|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10671#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1793 fasta sequence
[TTTACAACGGTTTGACCTTCAAGTGCTCAGTGACCCCCATCAGTGTACAAAGCGTTGCTGCATCGTTGCCTTGCTTATTCTTTTATCCCTTCAGTACTCTTGTCATGGTAGTGAATGGTGACAGTGACGTAGTGGGAGAAGCTGCTAAGTTTCACAAGCCAGGCGAAAATTATAATTCTCCCGGTTATGTTGTGACTAAAGATACTATGAGGTTATTGAAAGAACACATGAAGCAAACCGATGGTATAGTAGTTACCAGGTTTCCTCCTGAACCAAATGGTATTTTACACATCGGCCACGCAAAAGCAATTAATTTTAACTTTGGTTATGCAAAGAAACATGGTGGCATAACCTACTTGCGATATGATGATACAAACCCTGAGAAGGAAGAGGCAGAGTTTTTCGAAGCTATTGAGGACATGGTTCGATGGCTGGGGTTTACTCCGCACAAAATTACTTATGCCTCGGATAATTTCCAACAGTTATACGAATGGGCAATTGAGTTAATCAAATTGAAGTTAGCTTATGTTTGCCATCAGGCCGTAGAAGAAATACGAGGTTTTAACCCACCACCTTCGCCATGGAGAGACAGACCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGCGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTATTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATCCTAGATCCTTCTGCTTTAGATGCTTGCGTACGGGACTATCTGAATGATCATGCACCACGTGTGATGGCTGTTTTAGAGCCAATAATAGTCACTATTACGAATTGGTGTGAACTATATGGCAATAAATCTTCTGTCGAGCTTACAGTTGCGGATTTTCCTGCCATTCCAGACAGTAAAACCCATAGTGTACTGTTGCAACAGGAGCTGTACATAGAAAGTTCAGATTTTCAAGAAGTTGCTGAGAAAGGATATCGTCGTTTAACCCCTAATCAACCAGTTGGTCTTCGTTACGCGGGCCTTGTTATAGAATTTTTCGATTTAAAAAAAGATTCCAATGGGAAAATATCTCATTTATTTGTGAAAGCCCAGAAGGTAGAGGATTCTACTAAGCCAAAAGCTTTTATACATTGGGTGTCCAATCCTTTGCACTTTGAAGCTCGACTGTATGACCGCTTGTTCACTGTCAAGGAGCCAGAAAACGAAAAGAATGGATTCTTGTCTGTCATTAATAAAAATTCATTAGTCGTAATTCCGGATGCTTTGATTGAACAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTATCGGTTTCTTCTCTGTGGACCCTGATACAAACTCAAAACATATGGTTTTCAATCGAACTGTTGCTCTAAAAGCCGATCCTGGTAAAACGATTTGATATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAGGTCAAACATTATGTATAGTGCTATGTGACTTGTAATACATTTTCTACCTTGGA]
[+] EMBL AF358445 [TTTACAACGGTTTGACCTTCAAGTGCTCAGTGACCCCCATCAGTGTACAAAGCGTTGCTGCATCGTTGCCTTGCTTATTCTTTTATCCCTTCAGTACTCTTGTCATGGTAGTGAATGGTGACAGTGACGTAGTGGGAGAAGCTGCTAAGTTTCACAAGCCAGGCGAAAATTATAATTCTCCCGGTTATGTTGTGACTAAAGATACTATGAGGTTATTGAAAGAACACATGAAGCAAACCGATGGTATAGTAGTTACCAGGTTTCCTCCTGAACCAAATGGTATTTTACACATCGGCCACGCAAAAGCAATTAATTTTAACTTTGGTTATGCAAAGAAACATGGTGGCATAACCTACTTGCGATATGATGATACAAACCCTGAGAAGGAAGAGGCAGAGTTTTTCGAAGCTATTGAGGACATGGTTCGATGGCTGGGGTTTACTCCGCACAAAATTACTTATGCCTCGGATAATTTCCAACAGTTATACGAATGGGCAATTGAGTTAATCAAATTGAAGTTAGCTTATGTTTGCCATCAGGCCGTAGAAGAAATACGAGGTTTTAACCCACCACCTTCGCCATGGAGAGACAGACCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGCGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTATTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATCCTAGATCCTTCTGCTTTAGATGCTTGCGTACGGGACTATCTGAATGATCATGCACCACGTGTGATGGCTGTTTTAGAGCCAATAATAGTCACTATTACGAATTGGTGTGAACTATATGGCAATAAATCTTCTGTCGAGCTTACAGTTGCGGATTTTCCTGCCATTCCAGACAGTAAAACCCATAGTGTACTGTTGCAACAGGAGCTGTACATAGAAAGTTCAGATTTTCAAGAAGTTGCTGAGAAAGGATATCGTCGTTTAACCCCTAATCAACCAGTTGGTCTTCGTTACGCGGGCCTTGTTATAGAATTTTTCGATTTAAAAAAAGATTCCAATGGGAAAATATCTCATTTATTTGTGAAAGCCCAGAAGGTAGAGGATTCTACTAAGCCAAAAGCTTTTATACATTGGGTGTCCAATCCTTTGCACTTTGAAGCTCGACTGTATGACCGCTTGTTCACTGTCAAGGAGCCAGAAAACGAAAAGAATGGATTCTTGTCTGTCATTAATAAAAATTCATTAGTCGTAATTCCGGATGCTTTGATTGAACAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTATCGGTTTCTTCTCTGTGGACCCTGATACAAACTCAAAACATATGGTTTTCAATCGAACTGTTGCTCTAAAAGCCGATCCTGGTAAAACGATTTGATATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAGGTCAAACATTATGTATAGTGCTATGTGACTTGTAATACATTTTCTACCTTGGA]
[+] EMBL CD118297 [ CTCAGTGACCCCCATCAGTGGACAAAGCGTTGCTGCATCGTTGCCTTGCTTATTCTTTTATCCCTTCAGTACTCTTGTCATGTTAGTGAATGGTGACAGTGACGTAGTGGGAGAAGCTGCTAAGTTTCACAAGCCAGGCGAAAATTATAATTCTCCCGGTTATGTTGTGACTAAAGATACTATGAGGTTATTGAAAGAACACATGAAGCAAACCGATGGTA TAGTTACCAGGTTTCCTCCTGAACCAAATGGTATTTTACACATCGGCCACGCAAAAGCAATTAATTTTAACTTTGGTTATGCAAAGAAACATGGTGGCATAACCTACTTGCGAT ]
[-] EMBL CD072977 [ CGATTTAAAAAAAGATTCCAATGGGAAAATATTTCATTTATTTGTGAAAGCCCAGAAGGTAGAGGATTTTACTAAGCCAAAAGCTTTTATACATTGGGTGTCCAATCCTTTGCACTTTGAAGCTCGACTGTATGACCGCTTGTTCACTGTCAAGGAGCCAGAAAACGAAAAGAATGGATTTTTGTCTGTCATTAATAAAAATTCATTAGTCGTAATTCCGGATGCTTTGATTGAACAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTATCGGTTTTTTTTCTGTGGACCCTGATACAAACTCAAAACATATGGTTTTCAATCGAACTGTTGCTTTAAAAGCCGATCCTGGTAAAACGATTTGATATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAGGTCAAACATTATGTATAGTGCTATGTGACTTGTAATACATTTT ]
consensusID : consensus_10671#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 857 fasta sequence
[ATTTCCAACAGTTATACGAATGGGCAATTAAGTTAATCAAATTGAAGTTAGCTTATGTTTGCCATCAGGCCGTAGAAGAAATACGAGGTTTTAACCCACCACCTTCGCCACGGAGAGACAGACCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTATTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATCCTAGATCCTTCTGCTATAGATGCTCGCGCACGGTACTATCTGAATGATCATGCACCACGTGTGATGGCTGTACTACAGCCAATAATAGTCACTAATACGAATTGATGTGAACTATATGGCACTAAAGCTTCTGTCGAGCGTACAGATGCAGACTTNTCCTGCCCTTACTAGACAGTANAACCCATACTGTACTGGTGCAACAGGCAGCGTGACATACAAACTGCATTA]
[-] EMBL CD158648 [ATTTCCAACAGTTATACGAATGGGCAATTAAGTTAATCAAATTGAAGTTAGCTTATGTTTGCCATCAGGCCGTAGAAGAAATACGAGGTTTTAACCCACCACCTTCGCCATGGAGAGACAGACCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAG ]
[+] EMBL CD145087 [ CCACGGAGAGACAGACCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTTG ]
[-] EMBL CD144771 [ CACGGAGAGACAGACCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTGCTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACCAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGCTAGTTACTTTGACAGCACTCCGTgg ]
[+] EMBL CD113175 [ GATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTAC ]
[+] EMBL CD144589 [ GATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACCTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTGATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTGCACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTAC ]
[-] EMBL CD144677 [ ATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAGGTTATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTT ]
[-] EMBL CD144661 [ ATTGAGGAATCCTTGCGATTGTTTGAGGATACGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGTATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGTCCCACGGTTAGTTACTTT ]
[-] EMBL CD113232 [ ATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACCTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCCGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACT ]
[-] EMBL CD144668 [ ATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCCCTAAGTTATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGGGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCAATGTTAATGACTGGGATGTCCCACGGTTAGTTACT ]
[+] EMBL CD190718 [ ATTGGGCGATGGAAAAGTCGATCCAGTAGCTCATCGCATCAAGATGACTCCTCATCATCGTACTGGGACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTGTGTAATTCACTAAATATTTATTGTCCAGCTCAGTGGGAGTATGGCCGCCTCAATCTGCATTATAGTGTGGAGTCAAAGCGCAAAATTATAAAGCTGATAGAAGCCGGCATTGCTAATGACTGGGATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTATTAATATGTCATGTGAACGTATTGGCGTTACTATGGCTCACACAATCCTAGATCCTTCTGCTATAGATGCTCGCGCACGGTACTATCTGAATGATCATGCACCACGTGTGATGGCTGTACTACAGCCAATAATAGTCACTAATACGAATTGATGTGAACTATATGGCACTAAAGCTTCTGTCGAGCGTACAGATGCAGACTTNTCCTGCCCTTACTAGACAGTANAACCCATACTGTACTGGTGCAACAGGCAGCGTGACATACAAACTGCATTA]
[+] EMBL CD078505 [ GCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTATTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATCCTAGATCCTTCTGCTTTAGATGCTTGCGTACGGGACTATCTGAATGATCATGCACCACGTGTGATGGCTGTTTTAGAGCCAATAATAGTCACTATTACGAATTGGTGTGAACTATATGGCAATANATCTTCTGTCGAGCTTACAGTTGCGGA TTTTCCTGCCATT CCAGACAGTAAAAC ]
[+] EMBL CD198140 [ GCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGGATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTATTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATCCTAGATCCTTCTGCT ]
consensusID : consensus_10671#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence
[TATAATTCTCCCGGTTATGTTGTGACTAAGGATACTATGAGGTTATTGAAAGAACACATGAAGCAAACCGATGGTATAGTAGTTACCAGGTTTCCTCCTGAACCAAATGGTATTTTACACATCGGCCACGCAAAAGCAATTAATTTTAACTTTGGTTATGCAAAGGTTAGTCGATACCATTGGGGTCTATTAATTTTAGAAACATGGTGGCATAACCTACTTGCGATATGATGATACAAACCCTGAGAAGGAAGAGGCAGAGTTTTTCGAAGCTATTGAGGACATGGTTCGATGGCTGGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTC]
[+] EMBL CD183837 [TATAATTCTCCCGGTTATGTTGTGACTAAGGATACTATGAGGTTATTGAAAGAACACATGAAGCAAACCGATGGTATAGTAGTTACCAGGTTTCCTCCTGAACCAAATGGTATTTTACACATCGGCCACGCAAAAGCAATTAATTTTAACTTTGGTTATGCAAAGGTTAGTCGATACCATTGGGGTCTATTAATTTTAGAAACATGGTGGCATAACCTACTTGCGATATGATGATACAAACCCTGAGAAGGAAGAGGCAGAGTTTTTCGAAGCTATTGAGGACATGGTTCGATGGCTGGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTC]
consensusID : consensus_10671#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 528 fasta sequence
[CCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAGAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTGGTTGACAGGAGTTTAAATCAAAAACCTATGTAATGCTGAGGCGTTGGGAATCCACCAATTGTAGTCCAATTTCTGCTTGCAAAAATGATGCAACCAACCTCTCACCCTTTCTTGGCTCCAATTTCCTTTTCCAGTGTTTTGGTTTTATTTCCTAATTTTTTAAACCGTAATCGGTTACTACTATCCTCTAACAATTTTCCATGATTATTGTTCAATTATTATTATCTGTTAAGTCGAAAATTACCTCTTATGTTTCTGATCCATAGATTATTTTCGTCCTG]
[+] EMBL CD169281 [CCGATTGAGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTACTTTACGTATGAGAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTGGTTGACAGGAGTTTAAATCAAAAACCTATGTAATGCTGAGGCGTTGGGAATCCACCAATTGTAGTCCAATTTCTGCTTGCAAAAATGATGCAACCAACCTCTCACCCTTTCTTGGCTCCAATTTCCTTTTCCAGTGTTTTGGTTTTATTTCCTAATTTTTTAAACCGTAATCGGTTACTACTATCCTC ]
[+] EMBL CD127744 [ AGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATTTGGTTGACAGGAGTTTAAATCAAAAACCTATGTAATGCTGAGGCGTTGGGAATCCACCAATTGTAGTCCAATTTCTGCTTGCAAAAATGATGCAACCAACCTCTCACCCTTTCTTGGCTCCAATTTCCTTTTCCAGTGTTTTGGTTTTATTTCCTAATTTTTTAAACCGTAATCGGTTACTACTATCCTCTAACAATTTTCCATGATTATTGTTCAATTATTATTATCTGTTAAGTCGAAAATTACCTCTTATGTTTCTGATCCATAGATTATTTTCGTCCTG]
consensusID : consensus_10671#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 349 fasta sequence
[GTTTAACCCCTAATCAACCAGTTGGTCTTCGTTACGCGGGCCTTGTTATAGAATTTTTCGATTTAAAAAAAGTTCACTGTCAAGGAGCCAGAAAACGAAAAGAATGGATTCTTGTCTGTCATTAATAAAGATTCATTAGTCGTAATTCCGGATGCTTTGATTGAACAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTATCGGTTTCTTCTCTGTGGACCCTGATACAAACTCAAAACATATGGTTTTCAATCGAACTGTTGCTCTAAAAGCCGATCCTGGTAAAACGATTTGATATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAG]
[-] EMBL CD136958 [GTTTAACCCCTAATCAACCAGTTGGTCTTCGTTACGCGGGCCTTGTTATAGAATTTTTCGATTTAAAAAAAGTTCACTGTCAAGGAGCCAGAAAACGAAAAGAATGGATTCTTGTCTGTCATTAATAAAGATTCATTAGTCGTAATTCCGGATGCTTTGATTGAACAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTATCGGTTTCTTCTCTGTGGACCCTGATACAAACTCAAAACATATGGTTTTCAATCGAACTGTTGCTCTAAAAGCCGATCCTGGTAAAACGATTTGATATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 TTTACAACGGTTTGACCTTCAAGTGCTCAGTGACCCCCATCAGTGTACAAAGCGTTGCTG 60
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 CATCGTTGCCTTGCTTATTCTTTTATCCCTTCAGTACTCTTGTCATGGTAGTGAATGGTG 120
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 ACAGTGACGTAGTGGGAGAAGCTGCTAAGTTTCACAAGCCAGGCGAAAATTATAATTCTC 180
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 CCGGTTATGTTGTGACTAAAGATACTATGAGGTTATTGAAAGAACACATGAAGCAAACCG 240
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 ATGGTATAGTAGTTACCAGGTTTCCTCCTGAACCAAATGGTATTTTACACATCGGCCACG 300
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 CAAAAGCAATTAATTTTAACTTTGGTTATGCAAAGAAACATGGTGGCATAACCTACTTGC 360
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 GATATGATGATACAAACCCTGAGAAGGAAGAGGCAGAGTTTTTCGAAGCTATTGAGGACA 420
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 TGGTTCGATGGCTGGGGTTTACTCCGCACAAAATTACTTATGCCTCGGATAATTTCCAAC 480
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 AGTTATACGAATGGGCAATTGAGTTAATCAAATTGAAGTTAGCTTATGTTTGCCATCAGG 540
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 CCGTAGAAGAAATACGAGGTTTTAACCCACCACCTTCGCCATGGAGAGACAGACCGATTG 600
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 AGGAATCCTTGCGATTGTTTGAGGATATGAAAAACGGCAAGATTGACGAAGGTATGGCTA 660
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 CTTTACGTATGAAAGTGACATTGGGCGATGGAAAAGTCGATCCAGTAGCTTATCGCATCA 720
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 AGATGACTCCTCATCATCGTACTGGTACTGAATGGCGTCCTGCCTACTATTGGCTTTGTA 780
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 ATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAATCTGTATTATA 840
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 GTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGTTAATGACTGGG 900
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 ATGATCCACGGTTAGTTACTTTGACAGCACTCCGTCGTCGTGGATTTCCACCTCAAGCTA 960
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 TTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATCCTAGATCCTTCTG 1020
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 CTTTAGATGCTTGCGTACGGGACTATCTGAATGATCATGCACCACGTGTGATGGCTGTTT 1080
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 TAGAGCCAATAATAGTCACTATTACGAATTGGTGTGAACTATATGGCAATAAATCTTCTG 1140
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 TCGAGCTTACAGTTGCGGATTTTCCTGCCATTCCAGACAGTAAAACCCATAGTGTACTGT 1200
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------------------------------------------------------
consensus_10671#0 TGCAACAGGAGCTGTACATAGAAAGTTCAGATTTTCAAGAAGTTGCTGAGAAAGGATATC 1260
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 ------------ATTTCCAACAGTTATACGAATGGGCAATTAAGTTAATCAAATTGAAGT 48
consensus_10671#0 GTCGTTTAACCCCTAATCAACCAGTTGGTCTTCGTTACGCGGGCCTTGTTATAGAATTTT 1320
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 TAGCTTATGTTTGCCATCAGGCCGTAGAAGAAATACGAGGTTTTAACCCACCACCTTCGC 108
consensus_10671#0 TCGATTTAAAAAAAGATTCCAATGGGAAAATATCTCATTTATTTGTGAAAGCCCAGAAGG 1380
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ----TATAATTCTCCCGGTTATGTTG-TGACTAAGGATACTATGAGGTTATTGAAAGAAC 55
consensus_10671#3 --------------CCGATTGAGGAA-TCCTTGCGATTGTT-TGAGGATAT-GAAAAACG 43
consensus_10671#1 CACGGAGAGACAGACCGATTGAGGAA-TCCTTGCGATTGTT-TGAGGATAT-GAAAAACG 165
consensus_10671#0 TAGAGGATT--CTACTAAGCCAAAAGCTTTTATACATTGGGTGTCCAATCCTTTGCACTT 1438
consensus_10671#4 -----GTTTAACCCCTAATCAACCAGTTGGTCTTCGTTACGCGGGCCTTGTTATAGAATT 55
* * * *
consensus_10671#2 ACATGA--AGCAAACCGATGG-TATAGTAGTTACCAGGTTTCCTCC---TGAACCAAATG 109
consensus_10671#3 GCAAGATTGACGAAGGTATGGCTACTTTACGTATGAGAGTGACATTGGGCGATGGAAAAG 103
consensus_10671#1 GCAAGATTGACGAAGGTATGGCTACTTTACGTATGAAAGTGACATTGGGCGATGGAAAAG 225
consensus_10671#0 TGAAGCTCGACTGTATGACCGCTTGTTCAC-TGTCAAGGAGCCAGAAAACGAAAAGAATG 1497
consensus_10671#4 T----TTCGATTTAAAAAAAG----TTCAC-TGTCAAGGAGCCAGAAAACGAAAAGAATG 106
* * * * * * ** ** *
consensus_10671#2 GTATTTTACACATCGGCCACGCAAAAGCAATTAATTTTAACT----TTGGTTATGC--AA 163
consensus_10671#3 TCGATCCAGTAGCTTATCGCATCAAGACGACTCCTCATCATC----GTACTGGTACTGAA 159
consensus_10671#1 TCGATCCAGTAGCTTATCGCATCAAGATGACTCCTCATCATC----GTACTGGTACTGAA 281
consensus_10671#0 G-ATTCTTGTCTGTCATTAATAAAAATTCATTAGTCGTAATTCCGGATGCTTTGATTGAA 1556
consensus_10671#4 G-ATTCTTGTCTGTCATTAATAAAGATTCATTAGTCGTAATTCCGGATGCTTTGATTGAA 165
* * * * * * * * * **
consensus_10671#2 AGGTTAGTCGATACCATTGGGGTCTATTAATTTTAGAAACATGGTGGCATAACCTACTTG 223
consensus_10671#3 TGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCAT---------- 209
consensus_10671#1 TGGTGCATTTACCCTACTTATGACTATACTCATTGTTTGTGTGATTCCAT---------- 331
consensus_10671#0 CAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTAT---------- 1606
consensus_10671#4 CAATCTGTCAAAAATGCTGAGGTTTACACTGCCTATCAATTTGAACGTAT---------- 215
* * * * * ** * ** **
consensus_10671#2 CGATATGATGATACAAACCCTGAGAAGGAAGAGGCAG---------------AGTTTTTC 268
consensus_10671#3 CGAGAATATTACACATTCATTATGCACTAAGGAATTT---------------GGTTGACA 254
consensus_10671#1 CGAGAATATTACACATTCATTATGCACTAAGGAATTTCAGTCACGACGTCCTGCCTACTA 391
consensus_10671#0 --------CGGTTTCTTCTCTGTGGACCCTGATACAAA-------------CTCAAAACA 1645
consensus_10671#4 --------CGGTTTCTTCTCTGTGGACCCTGATACAAA-------------CTCAAAACA 254
* * * * *
consensus_10671#2 GAAGCTATTGAGGACA----TGGTTCGATGGCTGGATTGACGAAGGTATGGCTACTTTA- 323
consensus_10671#3 GGAG---TTTAAATCA----AAAACCTATGT---AAT--GCTGAGGCGTTGGGAATCCA- 301
consensus_10671#1 TTGGCTTTGTAATTCACTAAATATTTATTGTCCAGTTCAGTGGGAGTATGGCCGCCTCAA 451
consensus_10671#0 TATGGTTTTCAATCGA----ACTGTTGCTCTAAAAGCCGATCCTGGTAAAACGATTTGA- 1700
consensus_10671#4 TATGGTTTTCAATCGA----ACTGTTGCTCTAAAAGCCGATCCTGGTAAAACGATTTGA- 309
* * * * * * *
consensus_10671#2 --CGTATGAAAGTGACATTGGGCGATGGAAAAGT--CGATCCAGTAGCTTATCGCATC-A 378
consensus_10671#3 --CCAATTGTAGTCCAATTTCTGCTTGCAAAAAT--GATGCAACCAACCTCTCACCCT-T 356
consensus_10671#1 TCTGTATTATAGTGTGGTGTCAAAGCGCAAAATTTTAAAGCTGATAGAAGCCGGCATTGT 511
consensus_10671#0 ----TATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAGGTCAAACATTATGTAT 1756
consensus_10671#4 ----TATTAAGACTGGTTTTCAGGACTATGGTTGCTGATGTTAG---------------- 349
** *
consensus_10671#2 AGATGACTCCTCA--TCATCGTACTGGTACTGAATGGTGCATTTACCCTACTTATGACTA 436
consensus_10671#3 TCTTGGCTCCAAT--TTCCTTTTCCAGTGTTT--TGGTTTTATTTCCTAATTTTTTAA-A 411
consensus_10671#1 TAATGACTGGGATGATCCACGGTTAGTTACTT--TGACAGCACTCCGTCGTCGTGGATTT 569
consensus_10671#0 AGTGCTATGTGACTTGTAATACATTTTCTACCTTGGA----------------------- 1793
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 TACTCATTGTTTGTGTGATTCCATCGAGAATATTACACATTCATTATGCACTAAGGAATT 496
consensus_10671#3 CCGTAATCGGTTACTACTATCCTCTAACAATTTTCCATGATTATTGTTCAATTATTATTA 471
consensus_10671#1 CCACCTCAAGCTATTAATATGTTTTGTGAACGTATTGGCGTTACTATGGCTCAAACAATC 629
consensus_10671#0 ------------------------------------------------------------
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 TCAGTCACGACGTCCTGCCTACTATTGGCTTTGTAATTCACTAAATATTTATTGTCCAGT 556
consensus_10671#3 TCTGTTAAGTCGAAA-ATTACCTCTTATGTTTCTGATCCATAGATTATTT-TCGTCCTG- 528
consensus_10671#1 CTAGATCCTTCTGCT-ATAGATGCTCGCGCACGGTACTATCTGAATGATCATGCACCACG 688
consensus_10671#0 ------------------------------------------------------------
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 TC---------------------------------------------------------- 558
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 TGTGATGGCTGTACTACAGCCAATAATAGTCACTAATACGAATTGATGTGAACTATATGG 748
consensus_10671#0 ------------------------------------------------------------
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 ------------------------------------------------------------
consensus_10671#3 ------------------------------------------------------------
consensus_10671#1 CACTAAAGCTTCTGTCGAGCGTACAGATGCAGACTTNTCCTGCCCTTACTAGACAGTANA 808
consensus_10671#0 ------------------------------------------------------------
consensus_10671#4 ------------------------------------------------------------
consensus_10671#2 -------------------------------------------------
consensus_10671#3 -------------------------------------------------
consensus_10671#1 ACCCATACTGTACTGGTGCAACAGGCAGCGTGACATACAAACTGCATTA 857
consensus_10671#0 -------------------------------------------------
consensus_10671#4 -------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||