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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10694#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 337 fasta sequence
[TCAAAATGAGAAAACACCAACAATG--AGT-GTG-TTA-T--T-A-GTTCCGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAAAACAGCTGACCGTTTAAGAGATACAGGTCGG]
[-] EMBL CD063254 [TCAAAATGAGAAAACACCACCAATG AGT GTG TTA T T A GTT CGAAATGT GACCACA CAAGATGCACATGGTACATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTGTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACA ]
[+] EMBL CD063151 [ aAACAATGTTAGTGGTGTTTA TTAT A GTTCCGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[+] EMBL CD063150 [ AACAATG AGT GTG TTA T TAA GTTCGAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[+] EMBL CD063061 [ AACAATG AGT GTG TTA T T A GTTCCGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGTTGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCG ]
[+] EMBL CD062966 [ ACAATG AGT GTG TTA T T ANGTTCGAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[+] EMBL CD063101 [ ACAATG AGT GTG TTA T T A GATTCGAAATGTGTACCACAGCAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAAAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[+] EMBL CD063043 [ ACAATG AGT GTG TTA T T ANGTT CGAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCG ]
[+] EMBL CD063093 [ CAATG AGT GTG TTANT T A GTTCGAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCG ]
[+] EMBL CD063172 [ CAATG AGT GTG TTA T T ANGTTCCAAAATGTGGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[+] EMBL CD063127 [ T A GTTTCAAAATGGTGACCACAGAAAGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGACACAGCTATTCGG ]
[+] EMBL CD193962 [ GTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGCAAAACAGCTGACCGTTTAAGAGATACAGGTCGG]
consensusID : consensus_10694#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 293 fasta sequence
[ACAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG-TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAGCTATTCGGG]
[+] EMBL CD063211 [ACAATTTGTGTGTTATTAGTTCCAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGGGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATAC ]
[-] EMBL CD063111 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAGCTATTCGGG]
[-] EMBL CD063170 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCCCAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCGTCAGATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGAGCAATTCGGa]
[-] EMBL CD063242 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGA ]
[-] EMBL CD063011 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[-] EMBL CD063166 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCACAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGG ]
[-] EMBL CD063222 [ CAATGAGTGTGTTATTAGTTCGAAATGTGACCCCAGAAGATGCACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATGCA ]
[-] EMBL CD063223 [ ACATGG TAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTATTCGGA ]
[+] EMBL CD063105 [ CATGGCTTTATACATATGTTATGTACCAAACAGGCTAGGTTCAGCACGTGTTTCTACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTATGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGATGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACATCTATTCGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10694#0 TCAAAATGAGAAAACACCAACAATGAGTGTGTTATTAGTTCCGAAATGTGGACCACAGAA 60
consensus_10694#1 -------------------ACAATGAGTGTGTTATTAGTTC-GAAATGTG-ACCACAGAA 39
********************** ******** *********
consensus_10694#0 AGATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTC 120
consensus_10694#1 -GATGCACATGGTAGATACATATGTTATGTAGCAAACAGGCTAGGTTCAGCACGTGTTTC 98
***********************************************************
consensus_10694#0 TACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTA 180
consensus_10694#1 TACAGTAATTCGTGTTCTGTCTGACGGTCCTCATCACGTATCATCCAGTTCCGAAATTTA 158
************************************************************
consensus_10694#0 TGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGA 240
consensus_10694#1 TGATGGGACGATTGAAAATGAAGATAAAAATCATGAGTCATCAAATTCTCAAACTAGTGA 218
************************************************************
consensus_10694#0 TGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTAT 300
consensus_10694#1 TGGTGATGATCTTGTCAAAGAAATAATAGAAAAAGCACGTAAACGTATTGATACAGCTAT 278
************************************************************
consensus_10694#0 TCGGAAAACAGCTGACCGTTTAAGAGATACAGGTCGG 337
consensus_10694#1 TCGGAGCTATTCGGG---------------------- 293
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||