cluster # 1077

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 1077 cluster # 1077 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1077#0 length = 713 sequences # 1

consensus_1077#1 length = 503 sequences # 1

consensusID : consensus_1077#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 713
fasta sequence

                              [AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTAAGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATACCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGAAATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCTAGAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCGAAACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACAGAAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG]

[+] EMBL CD187727             [AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTAAGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATACCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGAAATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCTAGAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCGAAACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACAGAAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG]




>consensus_1077#0
AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTA
AGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATA
CCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGAA
ATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTGC
TTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGT
ATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGG
AAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGA
TGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATG
GCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCTA
GAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCGA
AACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACAG
AAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG

consensusID : consensus_1077#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [CTATTATTTAAAAAGTATTAATTTTCCATACTGAACTAAGCAGGAGGGAATCATCATACAAATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATACCATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCTAATCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAAT]

[+] EMBL CD187737             [CTATTATTTAAAAAGTATTAATTTTCCATACTGAACTAAGCAGGAGGGAATCATCATACAAATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATACCATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCTAATCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTGCTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGGCACTTTATGCCCGAATTGTCAAT]




>consensus_1077#1
CTATTATTTAAAAAGTATTAATTTTCCATACTGAACTAAGCAGGAGGGAATCATCATACA
AATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATACC
ATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCTAA
TCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTGCT
TTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTGTA
TCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAGGA
AAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACGAT
GTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTATGG
CACTTTATGCCCGAATTGTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1077#0      AGATAAAAGAAGACACTTTAAACAAATGCAAATTTAACTTTGAAGGCGTGAACAATTCTA 60
consensus_1077#1      CTATTATTTAAAAAGTATTAATTT--TCCATACTGAACTAAGCAGGAGGGAATCATCATA 58
                        ** *   ** *    ****     * ** * * ****  * *** * ***  **  **

consensus_1077#0      AGTCAGAAAATTTAAACGGTCATTCTACAGATGCCAATAAGGAACTAAATAATGTAAATA 120
consensus_1077#1      CAAATTGATATACTTTCGATTATATTACAGATCCTAATCATGAGCTTATTCATGATAATA 118
                             * **     ** * **  ******* * *** * ** ** * * ***  ****

consensus_1077#0      CCAATGTTCTTTACTTGATTCCAATGGGTTTTATTATACAATGGAGAAAATTTACTCGA- 179
consensus_1077#1      CCATTGTGCACTATTCGAGTCCGATGGCTTATATTATACAATTGAAAAAATTTACTCTCT 178
                      *** *** *  ** * ** *** **** ** *********** ** ***********   

consensus_1077#0      AATCCAACAGCAGATAATTTACCTAGTTCGCTATTATCTGGTTTTAGCTCGGATGGCGTG 239
consensus_1077#1      AATCCTACATTACATAATGTACCTACATCGCTATAATATGATTTTACCTACAATGGCGTG 238
                      ***** ***  * ***** ******  ******* ** ** ***** **   ********

consensus_1077#0      CTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTG 299
consensus_1077#1      CTTTGTGAACATGGTCGAATGCTAAAAACATGGCAAGCTCTTATAAATGAGTCAACATTG 298
                      ************************************************************

consensus_1077#0      TATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAG 359
consensus_1077#1      TATCCCTTGACTTTTTATGAATGGGATGTCTTGTCTCACGCATATCCTCATCATTTGAAG 358
                      ************************************************************

consensus_1077#0      GAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACG 419
consensus_1077#1      GAAAACGAAATACCTTCGGATCATGATGGACCGGAACCAAAAATAACTTTCTATCCAACG 418
                      ************************************************************

consensus_1077#0      ATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTAT 479
consensus_1077#1      ATGTATTTACTTCCACAGAATGATTCTGAACTGAAGTGGAGATTGGAACCATCTTCCTAT 478
                      ************************************************************

consensus_1077#0      GGCACTTTATGCCCGAATTGTCAATCTGAGATAATCTATGATCAGATTTTTAATAACGCT 539
consensus_1077#1      GGCACTTTATGCCCGAATTGTCAAT----------------------------------- 503
                      *************************                                   

consensus_1077#0      AGAATCCGTATACGTCTAGTAACTGGATTTGATGAAGCATTGAGTAGTTGTGTCCAGTCG 599
consensus_1077#1      ------------------------------------------------------------
                                                                                  

consensus_1077#0      AAACTCACCTCCGTTCAGGATTCCTTGAATTGTGTGTCACAGGATTTTCAAGCTGACACA 659
consensus_1077#1      ------------------------------------------------------------
                                                                                  

consensus_1077#0      GAAATTTGTTCTCAACCAACAACTGACGTCATAATTCCGAAACTTCTGATCAGG 713
consensus_1077#1      ------------------------------------------------------