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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10485#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 731 fasta sequence
[CCCGCGGCCTGCAGTCTTCCCGCGGCCTGCAGTCTTCCCGTTGCCTGCAGTCTTCCCGCTGCCTGGTCTTCCCGGTAGAAAAAAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC-TATTTTTTACAAAGTCATACG-AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG-GCCGTGGTGGTCATGAGC-TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA-CGTTTTTCATGCCTATTCTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCATTCACAAATAAAGT]
[-] EMBL CD180427 [CCCGCGGCCTGCAGTCTTCCCGCGGCCTGCAGTCTTCCCGTTGCCTGCAGTCTTCCCGCTGCCTGGTCTTCCCGGTAGAAAAANACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGaag ]
[-] EMBL CD163713 [ TCCCGGTAGAAAAAAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGA ]
[+] EMBL CD156492 [ AAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACCGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGTGTTATTGGTTTANCTGCT ]
[-] EMBL CD156431 [ AACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACCGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGTGTTATTGGTTTAGCTGCTG ]
[-] EMBL CD181036 [ GCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAA ]
[+] EMBL CD167603 [ acagaTTCATAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACCGTATTTTTTACAAAGTCATACGTAGGATGAAAGCTGTTTGTGTTATGACCGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATT ]
[+] EMBL SMSODCUZN [ GAAAGTGGTGTGGATTTTCGTCGTGTCTCCTCAACC TATTTTTTACAAAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA CGTTTTTCATGCCTATTCTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCATTCACAAATAAAGT]
[+] EMBL SMSODCT [ AAGTCATACG AGGATGAAAGCTGTTTGTGTTATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTCCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGTTCTATGGTTATACATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTGTTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA CGTTTTTCATGCCTATTCTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCATGCACAAATAAAGT]
[-] EMBL CD151781 [ TATGACTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGTTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGTCAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAGCGCCGTGGTGGTCATGAGCTTCAGCAAAGTACCTGGTAATGATGGTGGTCGTCTAGCTTGTGGCGTTGTTGGTTTAGCTGATGAGTAGAGTGGTAGATTTATGTTTTTAGCGTTTTTCATcgc ]
[+] EMBL CD181084 [ AACTGATAACGGACCTGTTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGGAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTA ]
[+] EMBL CD135146 [ TTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTGTTGGTTTAGCTGCTGAGTAGAGTG ]
[-] EMBL CD200331 [ ATGTCCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTGAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTGTT ]
[+] EMBL CD135170 [ AATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTNCATCATTGGTCGAACTATGGTTATCCATGAAAATGA ]
[+] EMBL CD199545 [ AGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTGGTCGTTTAGCTTGTGGCGTTATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTA CGTTTTTCATG ]
[-] EMBL CD180664 [ TCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGTCAAATTAATATCTTTGAACGGCTCTCATTAAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG CCCGTGGTGGTCATGAGC TCAGCAAAGTAACTGGTAATGCTGGTG ]
[-] EMBL CD162774 [ TCGTCATGTTGGTGACCTGGGTAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAG GCCGTGGTGGTCATGAGC TCAGCAAAGTAA ]
consensusID : consensus_10485#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 387 fasta sequence
[GCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTGTAAGTATTGATAATCACTGTCGTAGTTATTGTATACTATTGGTTTTAATTCAAAATTCCGTCAACATTGATGTGTTTGAAGCGATTACGATTTCCCTAGTCTGAGAATGGAACAAAGACTCTATGACCAAACACCAAGAAGCTAGCTAA]
[+] EMBL CD200514 [GCTGGTAAACATGGCTTTCATGTTCATGAATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAACAAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGGCGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCTCTCATTCAATCATTGGTCGAACTATGGTTGTAAGTATTGATAATCACTGTCGTAGTTATTGTATACTATTGGTTTTAATTCAAAATTCCGTCAACATTGATGTGTTTGAAGCGATTACGATTTCCCTAGTCTGAGAATGGAACAAAGACTCTATGACCAAACACCAAGAAGCTAGCTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10485#0 CCCGCGGCCTGCAGTCTTCCCGCGGCCTGCAGTCTTCCCGTTGCCTGCAGTCTTCCCGCT 60
consensus_10485#1 ------------------------------------------------------------
consensus_10485#0 GCCTGGTCTTCCCGGTAGAAAAAAACGCGGTTGTTTCTGAAAGTGGTGTGGATTTTCGTC 120
consensus_10485#1 ------------------------------------------------------------
consensus_10485#0 GTGTCTCCTCAACCTATTTTTTACAAAGTCATACGAGGATGAAAGCTGTTTGTGTTATGA 180
consensus_10485#1 ------------------------------------------------------------
consensus_10485#0 CTGGTACAGCTGGCGTAAAAGGTGTTGTCAAATTTACTCAAGAAACTGATAACGGACCTG 240
consensus_10485#1 ------------------------------------------------------------
consensus_10485#0 TTCATGTTCACGCCGAATTCAGTGGACTCAAGGCTGGTAAACATGGCTTTCATGTTCATG 300
consensus_10485#1 --------------------------------GCTGGTAAACATGGCTTTCATGTTCATG 28
****************************
consensus_10485#0 AATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAAC 360
consensus_10485#1 AATTTGGTGATACAACAAATGGATGTACTTCAGCTGGAGCTCATTTCAATCCAACTAAAC 88
************************************************************
consensus_10485#0 AAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGG 420
consensus_10485#1 AAGAACATGGAGCACCAGAAGATAGTATTCGTCATGTTGGTGACCTGGGAAATGTTGTGG 148
************************************************************
consensus_10485#0 CGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCT 480
consensus_10485#1 CGGGTGCTGATGGAAACGCAGTTTATAACGCGACTGACAAATTAATATCTTTGAACGGCT 208
************************************************************
consensus_10485#0 CTCATTCAATCATTGGTCGAACTATGGTTATCCATGAAAATGAAGATGATTTAGGCCGTG 540
consensus_10485#1 CTCATTCAATCATTGGTCGAACTATGGTTGT------AAGTATTGATAATCACTGTCGTA 262
***************************** * ** * *** ** * ***
consensus_10485#0 GTGGTCATGAGCTCAGCAAAGTAACTGGTAATGCTGGTGG--TCGTTTAGCTTGTGGCGT 598
consensus_10485#1 GTTATTGTATACTATTGGTTTTAATTCAAAATTCCGTCAACATTGATGTGTTTGAAGCGA 322
** * * ** *** * *** * * * * * * *** ***
consensus_10485#0 TATTGGTTTAGCTGCTGAGTAGAGTGGTAGATTTATGTTTTTACGTTTTTCATGCCTATT 658
consensus_10485#1 TTACGATTTCCCTAGTCTG-AGAATGGAACA---AAGACTCTATGACCAA-ACACCAAGA 377
* * *** ** * * *** *** * * * * * ** * * ** *
consensus_10485#0 CTCCCTGTGAAACAGTATGATCATTATTGTCAAAAAGGGAAGTTTTGTGTTCCAAATCAT 718
consensus_10485#1 AGCTAGCTAA-------------------------------------------------- 387
* * *
consensus_10485#0 TCACAAATAAAGT 731
consensus_10485#1 -------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||