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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1059 fasta sequence
[GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC-AAATAAACAAAAG-TTCTATCAAATCT-ATAT-ATATAT-ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT-GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA-GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT-TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[+] EMBL SMW797 [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCTAATATAATATATAATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGT ]
[+] EMBL AI977597 [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCCTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGT ]
[+] EMBL SMAA43861 [GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGANATAATAAATAGTATCATTGTTCTTTTCCCCCNAAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTTGGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAg ]
[+] EMBL CD074227 [cCATTTATTAATTTGCATGCTTTAAAGAGCAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAG TTCTATCAAATCT ATAT ATATAT ATATGTATATGTATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAAATAGATACCCATTATGGTTTACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATTAAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAAAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGGGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTAT ]
[-] EMBL SM952 [ TTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATTGTTCTTTTCCCCC AAATAAACAAAAGTTTCTATCAAATCT ATAT A ]
[+] EMBL CD136772 [ TTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACGATAAATAACCCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATT ]
[-] EMBL CD139808 [ GATAAATAACNCAAATTACTTTT GGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGTAAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTGTGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCAGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGA ]
[-] EMBL CD117505 [ agGTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGAAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATAGTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG ]
[+] EMBL CD198583 [ TGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTAAAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCC TTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGGTGATAAATT ]
[-] EMBL CD131539 [ TTTTTGTTGAAAATTTATTCTTTGTTGCCTTGGCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGAAATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGAAGAA GGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTATGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL AI618988 [ AGAAGGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAATATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCGATGTGCACCAAATGACATACCAGCTCAGTGATGCAACT ]
[+] EMBL CD131657 [ CATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCAC ]
[-] EMBL CD131460 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD131729 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD131527 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD131603 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCCTTTGATATATCATCACA]
[-] EMBL CD185117 [ ATTAATATGTCGATGTGCACCAAATGACATACCAGCT TGTGATGCAACTTGATTTTGTGGTAAACCCATTTGTAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATGACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
consensusID : consensus_10591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 177 fasta sequence
[TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
[-] EMBL CD185259 [TTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATGACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10591#0 GCATTTATTAAATTGCATGCTTTAAAGAGTAATAATATAGAAATAATAAATAGTATCATT 60
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 GTTCTTTTCCCCCAAATAAACAAAAGTTCTATCAAATCTATATATATATATATGTATATG 120
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 TATGTATACCACATTCCAAGATCTTTCTTTCAATGAATCAGATAGATACCCATTATGGTT 180
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 TACTTCTTACTGAATATAACTACTATGTTACACTCACACACAAACAATCTTTCATAGATT 240
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 AAGCTTTATGACCATTGTCATCCTGAAGGTAAGCAGAAATAATCTTGTGTTTATTCCACG 300
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 ATAAATAACCCAAATTACTTTTGGTTGGTTTCAAAATTCAATGGTAAACACACAATCTGT 360
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 AAATAAATAAATAGATAAATAAATAAAGAATGTATTCCCGTGAAGGTCATTTGTTCATTG 420
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 TGTATGATTACGCTTGTGTACCCCGTCGTGGAGGAGGTCGAGCATAGGTCGTACACACCA 480
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 GTATGATTAGAAAGTGTAAATAAATAAACAAACATAAGTGTAGAATTAGATTAAAGGCTA 540
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 AAAGAATTTTATGTTTTTCTCAGAAAAGTTTTTGTTGAAAATTTATTCTTTGTTGCCTTG 600
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 GCAACTAGAAAAAACTTATGATTGTTCGAATAATTATACCAGAAAAGAGAAAAAAGAAGA 660
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 AATTTCTCCAATATTGGCTTTTAAAAATAAATAATTATGTGCATTTTGTTTTGACAGGGA 720
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 AGAAGGGGGCTGTGTGTGTGTGTATGTGTCAATTAGGTTCCAGAAAAGAAATTTAATCAA 780
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 TATTTGTAAACACAATACATCATTCCTCTCCTTTTTTTAATGTGAATCATTAATATGTCG 840
consensus_10591#1 ------------------------------------------------------------
consensus_10591#0 ATGTGCACCAAATGACATACCAGCTTGTGATGCAACTTGATTTTGTGGTAAACCCATTTG 900
consensus_10591#1 -----------------------------------------TTTATT-TGTACCATATTG 18
*** * * *** ***
consensus_10591#0 TAATCCAATAACCGATGCACCATCAGCTGATAAATTATCACAACGTATATCAGCAATATG 960
consensus_10591#1 TAAACTTATAATATTTTGTCCTTCTTTTGATATATCATCACATCGTATATCAGCTATATG 78
*** * **** * ** ** ***** ** ****** *********** *****
consensus_10591#0 ACGTTGTCCACCCATACGCATACCTTTTTGACTAGCTAATTTATTTGTACCATATTGTAA 1020
consensus_10591#1 ACGACTACTACCAATTCGCATACCCTTTTGACTAGCTAATTTATTTGTACCATATTGTAA 138
*** * *** ** ******** ***********************************
consensus_10591#0 ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA 1059
consensus_10591#1 ACTTATAATATTTTGTCCTTCTTTTGATATATCATCACA 177
***************************************
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||