cluster # 10494

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Schistosoma mansoni
cluster # 10494 cluster # 10494 Sequences # 17 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10494#0 length = 950 sequences # 6
consensus_10494#1 length = 876 sequences # 5

consensus_10494#2 length = 479 sequences # 5
consensus_10494#3 length = 199 sequences # 1

consensusID : consensus_10494#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 950
fasta sequence

                              [ATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGGTACGTCAAACAAACTAAGGACAATTTAGTCAAATAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAG-CAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTCGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGA-AGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAGAATANAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAATCGTGCATTTTACATTCTGGTTCTTTAATCTCATGNTGCTGATCCTAAGTCGACGCTGGTCTGGATATTTAAGAANAATAAACTGAAGTGTCGATAGTATTACACCTTTAAATCTAGACAGCATTNCGAGTGATTTGACTGTACACCTTTACTATCAACTATGTCTGGATCGCTGAGACTGCATAA]

[+] EMBL CD081286             [ATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGGTACGTCAAACAAACTAAGGACAATTTAGTCAAATAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAG CAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD079464             [                                                                                                 GGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAG CAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTTGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGA AGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAGAATANAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAATCGTGCATTTTACATTCTGGTTCTTTAATCTCATGNTGCTGATCCTAAGTCGACGCTGGTCTGGATATTTAAGAANAATAAACTGAAGTGTCGATAGTATTACACCTTTAAATCTAGACAGCATTNCGAGTGATTTGACTGTACACCTTTACTATCAACTATGTCTGGATCGCTGAGACTGCATAA]
[-] EMBL CD123493             [                                                                                                                                                                                                   TATTTATGATATTAGATCTCGACCACGGANAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTG  TCGACATGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGGCTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAG CAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTCGATGATGTCTCCATCACTGATTTGACTTTCCCGCAAGTTTACTATGCTGCTGTTGA AGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGTGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAATAAAAGCGGCTACTCGGATTGCTC                                                                                                                                                                                                               ]
[+] EMBL CD091065             [                                                                                                                                                                                                                                                                            CTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAG CAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTCGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGA AGCTAAACAGATTGCTCTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAG                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD091072             [                                                                                                                                                                                                                                                                             TCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAG CAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTCGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGA AGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGA                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD179700             [                                                                                                                                                                                                                                                                                                                                                                                       AGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCCAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTCGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGANAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTG                                                                                                                                                                                                                                                                                 ]




>consensus_10494#0
ATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGGTACGTCA
AACAAACTAAGGACAATTTAGTCAAATAGTGGATGGAGGTCATCGAGCAATTATGTTCAG
TCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTG
GTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAAC
TGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGT
GTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACC
ATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAAT
TACTCAGCGCCAGCAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGA
TTTCCACATAATTGTCGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTC
TGCTGCTGTTGAAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGT
AGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGC
TGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAGAAT
ANAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAATCGTGCATTTTACATT
CTGGTTCTTTAATCTCATGNTGCTGATCCTAAGTCGACGCTGGTCTGGATATTTAAGAAN
AATAAACTGAAGTGTCGATAGTATTACACCTTTAAATCTAGACAGCATTNCGAGTGATTT
GACTGTACACCTTTACTATCAACTATGTCTGGATCGCTGAGACTGCATAA

consensusID : consensus_10494#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 876
fasta sequence

                              [CCGAAGGCTTACACTTCAGGTATTTTGGTTGACTTAAATGAATTATATTAGAATCCCGTGGTTCCAGTACCATATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACATTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTTGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGAAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAATAAAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAAATCGTGCATTTTTACATTCTGGTTCTTTAATCCTCAATGTTGCTGATCCTAAGTTCGACGCTGGTCTGGATATTTTAAAGAAAAAATAAACTGAAGTGTCGGATAGTATTAACACCTTTAAAAATCTTAGACTAGCATTTCCGAGTGTATTTTGTACTGTTACATCCCTTAACTTAATTCAACACTATGTTTCTGTGAATCCGACTGATGTAGATGCAAATAAAATAAAAAA]

[-] EMBL CD194976             [CCGAAGGCTTACACTTCAGGTATTTTGGTTGACTTAAATGAATTATATTAGAATCCCGTGGTTCCAGTACCATATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACATTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTTGATGATGTCTCCATCACTGATTTGACTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD184961             [                                                                                                                                                                                       ACAGCTTCCACATA ATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGTTAGTGATTTCCACATAATTGTTGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGAAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAATAAAAGCGGCTACTCAGATTGCTC                                                                                                                                                                                                                                                             ]
[-] EMBL CD073736             [                                                                                                                                                                                                                                                                                                                                                     TTGTCGAAAGAGCTAGTGATTTCCACATAATTGTTGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGAAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATTTTAAGCTTCGGAAAATAAAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTTTCAAAATCGTGCATTTTTACATTCTGGTTCTTTAATCCTCAATGTTGCTGATCCTAAGTTCGACGCTGGTCTGGATATTTTAAAGAAAAAATAAACTGAAGTGTCGGATAGTATTAACCCCTTTAAAAATTTTAGACTAGCATTTCCGAGTGTATTTTGTACTGTTACATCCCTTAACTTAATTCAACACTATGTTTCTGTGAATCCGACTGATGTAGATGCAAATAAAATAAAAAA]
[-] EMBL CD075115             [                                                                                                                                                                                                                                                                                                                                                                                       TGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGAAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAATAAAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAAATCGTGCATTTTTACATTCTGGTTCTTTAATCCTCAATGTTGCTGATCCTAAGTTCGACGCTGGTCTGGATATTTTAAAGAAAAAATAAACTGAAGTGTCGGATAGTATTAACACCTTTAAAAATCTTAGACTAGCATTTCCGAGTGTATTTTGTACTGTTACATCCCTTAACTTAATTCAACACTATGTTTCTGTGAATCCGACTGATGTACATGCAAATAAAATAAAtga]
[-] EMBL AI067321             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                   CAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAATAAAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAAATCGTGCATTTTTACATTCTGGTTCTTTAATCCTCAATGTTGCTGATCCTAAGTTCGACGCTGGTCTGGATATTTTAAAGAAAAAATAAACTGAAGTGTCGGATAGTATTAACACCTTTAAAAATCTTAGACTAGCATTTCCGAGTGTATTTTGTACTGTTACATCCCTTAACTTAATTCAACACTATGTTTCTGTGAATCCGA                            ]




>consensus_10494#1
CCGAAGGCTTACACTTCAGGTATTTTGGTTGACTTAAATGAATTATATTAGAATCCCGTG
GTTCCAGTACCATATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAAC
TGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGT
GTCACAGCTTCCACATATATATCGTACATTGGGGACTGATTATGATGAACGAGTTTTACC
ATCTATAGTCAATGAAGTTCTGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAAT
TACTCAGCGCCAGCAAGTGTCTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGA
TTTCCACATAATTGTTGATGATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTC
TGCTGCTGTTGAAGCTAAACAGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGT
AGAACGTGCGAAACAAGAACGTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGC
TGCCAAACTGATTGGTGATGCCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAAT
AAAAGCGGCTACTCAGATTGCTCGAACGGTTGCTCAGTCTCAAAATCGTGCATTTTTACA
TTCTGGTTCTTTAATCCTCAATGTTGCTGATCCTAAGTTCGACGCTGGTCTGGATATTTT
AAAGAAAAAATAAACTGAAGTGTCGGATAGTATTAACACCTTTAAAAATCTTAGACTAGC
ATTTCCGAGTGTATTTTGTACTGTTACATCCCTTAACTTAATTCAACACTATGTTTCTGT
GAATCCGACTGATGTAGATGCAAATAAAATAAAAAA

consensusID : consensus_10494#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 479
fasta sequence

                              [GGTACGCATGCGTTTAAAATGAGCAATCTAAAGAATATCGCGAATTTCGGTGTCATAGGTGGAGGTTTCATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGTCTTTGTT]

[-] EMBL CD063672             [GGTACGCATGCGTTTAAAATGAGCAATCTAAAGAATATCGCGAATTTCGGTGTCATAGGTGGAGGTTTCATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATGTATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAnag                                                                     ]
[-] EMBL CD162822             [GGTACGCATGCGTTTAAAATGAACAATCTAAAGAATATCGCGAATTTCGGTGTCATAGGTGGAGGTTTCATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATA                                                                                                                                ]
[-] EMBL CD189879             [                              AAGAATATCGCGAATTTCGGTGTCATAGGTGGAGGTTTCATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAAT                           ]
[+] EMBL CD194724             [                                                                                        TTACTTTAGGCTTATCTCAATCATTTTATACAGTGGATGGAGGTCATCGAGCAATTATGTTCAATCGTATTGATGGCGTGCATAATGAAATATATACCGAAGGCTTACACTTCATAATCCCGTGGTTCCAATACCCTATTATTTATGATATTAGATCTCCACCACAGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCATACACTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAAGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGTCTTTGTT]
[+] EMBL CD199529             [                                                                                              TAGGCTTATCTCAGTCATTTTATTCAGTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGGAATATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATTAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAACCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATAT                                                                                                                                 ]




>consensus_10494#2
GGTACGCATGCGTTTAAAATGAGCAATCTAAAGAATATCGCGAATTTCGGTGTCATAGGT
GGAGGTTTCATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACA
GTGGATGGAGGTCATCGAGCAATTATGTTCAGTCGTATTGGTGGCGTGCAGAATGAAATA
TATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATATT
AGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAAC
CTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTACA
CTGGGGACTGATTATGATGAACGAGTTTTACCATCTATAGTCAATGAAGTTCTGAAGGCG
GTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGTCTTTGTT

consensusID : consensus_10494#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [ATCGACTGAAAACGGTTTATATTTCATTCTGCACGCCACCAATACGACTGAACATAATTGCTCGATGACCTCCATCCACTGTATAAAATGACTGAGATAAGCCTAAAGTAAGAGCTGCAGCAGCACCAATGAAACCTCCACCTATGACACCGAAATTCGCGATATTCTTTAGATTGTTCATTTTAAACGCATGCGTACC]

[+] EMBL CD162985             [ATCGACTGAAAACGGTTTATATTTCATTCTGCACGCCACCAATACGACTGAACATAATTGCTCGATGACCTCCATCCACTGTATAAAATGACTGAGATAAGCCTAAAGTAAGAGCTGCAGCAGCACCAATGAAACCTCCACCTATGACACCGAAATTCGCGATATTCTTTAGATTGTTCATTTTAAACGCATGCGTACC]




>consensus_10494#3
ATCGACTGAAAACGGTTTATATTTCATTCTGCACGCCACCAATACGACTGAACATAATTG
CTCGATGACCTCCATCCACTGTATAAAATGACTGAGATAAGCCTAAAGTAAGAGCTGCAG
CAGCACCAATGAAACCTCCACCTATGACACCGAAATTCGCGATATTCTTTAGATTGTTCA
TTTTAAACGCATGCGTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10494#0      ------------------------------ATTGGTGCTGCTGCAGCTCTTACTTTAGGC 30
consensus_10494#2      GGTACGCATGCGTTTAAAATGAGCAATCTAAAGAATATCGCGAATTTCGGTGTCATAGGT 60
consensus_10494#1      ------------------------------------------------------------
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      TTA--TCTCAGTCATTTTATACAGGTACGTCAAACAAACTAAGGACAATTTAGTCAAATA 88
consensus_10494#2      GGAGGTTTCATTGGTGCTGCTGCAGCTCTTACTTTAGGCTTATCTCAGTCATTTTATACA 120
consensus_10494#1      ------------------------------------------------------------
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      GTGGATGGAGGTCATCGAGCAATTATG-TTCAGTCGTATTGGTGGCGTGCAGAATGAAAT 147
consensus_10494#2      GTGGATGGAGGTCATCGAGCAATTATG-TTCAGTCGTATTGGTGGCGTGCAGAATGAAAT 179
consensus_10494#1      --------------CCGAAGGCTTACACTTCAGGTATTTTGGTTGACT--TAAATGAATT 44
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      ATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATAT 207
consensus_10494#2      ATATACCGAAGGCTTACACTTCAGAATCCCGTGGTTCCAGTACCCTATTATTTATGATAT 239
consensus_10494#1      ATAT-----------------TAGAATCCCGTGGTTCCAGTACCATATTATTTATGATAT 87
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      TAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAA 267
consensus_10494#2      TAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAA 299
consensus_10494#1      TAGATCTCGACCACGGAAAATCACATCGCCAACTGGTAGCAAAGACCTTCAAACGGTTAA 147
consensus_10494#3      -----------------------------------------ATCGACTGAAAACGGTTTA 19
                                                                *    **  ******** *

consensus_10494#0      CCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTAC 327
consensus_10494#2      CCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTAC 359
consensus_10494#1      CCTCACATTGCGCGTATTGTCTCGACCTGAAGTGTCACAGCTTCCACATATATATCGTAC 207
consensus_10494#3      TATTTCATTCTGCACGCCACC--AATACGACTGAACATAATTGCTCGATGACCTCCATCC 77
                         *  ****  **       *   *   **     ** *  * *   **      * * *

consensus_10494#0      ACTGGG--GACTGATTATGATGAACGAGTTTTACCATCTATAGT-----CAATGAAGTTC 380
consensus_10494#2      ACTGGG--GACTGATTATGATGAACGAGTTTTACCATCTATAGT-----CAATGAAGTTC 412
consensus_10494#1      ATTGGG--GACTGATTATGATGAACGAGTTTTACCATCTATAGT-----CAATGAAGTTC 260
consensus_10494#3      ACTGTATAAAATGACTGAGATAAGCCTAAAGTAAGAGCTGCAGCAGCACCAATGAAACCT 137
                       * **     * *** *  *** * *      **  * **  **      *******    

consensus_10494#0      TGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGT 440
consensus_10494#2      TGAAGGCGGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGT 472
consensus_10494#1      TGAAGGCAGTCGTTGCTAAATTTAATGCTAGTCAGTTAATTACTCAGCGCCAGCAAGTGT 320
consensus_10494#3      CCA---CCTATGACACCGAAATTCGCGATATTCTTTAGATTGTTCATTTTAAACGCATGC 194
                         *   *    *   *  ** **   * ** **  *  ***  ***     * *   ** 

consensus_10494#0      CTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTCGATG 500
consensus_10494#2      CTTTGTT----------------------------------------------------- 479
consensus_10494#1      CTTTGTTGATTCGCAAACAGCTTGTCGAAAGAGCTAGTGATTTCCACATAATTGTTGATG 380
consensus_10494#3      GTACC------------------------------------------------------- 199
                        *                                                          

consensus_10494#0      ATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGAAGCTAAAC 560
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      ATGTCTCCATCACTGATTTGACTTTCTCACAAGTTTACTCTGCTGCTGTTGAAGCTAAAC 440
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      AGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAAC 620
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      AGATTGCTTTACAAGAAGCACAGCGTGCTCAGTTCCTCGTAGAACGTGCGAAACAAGAAC 500
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      GTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATG 680
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      GTCAGCAAAAGATAGTTACTGCTGAAGGTGAGGCTCAAGCTGCCAAACTGATTGGTGATG 560
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      CCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAGAATANAAGCGGCTACTCAGATTG 740
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      CCCTTTCTCAGAACCCTGGATATCTTAAGCTTCGGAAAATAAAAGCGGCTACTCAGATTG 620
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      CTCGAACGGTTGCTCAGTCTCAAA-TCGTGCATTTT-ACATTCTGGTTCTTTAATCTC-- 796
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      CTCGAACGGTTGCTCAGTCTCAAAATCGTGCATTTTTACATTCTGGTTCTTTAATCCTCA 680
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      ATGNTGCTGATCCTAAGT-CGACGCTGGTCTGGATATTT---AAGAANAATAAACTGAAG 852
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      ATGTTGCTGATCCTAAGTTCGACGCTGGTCTGGATATTTTAAAGAAAAAATAAACTGAAG 740
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      TGTCGATAGTATTACACCTTTAAATCTAGACAGCATTNCGAGTGATTTGACTGTACACCT 912
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      TGTCGGATAGTATTAACACCTTTAAAAATCTTAGACTAGCATTTCCGAGTGTATTTTGTA 800
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      TTACTATCAACTATGTCTGGATCGCTGAGACTGCATAA---------------------- 950
consensus_10494#2      ------------------------------------------------------------
consensus_10494#1      CTGTTACATCCCTTAACTTAATTCAACACTATGTTTCTGTGAATCCGACTGATGTAGATG 860
consensus_10494#3      ------------------------------------------------------------
                                                                                   

consensus_10494#0      ----------------
consensus_10494#2      ----------------
consensus_10494#1      CAAATAAAATAAAAAA 876
consensus_10494#3      ----------------