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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1328 fasta sequence
[CTCCAGGCCAANAATTCGGCACGAGGTGTGCACCCCATCGCAGCCGGGGCCGGATTCCTGTTTTAAGTTGGTTGCATCCTGAAAGCAAAGCAAGTCTAACCAGAGCAAGTCAACCTCTTGTTGGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTCAGCTCAGGATAGCAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGGTCAATGCAATAGCTAATATGGGCGTTGGTGGAGGTGTTGAAAGTCCAGCTTATTATGAAAATGTTCAGTATATGTTCTTAAATATACAAAATATACACGCGATGCGGGCTGCATTGACAAAAGTTTTCGAGGCCTGTTTTCCATTACCAGACGATACACGATGGTTTAAGCAACTGGCTGACTCTAAATGGCTTTATCATATTAAACAAATTATTTTCGCTGCAACCAGTGTAGCCGACAAAATTGAAAATCATAAGACATCTGTGTTAATACATTGTTCAGACGGTTGGGACCGGACAACTCAAGTTACATCTTTAGCAATGTTAATGCTAGATCCGTACTACCGTACAATACGCGGATTTGAAGTATTAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACAACGCACAGGTGGACCTACCGATGGTGGAATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACT-GGTGGAGGGCGACCATCAAGTCCTGAGGAGCGTTCCCCAGTATTTTTACAGTTCATTGATTGCGTATGGCAGACGATGCAGCAATTTCCTCACTCATTTGAATTCAACGAACGATTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTNTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTTAATATTGANTATGAAACGATTCAGGGAACTTACAGCTGCCACGCAACGTGAAATGTGTAAAACC-ACTCTCAAC-ATGTATCTGATNACTC-ACACACAGTAGGTCCCGTTCAAACAG-TC-AAGATATG-AAATGTACTC-TCAGC-ATC-ACTG-AATGNGA-A-TATCTT--ATCTC--TTNTAAA--TTAAA-TGATTATACTAAATAATACAAAAC]
[+] EMBL CD079538 [CTCCAGGCCAANAATTCGGCACGAGGTGTGCACCCCATCGCAGCCGGGGCCGGATTCCTGTTTTAAGTTGGTTGCATCCTGAAAGCAAAGCAAGTCTAACCAGAGCAAGTCAACCTCTTGTTGGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTCAGCTCAGGATAGCAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGGTCAATGCAATAGCTAATATGGGCGTTGGTGGAGGTGTTGAAAGTCCAGCTTATTATGAAAATGTTCAGTATATGTTCTTAAATATACAAAATATACACGCGATGCGGGCTGCATTGACAAAAGTTTTCGAGGCCTGTTTTCCATTACCAGACGATACACGATGGTTTAAGCAACTGGCTGACTCTAAATGGCTTTATCATATTAAACAAATTATTTTCGCTGCAACCAGTGTAGCCGACAAAATTGAAAATCATAAGACATCTGTGTTAATACATTGTTCAGACGGTTGGGACCGGACAACTCAAGTTACATCTTTAGCAATGTTAATGCTAGATCCGTACTACCGTACAATACGCGGATTTGAAGTATTAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACAACGCACAGGTGGACCTACCGATGGTGGAATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACTGGGTGGAGGG ]
[-] EMBL CD165844 [ GGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTCAGCTCAGGATAGCAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGGTCAATGCAATAGCTAATATGGGCGTTGGTGGAGGTGTTGAAAGTCCAGCTTATTATGAAAATGTTCAGTATATGTTCTTAAATATACAAAATATACACGCGATGCGGGCTGCATTGACAAAAGTTTTCGAGGCCTGTTTTCCATTACCAGACGATACACGATGGTTTAAGCAACTGGCTGACTCTAAATGGCTTTATCATATTAAACAAATTATTTTCGCTGCAACCAGTGTAGCCGACAAAATTGAAAATCATAAGATATCTGTGTTAATACATTGTTCAGACGGTTGGGACCGGACAACTCAAGTTACATCTTTAGCAATGTTAATGCTAGATCCGTACTACC ]
[-] EMBL CD157256 [ ACTCTAAATGGCTTTATCATATTAAACAAATTATTTTCGCTGCAACCAGTGTAGCCGACAAAATTGAAAATCATAAGACATCTGTGTTAATACATTGTTCAGACGGTTGGGACCGGACAACTCAAGTCACATCTTTAGCAATGTTAATGCTAGATCCGTACTACCGTACAATACGCGGATTTGAAGTATTAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACAACGCACAGGTGGACCTACCGATGGTGGAATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACT GGTGGAGGGCGACCATCAAGTCCTGAGGAGCGTTCCCCAGTATTTTTACAGTTCATTGATTGCGT ]
[+] EMBL CD079528 [ GCAACCAGTGTAGCCGACAAAATTGAAAATCATAAGACATCTGTGTTAATACATTGTTCAGACGGTTGGGACCGGACAACTCAAGTTACATCTTTAGCAATGTTAATGCTAGATCCGTACTACCGTACAATACGCGGATTTGAAGTATTAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACAACGCACAGGTGGACCTACCGATGGTGGAATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACT GGTGGAGGGCGACCATCAAGTCCTGAGGAGCGTTCCCCAGTATTTTTACAGTTCATTGATTGCGTATGGCAGACGATGCAGCAATTTCCTCACTCATTTGAATTCAACGAACGATTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTNTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTTAATATTGANTATGAAACGATTCAGGGAACTTACAGCTGCCACGCAACGTGAAATGTGTAAAACC ACTCTCAAC ATGTATCTGATNACTC ACACACAGTAGGTCCCGTTCAAACAG TC AAGATATG AAATGTACTC TCAGC ATC ACTG AATGNGA A TATCTT ATCTC TTNTAAA TTAAA TGATTATACTA ]
[+] EMBL CD077358 [ TCGTTTGGTCACAAATTTGCACATCGCACAGGTGGACCTACCGATGGTGGAATTTCTTTGCCTCCCAGCTCATCAACTGCTGTTGTTTATGAAACT GGTGGAGGGCGACCATCAAGTCCTGAGGAGCGTTCCCCAGTATTTTTACAGTTCATTGATTGCGTATGGCAGACGATGCAGCAATTTCCTCACTCATTTGAATTCAACGAACGATTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCA ]
[-] EMBL CD073794 [ ATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACT GGTGGAGGGCGACCATCAAGTCCTGAGGAGCGTTCCCCAGTATTTTTACAGTTCATTGATTGCGTATGGCAGACGATGCAGCAATTTCCTCACTCATTTGAATTCAACGAACGATTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTTTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTTAATATTGATAATGAAACGATTCAGGGAACTTACAGCTGCCACGCAACGTG AATGTGTTAAACCAACTCTCAACAATGTATCTGATAACTCAACACACAGTAGGTCCCGTTCAAACAGTTCAAAGATATGAAAATGTACTCTTCAGCAATCAACTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATGTTAAATTGATTTTAATTAATAATACAAAAC]
[+] EMBL CD131164 [ CCAGTATTTTTACAGTTCATTGATTGCGTATGGCAGACGATGCAGCAATTTCCTCACTCATTTGAATTCAACGAACGATTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAGTTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGT ]
consensusID : consensus_10622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 908 fasta sequence
[TATGACGCTATATGACTGGAGTTGGATAACCTGAGGATTTTCGTTATTTCGTGATATCTGCGCTAAATGTCAGCCTATAGCAGTTTACTTTCAGGCCATGCCTATCGTAAACTCCCCGGCGAAGAGAGGGTTGACCATTGCTTGGCTTCTCATGTAACTTATGGTGGTCTAAATCTGCATGGTGTGATAGAGCTAACAAACTTCCAAGTAGTATTTATTGCTTTACCAAACGAAGCTAGTTCTGCTCGTACACCAAAATCATTTCAGGGTTCAGATAGAAAGAGATACATTTTAAAGCTGCCATTGGGAACAATTCGAAGCATTGATCAGAAATCCAATCAGGGAAATATTTCACTTCATATTGTTTGTAAAGATATCCGAGAACTAGTGTTCGTCTTCTCGGACTGTGGGCGAACTGGTGGGTTTTGTGAAAATCTTAAAGCATACGCGTTTCCTGCTATTTCCAAGAAAGCGCTGTTTGCTTATTTATATGGAGCGAAGTGTATTGCGAATAGAGTTTTCGCCAACGATGGTTGGGACGTGTATAATCCAGAAGAGGAATACCACCGCCAGAACATTTTTACTAACGGCTGGAGGATTACAAAAAATTACATGGATTATAGGTTATGTGATACCTACCCAGCTGTTTTAGCTGTTCCATGGGAAGTAACTGATGAACTTCTAGTCGCATGTGCCCCCCATCGCAGCCGGGGCCGGATTCCTGTTTTAAGTGGNTGGCAT-CTGAAAGCAAAGCAAGTCTAACCAGAGCAAGTCAACCTCTTGTTGGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTCAGCTCAGGATAGCAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGGTCAATGCAATAGCTAAT]
[+] EMBL CD187705 [TATGACGCTATATGACTGGAGTTGGATAACCTGAGGATTTTCGATATTTCGTGATATCTGCGCTAAATGTCAGCCTATAGCAGTTTACTTTCACGCCATGCCTATCGTAAACTCCCCGGCGAAGAGAGGGTTGACCATTGCTTGGCTTCTCATGTAACTTATGGTGGTCTAAATCTGCATGGTGCGATAGAGCTAACAAACTTCCAAGTAGTATTTATTGCTTTACCAAACGAAGCTAGTTCTGCTCGTACACCAAAATCATTTCAGGGTTCAGATAGAAAGAGATACATTTT ]
[+] EMBL CD183539 [ ACCTGAGGATTTTCGTTATTTCGTGATATCTGCGCTAAATGTCAGCCTATAGCAGTTTACTTTCAGGCCATGCCTATCGTAAACTCCCCGGCGAAGAGAGGGTTGACCATTGCTTGGCTTCTCATGTAACTTATGGTGGTCTAAATCTGCATGGTGTGATAGAGCTAACAAACTTCCAAGTAGTATTTATTGCTTTACCAAACGAAGCTAGTTCTGCTCGTACACCAAAATCATTTCAGGGTTCAGATAGAAAGAGATACATTTTAAAGCTGCCATTGGGAACAATTCGAAGCATTGATCAGAAATCCAATCAGGGAAATATTTCACTTCATATTGTTTGTAAAGATATCCGAGAACTAGTGTTCGTCTTCTCGGACTGTGGGCGAACTGGTGGGTTTTGTGAAAATCTTAAAGCATACGCGTTTCCTGCTATTTCCAAGAAAGCGCTGTTTGCTTATTTATATGGAGCGAAGTGTATTGCGAATAGAGTTTTCGCCAACGATGGTTGGGACGTGTATAATCCAGAAGAGGAATACCACCGCCAGAACATTTTTACTAACGGCTGGAGGGATACAAAAAATTACATGGATTATAGGGTATGTGATACCTACCCAGCTGTTTTAGCTGNTCCATGGGAAGTAACTGATGAACTTCTAGTCGCATGTGCCCCCCATCGCAGCCGGGGCCGGATTCCTGTTTTAAGTGGNTGGCAT CTGAAAGCA ]
[-] EMBL CD189608 [ GGATNTTCGTTATTTCGTGATATCTGCGCTAAATGTCAGCCTATAGCAGTTTACTTTCAGGCCATGCCTATCGTAAACTCCCCGGCGAAGAGAGGGTTGACCATTGCTTGGCTTCTCATGTAACTTATGGTGGTCTAAATCTGCATGGTGTGATAGAGCTAATAAACTTCCAAGTAGTATTTATTGCTTTACCAAACGAAGCTAGTTCTGCTCGTACATCAAAATCATTTCAGGGTTCAGATAGAAAGAGATACATTTTAAAGCTGCCATTGGGAACAATTCGAAGCATTGATCAGAAATCCAATCAGGGAAATATTTCACTTCATATTGTTTGTAAAGATATCCGAGAACTAGTGTTCGTCTTCTCGGACTGTGGGCGAACTGGTGGGTTTTGTGAAAATCTTAAAGCATACGCGTTTCCTGCTATTTCCAAGAAAGCGCTGTTTGCTTATTTATATGGAGCGAAGTGTATTGCGAATAGAGTTTTCGCCAACGATGGTTGGGACGTGTATAATCCAGAAGAGGA ]
[-] EMBL CD179556 [ GGCTTCTCATGTAACTTATGGTGGTCTAAATCTGCATGGTGTGATAGAGCTAACAAACTTCCAAGTAGTATTTATTGCTTTACCAAACGAAGCTAGTTCTGCTCGTACACCAAAATCATTTCAGGGTTCAGATAGAAAGAGATACATTTTAAAGCTGCCATTGGGAACAATTCGAAGCATTGATCAGAAATCCAATCAGGGAAATATTTCACTTCATATTGTTTGTAAAGATATCCGAGAACTAGTGTTCGTCTTCTCGGACTGTGGGCGAACTGGTGGGTTTTGTGAAAATCTTAAAGCATACGCGTTTCCTGCTATTTCCAAGAAAGCGCTGTTTGCTTATTTATATGGAGCGAAGTGTATTGCGAATAGAGTTTTCGCCAACGATGGTTGGGACGTGTATAATCCAGAAGAGGAATACCACCGCCAGAACATTTTTACTAACGGCTGGAGGATTACAAAAATTAACATGGATTATAGGTTATGTGATACCTACCCAGCTGTTTTAGCTGTTCCATGGGAAGTAACTGATGAACTTCTAGTCGCATGTG ]
[+] EMBL CD165362 [ ctaggctGGGAAATATTTCACTTCATATTGTTTGTAAAGATATCCGAGAACTAGTGTTCGTCTTCTCGGACTGTGGGCGAACTGGTGGGTTTTGTGAAAATCTTAAAGCATACGCGTTTCCTGCTATTTCCAAGAAAGCGCTGTTTGCTTATTTATATGGAGCGAAGTGTATTGCGAATAGAGTTTTCGCCAACGATGGTTGGGACGTGTATAATCCAGAAGAGGAATACCACCGCCAGAACATTTTTACTAACGGCTGGAGGATTAC AAAAATTACATGGATTATAGGTTATGTGATACCTACCCAGCTGTTTTAGCTGTTCCATGGGGAGTAACTGATGAACTTCTAGTCGCATGTG ]
[+] EMBL CD192933 [ AATACCACCGCCAGAACATTTTTACTAACGGCTGGAGGATTACAAAAATTAACATGGATTATAGGTTATGTGATACCTACCCAGCTGTTTTAGCTGTTCCATGGGAAGTAACTGATGAACTTCTAGTCGCATGTGCACCCCATCGCAGCCGGGGCCGGATTCCTGTTTTAAGTTGGTTGCATCCTGAAAGCAAAGCAAGTCTAACCAGAGCAAGTCAACCTCTTGTTGGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTCAGCTCAGGATAGCAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGGTCAATGCAATAGCTAAT]
consensusID : consensus_10622#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 488 fasta sequence
[TAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTTTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTTAATATTGATAATGAAACGATTCAGGGAACTTACAGCTGCCACGCAACGTGAATGTGTTAAACCAACTCTCAACAATGTATCTGATAACTCAACACACAGTAGGTCCCGTTCAAACAGTTGCAAAGATATGAAAATGTACTCTTCAGCAATCAACTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATTTTAAATTGATTTTAATTACTAAAACAAAACTGCTACTAGAAAAAAAAAAAAAAA]
[-] EMBL CD073804 [TAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTTTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTTAATATTGATAATGAAACGATTCAGGGAACTTACAGCTGCCACGCAACGTGAATGTGTTAAACCAACTCTCAACAATGTATCTGATAACTCAACACACAGTAGGTCCCGTTCAAACAGTTGCAAAGATATGAAAATGTACTCTTCAGCAATCAACTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATTTTAAATTGATTTTAATTACTAAAACAAAACTGC ]
[-] EMBL AI394958 [ TTACTCCAACTATCATCAATGTATCTGATAACTCAACACACAGTAGGTCCCGTTCAAACAGTT CAAAGATATGAAAATGTACTCTTCAGCAATCAACTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATTTTAAATTGATTTTAATTACTAATACAAAACTGCTACTAGAAAAAAAAAAAAAAA]
consensusID : consensus_10622#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 412 fasta sequence
[TTTTTTTTTTTTTTTTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATTTTAAATTGATTTTAATTACTAATACAAAACTGCTACTAGAGTAACTTATTTTTTGGTATTTGGTCATCCCAAAAAAATGTGCTACACCGGGCAGCTTGATTGTCTGAAGCGCCTTGTGGGCGTGCACAAACCCAAAACCGCCTGCCGAGTCGACTACCTTTGGTTGTTTTCAACTTTTTCACAGTCCTCATGACGCAAGGTTCTTTGTGGCCAAGACATACAGGAGGTTTCTTCGGCCCTGAAAAAAGA-TT-CGCCATGCTTCAGTTGACTGAGCTGTTTTAGATGGATCGTAAATTTTTCTTTGGAGGGTTTCAGTCGTATTTTCTATACTTGAGGACTGATCATCTATGCATGTAGACG]
[+] EMBL AI395320 [TTTTTTTTTTTTTTTTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATTTTAAATTGATTTTAATTACTAATACAAAACTGCTACTAGAGTAACTTATTTTTTGGTATTTGGTCATCCCAAAAAAATGTGCTACACCGGGCAGCTTGATTGTCTGAAGCGCCTTGTGGGCGTGCACAAACCCAAAACCGCCTGCCGAGTCGACTACCTTTGGTTGTTTTCAACTTTTTCACAGTCCTCATGACGCAAGGTTCTTTGTGGCCAAGACATACAGGAGGTTTCTTCGGCCCTGAAAAAAGA TT CGCCATGCTTCAGTTGACTGAGCTGTTTTAGATGGATCGTAAATTTTTCTTTGGAGGGT ]
[+] EMBL AI395748 [ TTTTTTTTTTTTT TTT TATTATCTTTAATCTCTTTTTTAAATTTTAAATTGATTTTAATTACTAATACAAAACTGCTACTAGAGTAACTTATTTTTTGGTATTTGGTCATCCCAAAAAAATGTGCTACACCGGGCAGCTTGATTGTCTGAATCGCCTTGTGGGCGTGCACAAACCCAAAACCGCCTGCCGAGTCGACTACCTTTGGATGTTTTCAACTTTTTCACAGTCCTCATGACGCAAGGTTCTTTGTGGCCAAGACATACAGGAGGTTTCTTCGGCCCTAAAACAAGACTTCCGCCATGCTTCAGTTGACTGAGCTGTTTTAGATGGATCGTAAATTTTTCTTTGGAGGGTTTCAGTCGTATTTTCTATACTTGAGGACTGATCATCTATGCATGTAGACG]
consensusID : consensus_10622#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[CTCCGGACAACTCAAGTTACATCTTTAGCAATGTTAATGCTAGATCCGTACTACCGTACAATACGCGGATTTGAAGTATTAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACAACGCACAGGTGGACCTACCGATGGTGGAATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACTGGTGGAGGGCGACCATTAAGTTCTGAGGAGCGTTCCCCAATATTTTTACAGGTCATTGATTGCGTATGGGAAACGATGCATCAATTTTCACACTCATTTGAAATCCATATTAAGCCTTATA]
[+] EMBL BG930625 [CTCCGGACAACTCAAGTTACATCTTTAGCAATGTTAATGCTAGATCCGTACTACCGTACAATACGCGGATTTGAAGTATTAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACAACGCACAGGTGGACCTACCGATGGTGGAATTTATTTGCCTCCCAGCTCATCAACTGCTGTTGTTAATGAAACTGGTGGAGGGCGACCATTAAGTTCTGAGGAGCGTTCCCCAATATTTTTACAGGTCATTGATTGCGTATGGGAAACGATGCATCAATTTTCACACTCATTTGAAATCCATATTAAGCCTTATA]
consensusID : consensus_10622#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence
[TTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTTTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGACCCCCCATCCATCA]
[+] EMBL BG930719 [TTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAATTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGGTCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTTTGGACAGCTTACTACATAAGATGGCATCCACTTATGCGTTTACAAGACCCCCCATCCATCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10622#0 CTCCAGGCCAANAATTCGGCACGAGGTGTGCACCCCATCGCAGCCGGGGCCGGATTCCTG 60
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 TTTTAAGTTGGTTGCATCCTGAAAGCAAAGCAAGTCTAACCAGAGCAAGTCAACCTCTTG 120
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 TTGGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTCAGCTCAGGATAG 180
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 CAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGGTCAATGCAATAG 240
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 CTAATATGGGCGTTGGTGGAGGTGTTGAAAGTCCAGCTTATTATGAAAATGTTCAGTATA 300
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 TGTTCTTAAATATACAAAATATACACGCGATGCGGGCTGCATTGACAAAAGTTTTCGAGG 360
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 CCTGTTTTCCATTACCAGACGATACACGATGGTTTAAGCAACTGGCTGACTCTAAATGGC 420
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 TTTATCATATTAAACAAATTATTTTCGCTGCAACCAGTGTAGCCGACAAAATTGAAAATC 480
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 ------------------------------------------------------------
consensus_10622#0 ATAAGACATCTGTGTTAATACATTGTTCAGACGGTTGGGACCGGACAACTCAAGTTACAT 540
consensus_10622#4 --------------------------------------CTCCGGACAACTCAAGTTACAT 22
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------TTTCTCATAACAATAATGGATGAGTTATAT 30
consensus_10622#3 ---------------------------------------TTTTTTTTTTTTTTTTGAAAT 21
consensus_10622#1 ---TATGACGCTATATGACTGGAGTTGGATAACCTGAGGATTTTCGTTATTTCGTGATAT 57
consensus_10622#0 CTTTAGCAATGTTAATGCTAGATC--CGTACTACCGTACAATACGCGGATTTGAA-GTAT 597
consensus_10622#4 CTTTAGCAATGTTAATGCTAGATC--CGTACTACCGTACAATACGCGGATTTGAA-GTAT 79
consensus_10622#2 ----------------------------TAATTCAGAA--ATGCAAGGACGCGACCATGG 30
consensus_10622#5 GCTGCGCGATTCGGAACATTCCTC--TTTAATTCAGAA--ATGCAAGGACGCGACCATGG 86
consensus_10622#3 GTGATATTATCTTTAATCTCTTTT--TTAAATTTTAAATTGATTTTAATTACTAATACAA 79
consensus_10622#1 CTGCGCTAAATGTCAGCCTATAGCAGTTTACTTTCAGGCCATGCCTA-TCGTAAACTCCC 116
* * *
consensus_10622#0 TAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACA-ACGCACAGGTGGACCT 656
consensus_10622#4 TAGTCGAAAAAGAATGGTGTTCGTTTGGTCACAAATTTGCACA-ACGCACAGGTGGACCT 138
consensus_10622#2 TGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCA 90
consensus_10622#5 TGTACGTGAAAGGACTATCTCATTGTGGGCATATATCAATGCAGACATCCAGTTGTATCA 146
consensus_10622#3 AACTGCTACTAGAGTAACTTATTTTTTGGTATTTGGTCATCC---CAAAAAAATGTGCTA 136
consensus_10622#1 CGGCGAAGAGAGGGTTGACCATTGCTTGGCTT---CTCATGTA-ACTTATGGTGGTCTAA 172
** * * * *
consensus_10622#0 A--CCGATGGTGGAATT-TATTTG---CCTCCCAGCT--CATCAACTGCTGTTGTTAATG 708
consensus_10622#4 A--CCGATGGTGGAATT-TATTTG---CCTCCCAGCT--CATCAACTGCTGTTGTTAATG 190
consensus_10622#2 AAACCCACTTTATACTCCTGCTGA---GATCAGTGGT--CATCG--TGTGATTTTTCCTC 143
consensus_10622#5 AAACCCACTTTATACTCCTGCTGA---GATCAGTGGT--CATCG--TGTGATTTTTCCTC 199
consensus_10622#3 CACCGGGCAGCTTGATTGT-CTGA---AGCGCCTTGT--GGGCGTGCACAAACCCAAAAC 190
consensus_10622#1 ATCTGCATGGTGTGATAGAGCTAACAAACTTCCAAGTAGTATTTATTGCTTTACCAAACG 232
* * *
consensus_10622#0 AAACTGGTGGAGGGCGACCATCAAGTCCTGAGGAGCGTTCCC--CAGTATTTTTACAGTT 766
consensus_10622#4 AAACTGGTGGAGGGCGACCATTAAGTTCTGAGGAGCGTTCCC--CAATATTTTTACAGGT 248
consensus_10622#2 AGCATGCATTAGCTCAGC--TTCAATTTTGGACAGCTTACTA--CA-TAAGATGGCA-TC 197
consensus_10622#5 AGCATGCATTAGCTCAGC--TTCAATTTTGGACAGCTTACTA--CA-TAAGATGGCA-TC 253
consensus_10622#3 CGCCTGCCGAGTCGACTACCTTTGGTTGTTTTCAACTTTTT---CACAGTCCTCATGACG 247
consensus_10622#1 AAGCTAGTTCTGCTCGTACACCAAAATCATTTCAGGGTTCAGATAGAAAGAGATACATTT 292
* * *
consensus_10622#0 CATTGATTGCGTATGGCAGACGATGCAGCAATTTCCTCACTCATTTGAATTCAACGAACG 826
consensus_10622#4 CATTGATTGCGTATGGGAAACGATGCATCAATTTTCACACTCATTTGAAATCCAT--ATT 306
consensus_10622#2 CACTTAT-GCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTTAATATTGATAATG 256
consensus_10622#5 CACTTAT-GCGTTTACAAGACCCCCCATC-CATCA------------------------- 286
consensus_10622#3 CAAGGTTCTTTGTGGCCAAGACATACAGGAGGTTTCTTCGGCCCTGAAAAAAGATTCGCC 307
consensus_10622#1 TAAAGCTGCCATTGGGAACAATTCGAAGCATTGATCAGAAATCCAATCAGGGAAAT-ATT 351
* * * *
consensus_10622#0 ATTTCTCATAACAATAATGGATGAGTTATATGCTGCGCGATTCGGAACATTCCTCTTTAA 886
consensus_10622#4 AAGCCTTATA-------------------------------------------------- 316
consensus_10622#2 AAACGATTCAGGGAACTTACAGCTGCCACGCAACGTGAATGTGTTAAACCAACTCTCAAC 316
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ATGCTTCAGTTGACTGAGCTGTTTTAGATGGATCGTAAATTTTTCTTTGGAGGGTTTCAG 367
consensus_10622#1 TCACTTCATATTGTTTGTAAAGATATCCGAGAACTAGTGTTCGTCTTCTCGGACTGTGGG 411
consensus_10622#0 TTCAGAAATGCAAGGACGCGACCATGGTGTACGTGAAAGGACTATCTCATTGTGGGCATA 946
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 AATGTATCTGATAACTCAACACACAGTAGGTCCCGTTCAAACAGTTGCAAAGATATGAAA 376
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 TCGTATTTTCTATACTTGAGGACTGATCATCTATGCATGTAGACG--------------- 412
consensus_10622#1 CGAACTGGTGGGTTTTGTGAAAATCTTAAAGCATACGCGTTTCCTGCTATTTCCAAGAAA 471
consensus_10622#0 TATCAATGCAGACATCCAGTTGTATCAAAACCCACTTTATACTCCTGCTGAGATCAGTGG 1006
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ATGTACTCTTCAGCAATCAACTGAAATGTGATATTATCTTTAATCTCTTTTTTAAATTTT 436
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 GCGCTGTTTGCTTATTTATATGGAGCGAAGTGTATTGCGAATAGAGTTTTCGCCAACGAT 531
consensus_10622#0 TCATCGTGTGATTTTTCCTCAGCATGCATTAGCTCAGCTTCAATTNTGGACAGCTTACTA 1066
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 AAATTGATTTTAATTACTAAAACAAAACTGCTACTAGAAAAAAAAAAAAAAA-------- 488
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 GGTTGGGACGTGTATAATCCAGAAGAGGAATACCACCGCCAGAACATTTTTACTAACGGC 591
consensus_10622#0 CATAAGATGGCATCCACTTATGCGTTTACAAGAGCCCATAGCACGTCGTGAGAGAGCCTT 1126
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 TGGAGGATTACAAAAAATTACATGGATTATAGGTTATGTGATACCTACCCAGCTGTTTTA 651
consensus_10622#0 AATATTGANTATGAAACGATTCAGGGAACTTACAGCTGCCACGCAACGTGAAATGTGTAA 1186
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 GCTGTTCCATGGGAAGTAACTGATGAACTTCTAGTCGCATGTGCCCCCCATCGCAGCCGG 711
consensus_10622#0 AACCACTCTCAACATGTATCTGATNACTCACACACAGTAGGTCCCGTTCAAACAGTCAAG 1246
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 GGCCGGATTCCTGTTTTAAGTGGNTGGCATCTGAAAGCAAAGCAAGTCTAACCAGAGCAA 771
consensus_10622#0 ATATGAAATGTACTCTCAGCATCACTGAATGNGAATATCTTATCTCTTNTAAATTAAATG 1306
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 GTCAACCTCTTGTTGGTGTCCAGGGCCGTCGCAGCTCCGACGACAAAGAACTTGTTCGTC 831
consensus_10622#0 ATTATACTAAATAATACAAAAC-------------------------------------- 1328
consensus_10622#4 ------------------------------------------------------------
consensus_10622#2 ------------------------------------------------------------
consensus_10622#5 ------------------------------------------------------------
consensus_10622#3 ------------------------------------------------------------
consensus_10622#1 AGCTCAGGATAGCAAATGCTAATGCAAATAACCTTTTGATCTTTGATGCTCGTCCACAGG 891
consensus_10622#0 -----------------
consensus_10622#4 -----------------
consensus_10622#2 -----------------
consensus_10622#5 -----------------
consensus_10622#3 -----------------
consensus_10622#1 TCAATGCAATAGCTAAT 908
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||