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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1031 fasta sequence
[CACACACGCACACAACCCCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCGGAAATACATCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACAC]
[-] EMBL CD097950 [CACACACGCACACAACCCCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTC ]
[-] EMBL CD097908 [ ACACAACCGCCTCATTCTCGACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTC ]
[+] EMBL CD189974 [ GAGACCAAAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCANACTAAGAACACAATTCTCAATATTCAGAGATTACCACANACCGTAACACCACATCAAACCAGAACAATTCAACAAc ]
[+] EMBL CD123213 [ CCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAA ]
[-] EMBL CD168637 [ CCACCTTCCCACAAAATCTCACAATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCA ]
[+] EMBL CD072435 [ AATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGGTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATNCATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATC ]
[+] EMBL CD072416 [ AATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACATCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTCATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACGACACACTATATCATC ]
[-] EMBL CD064142 [ cgCATTACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACATCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTTACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAGTTCCCTCATCAtaa ]
[+] EMBL CD096554 [ TATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCGGAAATACATCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACA ]
[-] EMBL CD096498 [ ATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCAGAAATACATCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACAC]
[-] EMBL CD068197 [ TCTCCCAGATGAACAACACACTATATCATCAATCAATCCAAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTCATCACCTC AAAGTTCATCAAC ]
consensusID : consensus_10522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 570 fasta sequence
[GCCCGGTACCCTCCAACCATATTCAGAATCGTCAAAACCAATAATA-CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTGNTGATGCTC]
[+] EMBL CD066185 [GCCCGGTACCCTCC ACTCTATTCAGAATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTGCCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCT ]
[+] EMBL CD066222 [ CGGTACCCTCCAACCATATTCAGAATCGTCAAAACCAATAATACCTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTGCCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTGNTGATGCTC]
[-] EMBL CD118520 [ ccaCTCCAACCATATTCAGAATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTNTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGNTAAGTGAGAACCAGTACAACCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGagtgg ]
[-] EMBL CD202837 [ CATATTCAGAATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGAACAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCGACAACAACACCATACGATACACTGACAAACACGTAAACATCTA ]
[-] EMBL CD201470 [ AATCGTCAAAACCAATAATA CTACTCCCTATCATACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAACCGCTTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTAACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACAAACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATCACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCAGTATATCGCTGCCCCGCCTTatca ]
consensusID : consensus_10522#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 179 fasta sequence
[GAAGACGGTAGACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGA]
[+] EMBL CD061532 [GAAGACGGTAGACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCACACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACCGAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAGGACGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10522#1 GCCCGGTACCCTCCAACCATATTCAGAATCGTCAAAACCAATAATACTACTCCCTATCAT 60
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ------------------------------------------------------------
consensus_10522#1 ACAAACACGATCAGTCAAACAGATCAACAACAAAAACACCAACAACACACACGCACACAA 120
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ---------------------------------------------CACACACGCACACAA 15
consensus_10522#1 CCGCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTA 180
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 CCCCCTCATTCTCAACAGACATACGATCAACATTACTGTTCAAGTCATCCCTAATCTCTA 75
consensus_10522#1 ACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCA 240
consensus_10522#2 -------GAAGACGGTAGACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCA 53
consensus_10522#0 ACCTATCAACAGAGTTCAACACACGTCCCAACACAAACCAATACTAGACATCATTCGTCA 135
* * * ******************************************
consensus_10522#1 CACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACC 300
consensus_10522#2 CACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACC 113
consensus_10522#0 CACTCACACTAAACACATCTACCTGGTGCTAAGTGAGAACCAGTACAATCCTGGTTCACC 195
************************************************************
consensus_10522#1 GAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAG 360
consensus_10522#2 GAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAG 173
consensus_10522#0 GAAGAGACCAGAAAACATTTCCCCTTCGTCATTGGCTTCCTGAAAACTATGCATCTCCAG 255
************************************************************
consensus_10522#1 GACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACA 420
consensus_10522#2 GACGGA------------------------------------------------------ 179
consensus_10522#0 GACGGATCAACAAGGGTTCTTACGCAAACACCAACAACAACACCATACGATACACTGACA 315
******
consensus_10522#1 AACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATC 480
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 AACACGTAAACATCTACACCTTCTTTAACAATCGATACTCTAACTACACTAATCTCAATC 375
consensus_10522#1 ACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCA 540
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ACATCACCAATATTACTTACTTGTTTGTTTGTAAATAAAGACAAACTTCCACGCACACCA 435
consensus_10522#1 GTATATCGCTGCCCCGCCTTGNTGATGCTC------------------------------ 570
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 GTATATCGCTGCCCCGCCTTATCAATTCGCTCATCCACCCACCTTCCCACAAAATCTCAC 495
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 AATTACCAACACACTCATTATTGACCCTCACAATACATCCCTAGATCCACTGAGAACACA 555
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 TCAACTGTCAGACACTAAACCACAACGCTGCTAACAAAATTTACTGAAATACATCACCTC 615
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ATTCAAATGTAAACTCTCACATAAACACACACCACTACCGTAAAACCCTCAACACACATT 675
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ACAGCAAACTAAGAACACAATTCTCAATATTCAGAGATTACCACAAACCGTAACACCACA 735
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 TCAAACCAGACAAATTCAACAATAAATTCATTCCCTCATTAACGTTCAACACGCACACTT 795
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ACAATATCACCACACACAACGTCTCCCAGATGAACAACACACTATATCATCAATCAATCC 855
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 AAATCGAACAGCTCGGACAAAGACCACACATCTCACTTAAATCAATCACCTAATTCCCTC 915
consensus_10522#1 ------------------------------------------------------------
consensus_10522#2 ------------------------------------------------------------
consensus_10522#0 ATCACCTCAAAAAGTTCATCAACACGCGTCACACTCAACAAAACACATCTCGGAAATACA 975
consensus_10522#1 --------------------------------------------------------
consensus_10522#2 --------------------------------------------------------
consensus_10522#0 TCCCACAATCACTCCCAAATACAACTAAACCACACCAATCCCACACACACACACAC 1031
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||