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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10605#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 963 fasta sequence
[NATTCGGCACGAGGCGTTGGTACTGTGTTAGGTCGTAATTTATTTGTTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGACAACATCTGTTACTGTTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTCTTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCAAAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTTGCCTATGTATAGGGTTACTTTGTGGTTCAGTTGGATACATCGCTGCTAATAGATTCGTTCGTAAAATATACTCGATTGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTACTCTTTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTCCCCTTCTGTTCTTGGGGAATGTTTTGTTCCACAATTCTGGGCTTCTTCGTTTCTGGGGTAAGTTGTTTTGAAATTTTCATCTATGGCCAATATTTTATTTTTTAAATTAGCATTGTTCATATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTTTTATTCTTCCATTCCCATTAATTATAATTACGTTTCGTTATAGTTTCTGA--TTTTTTTCTCCTCACTCATGGTTTTTATTGATTTTAGATTGTTTCCTGTCAAACGTAACGAACTGTATTTTGCTCCCTATTGTAAACAGTGACATGATATAAAGAGTA]
[+] EMBL CD083211 [NATTCGGCACGAGGCGTTGGTACTGTGTTAGGTCGTAATTTATTTGTTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGACAACATCTGTTACTGTTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTCTTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCAAAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTTGCCTATGTATAGGGTTACTTTGTGGTTCAGTTGGATACATCGCTGCTAATAGATTCGTTCGTAAAATATACTCGATTGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTACTCTNTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGT ]
[+] EMBL CD202823 [ CAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGACAACATCTGTTACTGTTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTCTTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCAAAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTTGCCTATGTATAGGGTTAC ]
[-] EMBL CD076784 [ TGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTACTCTTTGTTTTGGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTCCCCTTCTGTTCTTGGGGAATGTTTTGTTCCACAATTCTGGGCTTCTTCGTTTCTGGGGTAAGTTGTTTTGAAATTTTCATCTATGGCCAATATTTTATTTTTTAAATTAGCATTGTTCATATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTTTTATTCTTCCATTCCCATTAATTATAATTACGTTTCGTTATAGTTTCTGATTTTTTTTTCTCCTCACTCATGGTTTTTATTGATTTTAGATTGTTTCCTGTCAAACGTAACGAACTGTATTTTGCTCCCTATTGTAAACAGTGACATGATATAAAGAGTA]
[-] EMBL CD085915 [ TAAACACGTCCATACATTGTTACTCTTTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTCACCTTCTGTTCTTTGTGTATGTTTTGTTCCACTATTCTGTGCTTCTTCGTTTCTGGTGTAAGTTGTTTTGAAATTTTCATCTATGGTCAATATTTTATTTCTTAAGTTAGCATTGTTCATATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTCTTACTCTTACATTACTATTAATTATAATTACGTTTCGTTATAGTTTCTGA TTTTTTTCTCCTCctgtg ]
consensusID : consensus_10605#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 495 fasta sequence
[TCGCGTCAAGGTTTTAATCTAGATTAGACAAGTTGTTTTCTGCATAGAAGTGGGTAGACGAATCAATGACGTAACATAGGTAGATACCACATTAGTCCCTTTCGGTGGTGCAGGGTGTTAGATCACAAATGAGGCTTCTATATTCCTGCTGAGATTTCGTCGATGACCTACTTATAAGGAAGGGCTCGAACACTTAAGTCTTTATTTATGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAAAATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAAATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACATAGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTGAAATAGGGTGAATTCACAGATGTACAGTTAATGGGAAGTGCTGCACCTGAAGCTTGTTTTCTAATAG]
[+] EMBL CD097283 [TCGCGTCAAGGTTTTAATCTAGATTAGACAAGTTGTTTTCTGCATAGAAGTGGGTAGACGAATCAATGACGTAACATAGGTAGATACCACATTAGTCCCTTTCGGTGGTGCAGGGTGTTAGATCACAAATGAGGCTTCTATATTCCTGCTGAGATTTCGTCGATGACCTACTTATAAGGAAGGGCTCGAACACTTAAGTCTTTATTTATGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAAAATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAAATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACATAGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTGAAATAGGGTGAATTCACAGATGTACAGTTAATGGGAAGTGCTGCACCTGAAGCTTGTTTTCTAATAG]
[+] EMBL CD097286 [TCGCGTCAAGGTTTTAATCTAGATTAGACAAGTTGTTTTCTGCATAGAAGTGGGTAGACGAATCAATGACGTAACATAGGTAGATACCACATTAGTCCCTTTCGGTGGTGCAGGGTGTTAGATCACAAATGAGGCTTCTATATTCCTGCTGAGACTTCGTCGATGACCTACTTATAAGGAAGGGCTCGAACACTTAAGCCTTTATTTATGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAAAATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAAATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACATAGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTGAAATAGGGTGAATTCACAGATGTACAGTTAATGGGAAGTGGTGCACCTGAA ]
consensusID : consensus_10605#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 461 fasta sequence
[GGGTGGTGGCAGTCTATATGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGA]
[-] EMBL CD146619 [GGGTGGTGGCAGTCTATATGCACGTATGTCTGGCAAACGCTGGCTTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTT ]
[+] EMBL CD198550 [ ATGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCT ]
[-] EMBL CD142494 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATTCTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ]
[-] EMBL CD198471 [ TGCACGTATGTCTGGCAAACGCTGGATACGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ]
[-] EMBL CD142320 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ]
[-] EMBL CD142365 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ]
[-] EMBL CD142481 [ TGCACGTATGTCTGGCTAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ]
[-] EMBL CD142417 [ TGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTT ]
[+] EMBL CD170059 [ CACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGG ]
[+] EMBL CD113070 [ CACGTGTGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGG ]
[-] EMBL CD201067 [ ACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTATGGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGCCATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCATTATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATT ]
[+] EMBL BG931590 [ GTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATTTGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCAATACCGGAAAAGAAATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTGGGCTGCTACCATTTGGATCAATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTTTTTGGCTTCACTTTGCTTGTTTTATTTCTTCTAATTGCTGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10605#0 ------------------------------------------------------------
consensus_10605#2 GGGTGGTGGCAGTCTATATGCACGTATGTCTGGCAAACGCTGGATTCGTCAATTCCTTAT 60
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ------------------------------------------------------------
consensus_10605#2 GGGTGCTACATTACTGCCATTCCTAATATGTTGTTCTACTTTTCTGGTAAATCTTGTTGC 120
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ------------------------------------------------------------
consensus_10605#2 CATATACTATCGTACGAGTCGCTCTATCCCATTCTTGACAATGCTCTCCATCACTTCCAT 180
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ---------------NATTCGGCACGAGGC-GTTGGTACTGTGTTAGGTCGTAATTTATT 44
consensus_10605#2 TATCTTATTCGTAGTCATTCCATTAAATTTAGTTGGTACTGTGTTAGGTCGTAATTTATT 240
consensus_10605#1 ------------------TCGCGTCAAGGT--TTTAATCTAGATTAGAC---AAGTTGTT 37
** * ** ** **** ** ** **
consensus_10605#0 TGTTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCA-ATACCGGAAAAGA 103
consensus_10605#2 TGGTTTAGCGAATTTCCCATGTCGAGTGAATCCTGTTCCTAAAGCA-ATACCGGAAAAGA 299
consensus_10605#1 TTCTGCATAGAAGTGGGTA-GACGAATCAATGACGTAACATAGGTAGATACCACATTAG- 95
* * * *** * * * *** * *** ** * * * * ***** * **
consensus_10605#0 AATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTG-GGCTGCTACCATTTGGATCA 162
consensus_10605#2 AATGGTTTATGGAACCGTCATTTCTCATTATTGCAAGTG-GGCTGCTACCATTTGGATCA 358
consensus_10605#1 --TCCCTTTCGGTGGTGCAGGGTGTTAG-ATCACAAATGAGGCTTCTATATTCCTGCTGA 152
* ** ** * * * * ** *** ** **** *** * * * *
consensus_10605#0 ATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTT 222
consensus_10605#2 ATTTTTATTGAACTATATTTTGTCTTCACATCATTTTGGGCGTATAAAATTTACTTTGTT 418
consensus_10605#1 GATTTCGTCGA--TGACCTACTTATAAGGAAGGGCTCGAACACTTAAGTCTTTATTTA-- 208
*** * ** * * * * * * * * *** ** ***
consensus_10605#0 TTTGGCTTCACTTTGCTTGTTTTATTTCT-TCTAATTGCTGTGACAACATCTGT-TACTG 280
consensus_10605#2 TTTGGCTTCACTTTGCTTGTTTTATTTCT-TCTAATTGCTGTGA---------------- 461
consensus_10605#1 -TGAACGTGACGTTGCAGACTAGAACTGAATTTGTCTGCTGAAAGGTACTTAGTATTCAA 267
* * * ** **** * * * * * ***** *
consensus_10605#0 TTGTGGGCACCTATTTCTTGTTGAATTCTGAGGATTATCGTTGGCAATGGACAAGTTTTC 340
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 AATTCTGAAATTGCCGCTCAAAGCATTGCTAGAAGAACAAAGAATTATGCGTTACCTCAA 327
consensus_10605#0 TTTCTGGTGCATCGATCACGTTTTATGCATATTTATATTCTATTTACTACTACTTTTTCA 400
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ATTCGAATAAGTCTAAAAGTGTGCGACCAAAGAGACTTACCACAAAGTAACCCTATACAT 387
consensus_10605#0 AAACCAAAATGTTTGGCCTATTTCAAACTACTTTCTATTTCGGTTACATGGCATTGTTTT 460
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 AGGCAAAACAATGCCATGTAACCGAAATAGAAAGTAGTTTG----AAATAGGGTGAATTC 443
consensus_10605#0 GCCTATGTATAGGGTTACTTTGTGGTTCAGTTGGATACATCGCTGCTAATAGATTCGTTC 520
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ACAGATGTACAGTTAATGGGAAGTGCTGCACCTGAAGCTTGTTTTCTAATAG-------- 495
consensus_10605#0 GTAAAATATACTCGATTGTCAAGGTGGATTGAAATGCCTAAACACGTCCATACATTGTTA 580
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CTCTTTGTTTTCGTATGAAATACTTAAGCTGTGATTATTGTCAACGTTTTCCCCTTCTTC 640
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CCCTTCTGTTCTTGGGGAATGTTTTGTTCCACAATTCTGGGCTTCTTCGTTTCTGGGGTA 700
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 AGTTGTTTTGAAATTTTCATCTATGGCCAATATTTTATTTTTTAAATTAGCATTGTTCAT 760
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ATAAACACACGCCAATACTTCATTTGTGTTTGAGGAATTGAGTTTTTATTCTTCCATTCC 820
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 CATTAATTATAATTACGTTTCGTTATAGTTTCTGATTTTTTTCTCCTCACTCATGGTTTT 880
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 TATTGATTTTAGATTGTTTCCTGTCAAACGTAACGAACTGTATTTTGCTCCCTATTGTAA 940
consensus_10605#2 ------------------------------------------------------------
consensus_10605#1 ------------------------------------------------------------
consensus_10605#0 ACAGTGACATGATATAAAGAGTA 963
consensus_10605#2 -----------------------
consensus_10605#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||