cluster # 10650

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10650 cluster # 10650 Sequences # 19 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10650#0 length = 592 sequences # 13
consensus_10650#1 length = 409 sequences # 1

consensus_10650#2 length = 388 sequences # 1
consensus_10650#3 length = 298 sequences # 4

consensusID : consensus_10650#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 592
fasta sequence

                              [CTCCAGGCCAANAATTTGGCACGAGGGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG-ATATTTCATTAAAG-CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTTC]

[+] EMBL CD081095             [CTCCAGGCCAANAATTTGGCACGAGGGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATATTTCATTAAAG CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTT ]
[-] EMBL CD074918             [                           ATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATATTTCATTAAAG CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTTC]
[-] EMBL CD177712             [                                                                                                  CAACAGCACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCC                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BG931795             [                                                                                                                                                 gTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGA                                                                                                                                                                                                                    ]
[+] EMBL BG931780             [                                                                                                                                                gtcaatCACAATACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGA                                                                                                                                                                                                                    ]
[+] EMBL CD171522             [                                                                                                                                                        CAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTC                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD193843             [                                                                                                                                                                                                                     CACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCC                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD177788             [                                                                                                                                                                                                                                       ACACTGTCTCNCCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA                                                                             ]
[-] EMBL CD177724             [                                                                                                                                                                                                                                                                          AACTAGAAAATCTCAGCATCCAAACACAACTNCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATCCCTCAAATAAAAACAATTGAATTCTTACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA                                                                             ]
[-] EMBL CD177703             [                                                                                                                                                                                                                                                                                                 ACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA                                                                             ]
[+] EMBL BF440108             [                                                                                                                                                                                                                                                                                                            AGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATATTTCATTAAAG CCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATG    ]
[-] EMBL CD171544             [                                                                                                                                                                                                                                                                                                                                    AAGAAATGTTTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG ATA                                                                             ]
[+] EMBL SMAA14108            [                                                                                                                                                                                                                                                                                                                                                                                         CTTGATTCCTCAAATAAAAACAATTGAATACTCACAAAACGAAAATCTTTTAAAACTTACAACAATTTTGAAGAAAATATTCGAACAACAATCAAGAGTAGAACACAGTTCT CAACGCAAACACCAGCTAATAAGCATATTTCATTAAAGTCCTTATAACT                                                       ]




>consensus_10650#0
CTCCAGGCCAANAATTTGGCACGAGGGATTTTGGTATTTGTATTCGTAGGAATTGTTACA
TTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACT
ACAAATCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGA
AAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCT
CACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAACTCCA
AGCCATACTGATAAAACCGTACAAAAGAAATGTTTAAACAAAATGACACCACAAGATTTG
ATTAGCTTATTATTCAGCTTGATTCCTCAAATAAAAACAATTGAATTCTCACAAAACGAA
AATCTTTTAAAGCTTGCAACAATTTTGGAGAAAATATTCGAACAACAATCAAGAGTAGAA
CACAGTTCTCCAACGAAAACACCAGCTAATAAGATATTTCATTAAAGCCTTATAACTTCA
TGATTCAATATTTTTGTTTACGATAATGCTAATACATACTGAATAATGTTTC

consensusID : consensus_10650#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [ATTCATAGTGATTTTGGTATTTGTATTCAGTAGGAATTGTTACATTTGATAATGTCAAGGTCAAAGAGATCACCAAGAACAACAACACTATTACACACACTACAATCATTATGTAGGAAAGCTGTACTACAACACAACACGGTAACCGACCAAAACAACTGGAAGGTCACGACATACAAACGCAACTGCAGACTACACATACTCACCAAACAACACTGTCACAACACAACACGTAGCCAGCCGAACAACTGGAAATTCACGACTACCCACACCACTACCGGACCTACGATTAAACTGATACCAAGGATTTGATTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATTTCACACAAAGCAGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC]

[+] EMBL AI618814             [ATTCATAGTGATTTTGGTATTTGTATTCAGTAGGAATTGTTACATTTGATAATGTCAAGGTCAAAGAGATCACCAAGAACAACAACACTATTACACACACTACAATCATTATGTAGGAAAGCTGTACTACAACACAACACGGTAACCGACCAAAACAACTGGAAGGTCACGACATACAAACGCAACTGCAGACTACACATACTCACCAAACAACACTGTCACAACACAACACGTAGCCAGCCGAACAACTGGAAATTCACGACTACCCACACCACTACCGGACCTACGATTAAACTGATACCAAGGATTTGATTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATTTCACACAAAGCAGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC]




>consensus_10650#1
ATTCATAGTGATTTTGGTATTTGTATTCAGTAGGAATTGTTACATTTGATAATGTCAAGG
TCAAAGAGATCACCAAGAACAACAACACTATTACACACACTACAATCATTATGTAGGAAA
GCTGTACTACAACACAACACGGTAACCGACCAAAACAACTGGAAGGTCACGACATACAAA
CGCAACTGCAGACTACACATACTCACCAAACAACACTGTCACAACACAACACGTAGCCAG
CCGAACAACTGGAAATTCACGACTACCCACACCACTACCGGACCTACGATTAAACTGATA
CCAAGGATTTGATTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATTTCACAC
AAAGCAGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC

consensusID : consensus_10650#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 388
fasta sequence

                              [CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATACCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATCCAAACACAACTCCAAGCCATACTGATACACCCGTACAAAAGTATTTGATTAGCTTATTACTCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTTTTTAAGCCTTGCAACTAATTTTGGAGAACATATCGCAACACAATCAGAAGTAGATCTCGTCCTCCAACGACAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAATATTTTGTTTACGAAAAGCAATACATACTGATATGTT]

[+] EMBL AI447049             [CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATACCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATCCAAACACAACTCCAAGCCATACTGATACACCCGTACAAAAGTATTTGATTAGCTTATTACTCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTTTTTAAGCCTTGCAACTAATTTTGGAGAACATATCGCAACACAATCAGAAGTAGATCTCGTCCTCCAACGACAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAATATTTTGTTTACGAAAAGCAATACATACTGATATGTT]




>consensus_10650#2
CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATA
CCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATC
CAAACACAACTCCAAGCCATACTGATACACCCGTACAAAAGTATTTGATTAGCTTATTAC
TCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTTTTTAAG
CCTTGCAACTAATTTTGGAGAACATATCGCAACACAATCAGAAGTAGATCTCGTCCTCCA
ACGACAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAATATTTTGTT
TACGAAAAGCAATACATACTGATATGTT

consensusID : consensus_10650#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 298
fasta sequence

                              [ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAACCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGACTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAA]

[-] EMBL CD188354             [ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATTTGTATTCGTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACACACTACAAACCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAA]
[-] EMBL BG931812             [                                                                                                                                                     TCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGAC                                                        ]
[+] EMBL BG931573             [                                                                                                                                                    gTCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGA                                                         ]
[+] EMBL BG931797             [                                                                                                                                                     TCACCACAACACAGTACCAGCAAAAACAACTAGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTGA                                                         ]




>consensus_10650#3
ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATTTGTATTCGTAGGAATTGTT
ACATTTGATAATGTACAAGGTCAAAGAGATCCACCAAGAACCAACAACACTATTACACAC
ACTACAAACCATTATGTAGGAAAGCTGTCTCACCACAACACAGTACCAGCAAAAACAACT
AGAAAGTCTCAGCATACAACCGCAACTGCAAGACATCACAATACCCTCAAAACAACACTG
ACTCACCACAACACAGTACCAGCAAAAACAACTAGAAAATCTCAGCATCCAAACACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10650#1      ----------------------------------ATTCATAGTGATTTTGGTATT-TGTA 25
consensus_10650#3      --------------ACTTCAATAATGTTGAATAGATTCATAGTGATTTTGGTATT-TGTA 45
consensus_10650#0      ----------------CTCCAGGCCAANAATTTGGCACG-AGGGATTTTGGTATT-TGTA 42
consensus_10650#2      CAAACACGGTACCAGCAAACACTAGATGTCCCGCATACAGCGCACTGCAGACATCACATA 60
                                                            *   *   *   *  **    **

consensus_10650#1      TTCAGTAGGAATTGTTACATTTGATAATGT-CAAGGTCAAAG--AGATC-ACCAAGAAC- 80
consensus_10650#3      TTC-GTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAG--AGATCCACCAAGAACC 102
consensus_10650#0      TTC-GTAGGAATTGTTACATTTGATAATGTACAAGGTCAAAG--AGATCCACCAAGAACC 99
consensus_10650#2      CCTCAAACACACTGTCTCACACAACACAGTACCAGCAAAACACTAGAATATCTCAGCATC 120
                             *   * ***  **    * *  ** * **   **    ***    *  ** *  

consensus_10650#1      AACAACACTATTACACACACTACAA-TCATTATGTAGGAAAGCTGTACTACAACACAACA 139
consensus_10650#3      AACAACACTATTACACACACTACAAACCATTATGTAGGAAAGCTGTCTCAC--CACAACA 160
consensus_10650#0      AACAACACTATTACACACACTACAAATCATTATGTAGGAAAGCTGTCTCAC--CACAACA 157
consensus_10650#2      CA-AACACAACTCCAAGCCATACTGATACACCCGTACAAAAG-TATTTGAT----TAGCT 174
                        * ***** * * **  *  ***          ***  **** * *   *      * * 

consensus_10650#1      CGGTAACCGACCAAAACAACTGGAA-GGTCACGAC-ATACAAACGCAACTGCA-GACTAC 196
consensus_10650#3      CAGTA-CCAGCAAAAACAACTAGAA-AGTCTCAGC-ATACAACCGCAACTGCAAGACATC 217
consensus_10650#0      CAGTA-CCAGCAAAAACAACTAGAA-AGTCTCAGC-ATACAACCGCAACTGCAAGACATC 214
consensus_10650#2      TATTACTCAGCTTGCACTCCTCAAATAAAAACAATTGTCTTCTCACAAAACGAATATCTT 234
                          **  *  *    **  **  **      *     *     * ***    *  *    

consensus_10650#1      ACA-TACTCACCAAACAACACTGTCACAACACAACACGTAGCCAGCCGAA-CAACTGGAA 254
consensus_10650#3      ACAATACCCTCAAAACAACACTGACTCACCACAACACAGTACCAGCAAAAACAACTAGAA 277
consensus_10650#0      ACAATACCCTCAAAACAACACTGTCTCACCACAACACAGTACCAGCAAAAACAACTAGAA 274
consensus_10650#2      TTTAAGCCTTGCAACTAATTTTGG-AGAACATATCGCAACACAATCAGAAGTAGATCTCG 293
                             *     **  **   **    * ** * * *    * * *  **  *  *    

consensus_10650#1      ATTCACGACTACCCACACC--ACTACCGGACCTACGATTAAACTGATACCAAGGATTTGA 312
consensus_10650#3      AATCTCAGC-ATCCAAAC---ACAA----------------------------------- 298
consensus_10650#0      AATCTCAGC-ATCCAAACACAACTCCAAGCCATACTGATAAAACCGTACAAAAGAAATGT 333
consensus_10650#2      TCCTCCAACGA--CAACCCCAGCTATTAGCTTTTCACTAAGCCTTATACTCATGATTCAA 351
                            *  * *  **  *    *                                     

consensus_10650#1      TTGACTTTTTTTACGACGTATTACACCATTATAACCTTGATT-------TCACACAAAGC 365
consensus_10650#3      ------------------------------------------------------------
consensus_10650#0      TTAAACAAAATGACACCACAAGATTTGATTAGCTTATTATTCAGCTTGATTCCTCAAATA 393
consensus_10650#2      TATTTTGTTTACGAAAAGCAATACATACTGATATGTT----------------------- 388
                                                                                   

consensus_10650#1      AGATCATTTTAGACGGCACATTTGGGGAAATTTAGCCACACATC---------------- 409
consensus_10650#3      ------------------------------------------------------------
consensus_10650#0      AAAACAATTGAATTCTCACAAAACGAAAATCTTTTAAAGCTTGCAACAATTTTGGAGAAA 453
consensus_10650#2      ------------------------------------------------------------
                                                                                   

consensus_10650#1      ------------------------------------------------------------
consensus_10650#3      ------------------------------------------------------------
consensus_10650#0      ATATTCGAACAACAATCAAGAGTAGAACACAGTTCTCCAACGAAAACACCAGCTAATAAG 513
consensus_10650#2      ------------------------------------------------------------
                                                                                   

consensus_10650#1      ------------------------------------------------------------
consensus_10650#3      ------------------------------------------------------------
consensus_10650#0      ATATTTCATTAAAGCCTTATAACTTCATGATTCAATATTTTTGTTTACGATAATGCTAAT 573
consensus_10650#2      ------------------------------------------------------------
                                                                                   

consensus_10650#1      -------------------
consensus_10650#3      -------------------
consensus_10650#0      ACATACTGAATAATGTTTC 592
consensus_10650#2      -------------------