10449#3      TCTATATAGATCAAGAGATATTGC--------AATCATTAGGAGTTATTACTGTTTGCTT 287
                       * ***                           *  ** **  *   *  **       **

consensus_10449#1      ATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTA 396
consensus_10449#2      ATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTA 379
consensus_10449#0      ATTACGAAAATGAATAAAGGCTGGTGGGTAAGAGTAAAAGGCTTGGCTGATGACGTTGTA 1375
consensus_10449#3      ATAAGACTGATGTGTCAAAACATATGAGCAGTAGTTAAAAATTTGGGTGTTCAATGCGTA 347
                       ** *     ***  * **  *   ** * *  *** ***   **** ** * *    ***

consensus_10449#1      AATGAATGGTAAATGAAGACGAATATCTTTGGTCGCNNNNNNNNNNNNNNNNNNNNNNNN 456
consensus_10449#2      AATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAG 439
consensus_10449#0      AATGAATGGTAAATGAAGACGAATATCTTTGGTCGCCCAATCAGAGAAGAAGATATTCAG 1435
consensus_10449#3      ACAAAATGTTAGCTAAGTATGCATGC---------------------------------- 373
                       *   **** **  * *  * * **                                    

consensus_10449#1      CAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTT 516
consensus_10449#2      CAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTT 499
consensus_10449#0      CAGACCTTGATCCCCCCCATCAAAGCTTCCACGGCTAACAGCAAAACTTAGTAACTTGTT 1495
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      GTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACC 576
consensus_10449#2      GTATGTTTCCAATGACGGCTTGA------------------------------------- 522
consensus_10449#0      GTATGTTTCCAATGACGGCTTGAAGACAAAAACTCCTGAATTAAAACAGTCTGGCCAACC 1555
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      TGGATCT-------------------------CAAACAAGTCATCAATGTTTCTTAATAC 611
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      TGGATCTGGAGCAGCACTGAGTTCCTCCCGCTCAAACAAGTCATCAATGTTTCTTAATAC 1615
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      CACAGTGTCAGC------------------------------------------------ 623
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      CACAGTGTCAGCATCCATAAAAACAGCTTTTGTATACTGAGTTAACCTCCAACAATGAAG 1675
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      CTTTGTGAAGGTCACACCTAAGTCTGGTCTCGAAAGTAATGCCAAGTTCGTTTCGTCTTT 1735
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      GCTATCAAGCACATCAACGAATTTTACATGGTCAAATACAGACCCAATAATATCTAGCAT 1795
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      TTGCTTCGAAACCTGCTTTGTTACCAAACAGACAACCTGTCTAGTCGTCTTTACTTCCCT 1855
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ------------------------------------------------------------
consensus_10449#2      ------------------------------------------------------------
consensus_10449#0      CAATGAATACGCCCAAACAAGAGCACCACATGCGTATTCATCATTTGTTGCTAAAGTAAC 1915
consensus_10449#3      ------------------------------------------------------------
                                                                                   

consensus_10449#1      ----------------------------------------------
consensus_10449#2      ----------------------------------------------
consensus_10449#0      GAATGCTTCGCACATTGGCAGGAATTTGAGATCAAAGGTATCCAGT 1961
consensus_10449#3      ----------------------------------------------


Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)