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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 592 fasta sequence
[TATTGTGATGGACGGGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG-AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA]
[-] EMBL BG930796 [TATTGTGATGGACGGGGGTTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg ]
[+] EMBL CD083737 [ aGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTTTTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTG ]
[-] EMBL BG931052 [ GGATCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTT CCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTCTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ]
[+] EMBL BG930408 [ GGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGA ]
[+] EMBL BG930833 [ GTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAGCATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGA ]
[+] EMBL BG930498 [ tTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCCCCAtctat ]
[-] EMBL BG930826 [ TCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ]
[-] EMBL BG930391 [ TCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGATCCCCCGTCGGCATT ]
[-] EMBL BG931094 [ TCCGATATTGGTAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGG AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ]
[-] EMBL BG930993 [ TTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATCACGGGG ATAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAACCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGATTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg ]
[-] EMBL BG930736 [ GCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGA AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAAAAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAg ]
[-] EMBL BG930148 [ CTTGAAGGTATTTCCCCCCAGCATGCTAGTATAACGGGA AAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGAC ]
[-] EMBL BG931279 [ AAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACGAAGTTTAACATGGTCATTCCCAGATATTGTAAAGGTCCGCTCGCACAAGCTCTGTTCGCATCGTTTCCTGATGAAGTATTTTTATCAGACAGCAACATACGGGGTTCATACACAAGATTATTTGGTCAACGCTGGAGACATCGTGCTTATTGAAAAAGCTGAC ]
[-] EMBL CD170602 [ TGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACCTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA]
[-] EMBL CD170498 [ TGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGCAACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGAAAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCCTCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAATTGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACTTTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA]
consensusID : consensus_10501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACTGAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGNCACATACTGGGTTCATACACAA]
[+] EMBL CD077433 [GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACTGAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGGTATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGCAATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAAGGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGNCACATACTGGGTTCATACACAA]
consensusID : consensus_10501#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 230 fasta sequence
[GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCAGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT]
[+] EMBL AA566160 [GTGGCTTAAAAATATTCAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGGTATTTCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGCAATTGGGAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCAGATATTGTAAAGGTCGCTTCTGACAACGACTGTTTGATGTTCTGAGAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10501#1 GCGGCCAAGATTCGGCACGAGGGTGCGACGCTGAAGAGACCTTGAGAATGGACAACCACT 60
consensus_10501#2 ------------------------------------------------------------
consensus_10501#0 ----------------------------------------------TATTGTGATGGACG 14
consensus_10501#1 GAGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT 120
consensus_10501#2 --------------------------------------------GTGGCTTAAAAATATT 16
consensus_10501#0 GGGGGTCATAAACAGATCAAGTATGGTCCGATATTGGAAGCATCGTGGCTTAAAAATATT 74
****************
consensus_10501#1 CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG 180
consensus_10501#2 CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAACGCTGAGCTTGGAGG 76
consensus_10501#0 CAAAAACATCGAACCCCATATCCAGAAATATTTTCCTTATCACAAGCCTGAGCTTGGAGG 134
********************************************* *************
consensus_10501#1 TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC 240
consensus_10501#2 TATTTCCCC--AGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCAAACGATTATGC 134
consensus_10501#0 TATTTCCCCCCAGCATGCTAGTATAACGGGGAAAAAAGCCAAAGTGCCTTTCGATTATGC 194
********* ************************************* *********
consensus_10501#1 AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA 300
consensus_10501#2 AATTGGG-AAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCC-AGATATTGTAAA 192
consensus_10501#0 AATTGGGCAAATAGTGCCGTTTTCACAAAGTTTAACATCGTCATTCCCAGATATTGTAAA 254
******* *************************************** ************
consensus_10501#1 GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGN 360
consensus_10501#2 GGTCGCTTCTGACAACGACTGTTTGA----TGTTCTGA--GAGT---------------- 230
consensus_10501#0 GGTCCGCTTGCACAAGCTCTGTTTGAATCGTTTCCTGATGAAGTATTTTTATCAAACAGC 314
**** * **** ******** * * **** ***
consensus_10501#1 CACATACTGGGTTCATACACAA-------------------------------------- 382
consensus_10501#2 ------------------------------------------------------------
consensus_10501#0 AACATACTGGGTTCATACACAAGGTTTTTTGGTCAACGTTGGAGACATCGTGCTTATTGA 374
consensus_10501#1 ------------------------------------------------------------
consensus_10501#2 ------------------------------------------------------------
consensus_10501#0 AAAAGCTGACCCACCAATGGCATTCAATACCATGTACAAACTAAAGAAAGTCGAATTCCC 434
consensus_10501#1 ------------------------------------------------------------
consensus_10501#2 ------------------------------------------------------------
consensus_10501#0 TCTTGGTAATCTTACTGATCCTGTCACAGGACTACGTTCCGAAGGTCCTGAGTATTCAAT 494
consensus_10501#1 ------------------------------------------------------------
consensus_10501#2 ------------------------------------------------------------
consensus_10501#0 TGAAACACTGAGGTCTATTCTGAATCGAGAAAAGTGTTGAAAACCAAATTCATTTCTACT 554
consensus_10501#1 --------------------------------------
consensus_10501#2 --------------------------------------
consensus_10501#0 TTGTTTTGCGATAAATGATCACTTTTTTCAATATACGA 592
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||