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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10574#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 555 fasta sequence
[CCTCGAGGCCAAAAATTCGGCACGATATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGGAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAAGTAAATAAATACATATCTCTT]
[+] EMBL CD080504 [CCTCGAGGCCAAAAATTCGGCACGAGGTTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGGAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAAGTAAATAAATACATATCTCT ]
[+] EMBL CD123717 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAATAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAA CATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACCCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123677 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAAGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCAC ]
[+] EMBL CD123702 [ TAATTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123749 [ TAATTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123689 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123693 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123716 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123727 [ TATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL CD123683 [ TATTTACCTTGCCATTGGTGGCATCGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[-] EMBL CD123703 [ ATTTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCT ]
[-] EMBL CD074414 [ TTACCTTGCCATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGGAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAAGTAAATAAATACATATCTCTT]
[+] EMBL AI764822 [ TCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCATCTGACATGATATACTTACCAGAGTTAACTCCTTCCAGCTTGCATAATGACAAAACAATTCATCCGTGTAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATCAAATGATCATAGCAAACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAGG AATAAACCTTAGT AATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTTCCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGGAAAACAAGTAAAT AATACATATCTCT ]
consensusID : consensus_10574#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 389 fasta sequence
[CGGAGCTACCAACAAATTAACACGCTAATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCT-GTCGCAACTCACC-AATTG-CTCAAACCCCTCCATCT-GACAT-GATATACTTAACCAGAGCTTAATTCCTTCCAGCTTGCATAATGGACAAAACCATTCCATCCGTGATAATGGTCACAGGGGAAAAGATCCTCTAAATGTGTCGGGTCAACATCAATGTTCTAGCGCAATTTAGAAGGGGAAGATGCCCCTTTGA]
[+] EMBL CD155579 [CGGAGCTACCAACAAATTAACACGCTAATTGGTGGCATGGAACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCT GTCGCAACTCACC AATTG CTCAAACCCCTCCATCT GACAT GATATACTTA ]
[+] EMBL CD155783 [CGGAGCTACCAACAAATTAACACGTTAATTGGTGGCATGGGACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCT GTCGCAAC ]
[+] EMBL CD162396 [ AACGTCAACCAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTC ]
[+] EMBL AW146503 [ TGTTAAGGACTTATCTCAAATACCATCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCAGCTGGTCGCAACTCACCAAATTG CTCAAACCCCTCCATCT GACAT GTTATACTTTACCAGAGCTTAATTCCTTCCAGCTTGCATAATGGACAAAACCATTCCATCCGTGATAATGGTCACAGGGGAAAAGATCCTCTAAATGTGTCGGGTCAACATCAATGTTCTAGCGCAATTTAGAAGGGGAAGATGCCCCTTTGA]
[+] EMBL AI014205 [ TCTAACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAATATATGAACGCGATTTTATTCTCANCT GTCGCAACTCACC AATTGNCTCAAACCCCTCCATCTGGACATGGATA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10574#0 CCTCGAGGCCAAAAATTCGGCACGATATTTACCTTGCCATTGGTGGCATGGAACGTCAAC 60
consensus_10574#1 -----------CGGAGCTACCAACAAATTAACACGCTAATTGGTGGCATGGAACGTCAAC 49
* ** * *** ** **********************
consensus_10574#0 CAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTA 120
consensus_10574#1 CAACGGAACCAATTCCAGTGAAGAGAGTTACTGTTAAGGACTTATCTCAAATACCATCTA 109
************************************************************
consensus_10574#0 ACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAA 180
consensus_10574#1 ACCATGGTACAACTCCCGGTGGAACTTTGTTCAGTACTACTCCGGGTGGCACTCGTATAA 169
************************************************************
consensus_10574#0 TATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCAT 240
consensus_10574#1 TATATGAACGCGATTTTATTCTCAGCTGTCGCAACTCACCAATTGCTCAAACCCCTCCAT 229
************************************************************
consensus_10574#0 CTGACATGATATACTTA-CCAGAG-TTAACTCCTTCCAGCTTGCATAATG-ACAAAACAA 297
consensus_10574#1 CTGACATGATATACTTAACCAGAGCTTAATTCCTTCCAGCTTGCATAATGGACAAAACCA 289
***************** ****** **** ******************** ******* *
consensus_10574#0 TTC-ATCCGTG-TAATGGTCACAAGGTGAAAGATTCTCTAAATGTGTCTGAGTCAACATC 355
consensus_10574#1 TTCCATCCGTGATAATGGTCACAGGGGAAAAGATCCTCTAAATGTGTC-GGGTCAACATC 348
*** ******* *********** ** ****** ************* * *********
consensus_10574#0 AAATGATCATAGCA-AACTTAGCAAAGGCGAAGATGCACCATTTGAAATGGATGTTTGAG 414
consensus_10574#1 AA-TGTTC-TAGCGCAATTTAG--AAGGGGAAGATGC-CCCTTTGA-------------- 389
** ** ** **** ** **** **** ******** ** *****
consensus_10574#0 GAAATAAACCTTAGTAAATGACGTTTATAAACATTTGTAATTCAGATATTCTCTATTCTT 474
consensus_10574#1 ------------------------------------------------------------
consensus_10574#0 CCGTTTACGATCCATTATTGTTATTATTTTTGTTATGTTTTCAACCAACCTGAAAAACAA 534
consensus_10574#1 ------------------------------------------------------------
consensus_10574#0 GTAAATAAATACATATCTCTT 555
consensus_10574#1 ---------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||