cluster # 10815

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 10815 cluster # 10815 Sequences # 22 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10815#0 length = 1303 sequences # 8
consensus_10815#1 length = 1152 sequences # 10

consensus_10815#2 length = 226 sequences # 3
consensus_10815#3 length = 159 sequences # 1

consensusID : consensus_10815#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1303
fasta sequence

                              [AAACCACATATCAAGCAAAGTCAACTGCTGAATTGAAGGATGAAAGTAAAATAAAAAAGGAACATTCTGAGAATGTTAAGAAAAAAACTCATAATGAAAACCCAACTCACAAGAAACAACCTATTAAATCATCTGACCATTCATATACAAAAGATCAAACTCAATTACCAACATCAAATTTGGAGAATAAACCATCTAGTAGACAAAATTATAAAGAAAACAGAAACAATGAACATTCAATTCATAA-ATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAACATATTGATTCAAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACAAAAAGAAATGAAGAGTCCTCTTTGTCAAATGAACCGAATAGTAATAATAATAATGAGAAGAATACCGGTAAGAATGATAATAAATTGAGTTATTACACAAAAACTAGTGAATATAAAACCGAGAATAAAAATGATGAGCTTATTTCATCAAGTCAACCAACTGTTACTCAAAGCCT-TACATCAGTATCGTTTGTTTCC-GGTAGTAATAAATATGATTCAACTAAGTCAAATGAATATAAAACATCATC-TCAGAGTA-CAGTCAGTAAA-CCTGTATCAGA-GGATGAGATTAAAACTCAAATAGAAAAATTATTAAAGGACAATCTAAACAATCTGATTTTGAAGATTCAGAAAACAAAAGCATATGAAAGTAAGCAATCGTCTTCACCATCATCTGAATCCTCATCAACACAACCAGATCAACTGCCTCCGCCTGTTAAAAAAGATGAAAATTATTACAAATATTATAGGCCTAATCATAAAGAAATGCGGCATAGACCTAACGATGAAGATGATGAAAGAAAACTACATGAACATGATCACCATCATGATAGACATGATGACGAACATAAGCTCCATAAGCCGGAAGAATACAAACCTTGGTCAGATAAGTATGAACTTCGACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGT]

[+] EMBL CD129861             [AAACCACATATCAAGCAAAGTCAACTGCTGAATTGAAGGATGAAAGTAAAATAAAAAAGGAACATTCTGAGAATGTTAAGAAAAAAACTCATAATGAAAACCCAACTCACAAGAAACAACCTATTAAATCATCTGACCATTCATATACAAAAGATCAAACTCAATTACCAACATCAAATTTGGAGAATAAACCATCTAGTACACAAAATTATAAAGAAAACAGAAACAATGAACATTCAATTCATAA ATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAACATATTGATTCCAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACACAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD129937             [AAACCACATATCAAGCAAAGTCAACTGCTGAATTGAAGGATGAAAGTAAAATAAAAAAGGAACATTCTGAGAATGTTAAGAAAAAGACTCATAATGAAAACCCAACTCACAAGAAACAACCTATTAAATCATCTGACCATTCATATACAAAAGATCAAACTCAATTACCAACATCAAATTTGGAGAATAAACCATCTAGTAGACAAAATTATAAAGAAAACAGAAACAATGAACATTCAATTCATAA ATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAACATATTGATTCAAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACAAAAAGAAATGAAGAGTCCTCTTTGTCAAATGAACCGAATAGTAATAATAATAATGAGAAGAATACCGGTAAGAATGATAATAAATTGAGTTATTACACAAAAACTAGTGAATATAAAACCGAGAATAAAAATGATGAGCTTATTTCATCAAGTCAACCAACTGTTACTCAAAGCCT TACATCAGTATCGTTTGTTTCC GGTAGTAATAAATATGATTCAACTAAGTCAAATGAATATAAAACATCATC TCAGAGTA CAGTCAGTANA CCTGTATCAGA GGATGAGATTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BF936630             [                                                                   TGAGAATGTTAAGAAAAAAACTCATAATGAAAACCCAACTCACAAGAAACAACCTATTAAATCATCTGACCATTCATATACAAAAGATCAAACTCAATTACCAACATCAAATTTGGAGAATAAACCATCTAGTAGACAAAATTATAAAGAAAACAGAAACAATGAACATTCAATTCATAA ATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAACATATTGATTCAAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACAAAAAGAAATGAAGAGTCCTCTTTGTCAAATGAACCGAATAGTAATAATAATAATGAGAAGAATACCGGTAAGAATGATAATAAATTGAGTTATTACACAAAAACTAGTGAATATAAAACCGAGAATAAAAATGATGAGCTTATTTCATCAAGTCAACCAACTGTTACTCAAAGCCTCTACATCAGTATCGTTTGTTTCCGGGTAGTAATAAATATGATTCAACTAAGTCAAATGAATATAAAACATCATCTTCAGAGTACCAGTCAGTAAACCCTGTATCAGAGGGATGAGATTAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD126788             [                                                                                                                                                          TCAAACTCAATTACCAACATCAAATTTGGAGAATAAACCATCTAGTAGACAAAATTATAAAGAAAACAGAAACAATGAACATTCAATTCATAA ATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAACATATTGATTCAAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACAAAAAGAAATGAAGAGTCCTCTTTGTCAAATGAACCGAATAGTAATAATAATAATGAGAAGAATA CGGTAAGAATGATAATAAATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD129895             [                                                                                                                                                                 CAATTACCAACATCAAATTTGGAGAATAAACCATCTAGTAGACAAAATTAT AAGAAAACAGAAACAATGAACATTCAATTCATAACATCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD129914             [                                                                                                                                                                                                                                                                                                                                                                                                            AATAAT ATAATGAGAAGAATNCCGGTAAGAATGATAATAAATTGAGTTATTACACAAAAACTAGTGAATATAAAACCGAGAATAANAATGATGAGCTTATTTCATCAAGTCAACCAACTGTTACTCAAAGCCT TACATCAGTATCGTTTGTTTCC GGTAGTAATAAATATGATTCAACTAAGTCAAATGAATATAAAACATCATC TCAGAGTA CAGTCAGTAAA CCTGTATCAGA GGATGAGATTAAAACTCAAATAGAAAAATTATTAAAGGACAATCTAAACAATCTGATTTTGAAGATTCAGAAAACAAAAGCATATGAAAGTAAGCAATCGTCTTCACCATCATCTGAATCCTCATCAACACAACCAGATCAACTGCCTCCGCCTGTTAAAAAAGATGAAAATTATTACAAATATTATAGGCCTAATCATAAAGAAATGCGGCATAGACCTAACGATGAAGATGATGAAAGAAAACTACATGAACATGATCACCATCATGATAGACATGATGACGAACATAAGCTCCATAAGCCGGAAGAATACAAACCTTGGTCAGATAAGTATGAACTTCGACCTTCGACTAAGGACAGACATATACCACCACCCCATCATCATCATCACCA                                                                                                                                                                                                                                                                                       ]
[+] EMBL CD079434             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AATGAATATAAAACATCATC TCAGAGTA CAGTCAGTAAA CCTGTATCAGA GGATGAGATTAAAACTCAAATAGAAAAATTATTAAAGGACAATCTAAACAATCTGATTTTGAAGATTCAGAAAACAAAAGCAGATGAAAGTAAGCAATCGTCTTCACCATCATCTGAATCCTCATCAACACAACCAGATCAACTGCCTCCGCCTGTTAAAAAAGATGAAAATTATTACAAATATTATAGGCCTAATCATAAAGAAATGCGGCATAGACCTAACGATGAAGATGATGAAAGAAAACTACATGAACATGATCACCATCATGATAGACATGATGACGAACATAAGCTCCATAAGCCGGAAGAATACAAACCTTGGTCAGATAAGTATGAACTTCGACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGT]
[-] EMBL CD129878             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TCAACACAGCCAGATCAGCTGCCTCCGCCTGTTAAAAAAGATGAAAATTATTACAAATATTATAGGCCTAATCATAAAGAAATGCGGCATAGACCTAACGATGAAGATGATGAAAGAAAACTACATGAACATGATCACCATCATGATAGACATGATGACGAACATAAGCTCCATAAGCCGGAAGAATACAAACCTTGGTCAGATAAGTATGAACTTCGACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCGTCATCGCCA                                                                                                                                                                                                                                                                                       ]




>consensus_10815#0
AAACCACATATCAAGCAAAGTCAACTGCTGAATTGAAGGATGAAAGTAAAATAAAAAAGG
AACATTCTGAGAATGTTAAGAAAAAAACTCATAATGAAAACCCAACTCACAAGAAACAAC
CTATTAAATCATCTGACCATTCATATACAAAAGATCAAACTCAATTACCAACATCAAATT
TGGAGAATAAACCATCTAGTAGACAAAATTATAAAGAAAACAGAAACAATGAACATTCAA
TTCATAAATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAAC
ATATTGATTCAAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACAAAAAGAA
ATGAAGAGTCCTCTTTGTCAAATGAACCGAATAGTAATAATAATAATGAGAAGAATACCG
GTAAGAATGATAATAAATTGAGTTATTACACAAAAACTAGTGAATATAAAACCGAGAATA
AAAATGATGAGCTTATTTCATCAAGTCAACCAACTGTTACTCAAAGCCTTACATCAGTAT
CGTTTGTTTCCGGTAGTAATAAATATGATTCAACTAAGTCAAATGAATATAAAACATCAT
CTCAGAGTACAGTCAGTAAACCTGTATCAGAGGATGAGATTAAAACTCAAATAGAAAAAT
TATTAAAGGACAATCTAAACAATCTGATTTTGAAGATTCAGAAAACAAAAGCATATGAAA
GTAAGCAATCGTCTTCACCATCATCTGAATCCTCATCAACACAACCAGATCAACTGCCTC
CGCCTGTTAAAAAAGATGAAAATTATTACAAATATTATAGGCCTAATCATAAAGAAATGC
GGCATAGACCTAACGATGAAGATGATGAAAGAAAACTACATGAACATGATCACCATCATG
ATAGACATGATGACGAACATAAGCTCCATAAGCCGGAAGAATACAAACCTTGGTCAGATA
AGTATGAACTTCGACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATCATC
ACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTGAGT
CACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATCATG
AATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCT
CGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCAC
CAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGT

consensusID : consensus_10815#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1152
fasta sequence

                              [GAATTTGNACGAGGAGACACAAACCTTGGTCAGATAAGTATGAACTTCTTACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGTCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACTAAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGAATAATCCACTGTCTTGCATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAATTAGTAATATTTGCTATGACCTAATAATTGAAATTGTTAAACTCAGTACTGCTAGTATTCTTTGTGTTGCTACTTATCAGCAGTATGGAATT-CCTGAATAAAATTCCATATAAGGATTAATTACAATGTGATTCCAACTATTGAGTGGATTCTCAATGTACCAAATATATATATTTATAAAATTTGGGGTCCAAAAAAAAAAAAAAAAAAAAAANNNCCCTGTTGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTGTTGGAAAC-GGAAAGAGAAGCCAGAAGATTACGTTAATGCATTCTAAATAAAAG]

[+] EMBL CD082058             [GAATTTGNACGAGGAGACACAAACCTTGGTCAGATAAGTATGAACTTCTTACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGTCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACTAAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGNCAATGCTTAACATCTTATTATTGAATAATCCACTGTCTTGCATAACGACTTGCTTAGG AATAATTTAACTGATACTCAATTAGTAATATTTGCTATGACCTAATAATTG AATTGTTAANCTCAGTACTGCTAGTATTNCTTGTGGTGCTACTTATCAGCAGTATGGAATTNCCTG AT ANANTNCATATANGGATTANNTAC ATGTGATNCC ACTATTGAGTGGATNCTC ATGTACC AATATATATATT                                                                                                                                                                                                                                                                   ]
[+] EMBL CD078906             [                            GTCAGATAAGTATGAACTTC GACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGTCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACTAAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CD073706             [                                                                                                                                                                                                                                                                                             CATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGTCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACTAAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGAATAATCCACTGTCTTGCATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAATTAGTAATATTTGCTATGACCTAATAATTGAAATTGTTAAACTCAGTACTGCTAGTATTCTTTGTGTTGCTACTTATCAGCAGTATGGAATT CCTGAATAAAATTCCATATAAGGATTAATTACAATGTGATTCCAACTATTGAGTGGATTCTCAATGTACCAAATAAATATATTTATAAAA                                                                                                                                                                                                                                                            ]
[-] EMBL CD075673             [                                                                                                                                                                                                                                                                                                                                CCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGTCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACTAAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGAATAATCCCCTGTCTTGCATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAATTAGTAATATTTGCTATGACCTAATAATTGAAATTGTTAAACTCAGTACTGCTAGTATTCTTTGTGTTGCTACTTATCAGCAGTATGGAATT CCTGAATAAAATTCCATATAAGGATTAATTACAATGTGATTCCAACTATTGAGTGGATTCTCAATGTACCAAATATATATATTTA                                                                                                                                                                                                                                                                 ]
[-] EMBL CD073364             [                                                                                                                                                                                                                                                                                                                                                                                      TACTGTCAATCCTACTCAGCCATTAAATGGGTACGAAGGGGCGACTAAAATCCTGGATTTTGTATCAATCCCACTGACTATCAATATTGATGACTTATTTTTTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTTCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTTTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATTTTATTATTGAATAATCCACTGTTTTGCATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAATTAGTAATATTTGCTATGACCTAATAATTGAAATTGTTAAACTCAGTACTGGTAGTATTTTTTGTGTTGGTACTTATCAGCAGTATGGAATT CCTGAATAAAATTCCATATAAGGATTAATTACAATGTGATTCCAACTATTGAGTGGATTTTCAATGTACCCAATATATATATTTA                                                                                                                                                                                                                                                                 ]
[-] EMBL AI976398             [                                                                                                                                                                                                                                                                                                                                                                                                                              GCGACTAAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGAATAATCCACTGTCTTGCATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAATTAGTAATATTTGCTATGACCTAATAATTGAAATTGTTAAACTCAGTACTGCTAGTATTCTTTGTGTTGCTACTTATCAGCAGTATGGAATT CCTGAATAAAATTCCATATAAGGATTAATTACAATGTGATTCCAACTATTGAGTGGATTCTCAATGTACCAAATATATATATTTA                                                                                                                                                                                                                                                                 ]
[-] EMBL AI976221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGAATAATCCAGTGTCTTGCAAACCGACTTGCTTAGGAAATAATTTAAGTGATACTCAATTAGTAATATTTGGTATGACCTAATAATTGAAATTGTTAAACTCAGAATTGGTAGTATTCTTTGTGTTGGTACTTATCAGCAGTATGGAATT CCTGAATAAAATTCCATATAAGGATTTATTGCAATGTGATTCCAACTATTGAGTGGATTCTCAATGTACCAAATATATATATTTATAAAATTTG                                                                                                                                                                                                                                                        ]
[-] EMBL AW017084             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACAATGTGATTCCAACTATTGAGTGGATTTTCAATGGACCAAATATATATATTTATAAAATTTGGGGTCCAAAAAAAAAAAAAAAAAAAAAANNNCCCTGTTGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTTTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTGTTGGAAAC GGAAAGAGAAGCCAGAAGATTACGTTAATGCATTTTAAATAAAAG]
[+] EMBL AA559782             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            cnagGTCCANACCAAGCTTGCAAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTANAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATNCGTGAAGGCGATATTTTAACCTTGTTGGAAACGGGAAAGAGAACCCAGAANATTACGTTAATNCATTCTAAATAAA  ]
[+] EMBL SM628                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTGTTGGAAAC GGAAAGAGAAGCCAGAAGATTACGTTAATGCATTCTAAATA    ]




>consensus_10815#1
GAATTTGNACGAGGAGACACAAACCTTGGTCAGATAAGTATGAACTTCTTACCTTCAACT
AAGGACAGACATATACCACCACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCA
CCACATCATCCATTCCCATTAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAAT
TCGTTTCCCAAGCAGTATCACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAA
ATTCCATATAGACTTCGTTCTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAA
GATAATGATCGAAATTCTTACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATT
CAATCTGTATCAGCTACTGTCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACT
AAAATCCTGGATTCTGTATCAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGT
GATTGTCCATTCACGCCATGCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAA
ACTACAGGTTGTGCAACTTGTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACC
CAAGGATATGAAGCAGATAAATATGGATGCCCTACATGCAAATGCTTAACATCTTATTAT
TGAATAATCCACTGTCTTGCATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAAT
TAGTAATATTTGCTATGACCTAATAATTGAAATTGTTAAACTCAGTACTGCTAGTATTCT
TTGTGTTGCTACTTATCAGCAGTATGGAATTCCTGAATAAAATTCCATATAAGGATTAAT
TACAATGTGATTCCAACTATTGAGTGGATTCTCAATGTACCAAATATATATATTTATAAA
ATTTGGGGTCCAAAAAAAAAAAAAAAAAAAAAANNNCCCTGTTGTCCAGACCAAGCTTGC
AAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGT
AGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGA
AGGCGATATTTTAACCTTGTTGGAAACGGAAAGAGAAGCCAGAAGATTACGTTAATGCAT
TCTAAATAAAAG

consensusID : consensus_10815#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 226
fasta sequence

                              [TTGGGGAACATGGACAAGGCTGTCGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTGTTGGAAACGGAAAGAGAAGCCAGAAGATTACGTTAATGCATTCTAA]

[+] EMBL CD135046             [TTGGGGAACATGGACAAGGCTGTCGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTGTTGGAAACGGAAAGAGAAGCCAGAAGATTACGTTAATGCATTCTAA]
[+] EMBL CD135054             [          tctACAA GCTGTCGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTGTTGGAAACGGAAAGAGAAGCCAGAAGATTACGTTAATGCATTCTAA]
[+] EMBL AA952771             [                                           GGGTGAAAGCGGTTGTTGGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAA GTCC ATTCt                                                                    ]




>consensus_10815#2
TTGGGGAACATGGACAAGGCTGTCGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTT
GGCAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGATACT
AATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAAGGCGATATTTTAACCTTG
TTGGAAACGGAAAGAGAAGCCAGAAGATTACGTTAATGCATTCTAA

consensusID : consensus_10815#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 159
fasta sequence

                              [TGTTGGCAGAACTGGTTCTCAGGGTCATGTCAAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAGGCGATATTTACCTGTGGAAACGGGAAGAGAGCAGAGATACGTAATGCATCTNAATA]

[+] EMBL SM707                [TGTTGGCAGAACTGGTTCTCAGGGTCATGTCAAGGTCCGTGTAGAGTTTCTGGATGATACTAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAGGCGATATTTACCTGTGGAAACGGGAAGAGAGCAGAGATACGTAATGCATCTNAATA]




>consensus_10815#3
TGTTGGCAGAACTGGTTCTCAGGGTCATGTCAAGGTCCGTGTAGAGTTTCTGGATGATAC
TAATAGGTCAATCATAAGAAACGTGAAAGGTCCTATTCGTGAGGCGATATTTACCTGTGG
AAACGGGAAGAGAGCAGAGATACGTAATGCATCTNAATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      ------------------------------------------------------------
consensus_10815#0      AAACCACATATCAAGCAAAGTCAACTGCTGAATTGAAGGATGAAAGTAAAATAAAAAAGG 60
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      -----------------------------------------GAATTTGNACGAGGAGACA 19
consensus_10815#0      AACATTCTGAGAATGTTAAGAAAAAAACTCATAATGAAAACCCAACTCACAAGAAACAAC 120
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CAAACCTTGGTCAGATAAGTATGAACTTCTTACCTTCAACTAAGGACAGACATATACCAC 79
consensus_10815#0      CTATTAAATCATCTGACCATTCATATACAAAAGATCAAACTCAATTACCAACATCAAATT 180
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CACCTCATCATCATCATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCAT 139
consensus_10815#0      TGGAGAATAAACCATCTAGTAGACAAAATTATAAAGAAAACAGAAACAATGAACATTCAA 240
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      TAGGACCTGAAAGTGAGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATC 199
consensus_10815#0      TTCATAAATCATCCAACTCACATAATTATAAACCACATGAACATAATGAATATAAAAAAC 300
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      ACATGTTTCGATATCATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTT 259
consensus_10815#0      ATATTGATTCAAATAAACAAGAATCAAAAACAGAAGTGAAGGAATATTCAACAAAAAGAA 360
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CTCATGAAGAAGATTTCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTT 319
consensus_10815#0      ATGAAGAGTCCTCTTTGTCAAATGAACCGAATAGTAATAATAATAATGAGAAGAATACCG 420
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      ACCAGTCCAAATCACCACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTG 379
consensus_10815#0      GTAAGAATGATAATAAATTGAGTTATTACACAAAAACTAGTGAATATAAAACCGAGAATA 480
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      TCAATCCTACTCAGCCATTAAATGGCTACGAAGGGGCGACTAAAATCCTGGATTCTGTAT 439
consensus_10815#0      AAAATGATGAGCTTATTTCATCAAGTCAACCAACTGTTACTCAAAGCCTTACATCAGTAT 540
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CAATCCCACTGACTATCAATATTGATGACTTATCTTCTGGTGATTGTCCATTCACGCCAT 499
consensus_10815#0      CGTTTGTTTCCGGTAGTAATAAATATGATTCAACTAAGTCAAATGAATATAAAACATCAT 600
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      GCACAAAAACATGTCCAGGCAGTTTGTATAAACTTAATGAAACTACAGGTTGTGCAACTT 559
consensus_10815#0      CTCAGAGTACAGTCAGTAAACCTGTATCAGAG---GATGAGATTAAAACTCAAATAGAAA 657
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      GTCATTGCTGTTCTAGCGTTACCTGTTACAACCAGTGCACCCAAGGATATGAAGCAGATA 619
consensus_10815#0      AATTATTAAAGGACAATCTAAACAATCTGATTTTGAAGATTCAGAAAACAAAAGCATATG 717
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      AATATGGATGCCCTACATGCAAATGCTTAACATCTTATTATTGAATAATCCACTGTCTTG 679
consensus_10815#0      AAAGTAAGCAATCGTCTTCACCATCATCTGAATCCTCATCAACACAACCAGATCAACTGC 777
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CATAACGACTTGCTTAGGAAATAATTTAACTGATACTCAATTAGTAATATTTGCTATGAC 739
consensus_10815#0      CTCCGCCTGTTAAAAAAGATGAAAATTATTACAAATATTATAGGCCTAATCATAAAGAAA 837
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CTAATAATTGAAATTGTTAAACTCAGTACTGCTAGTATTCTTTGTGTTGCTACTTATCAG 799
consensus_10815#0      TGCGGCATAGACCTAACGATGAAGATGATGAAAGAAAACTACATGAACATGATCACCATC 897
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      CAGTATGGAATTCCTGAATAAAATTCCATATAAGGATTAATTACAATGTGATTCCAACTA 859
consensus_10815#0      ATGATAGACATGATGACGAACATAAGCTCCATAAGCCGGAAGAATACAAACCTTGGTCAG 957
                                                                                   

consensus_10815#2      ------------------------------------------------------------
consensus_10815#3      ------------------------------------------------------------
consensus_10815#1      TTGAGTGGATTCTCAATGTACCAAATATATATATTTATAAAATTTGGGGTCCAAAAAAAA 919
consensus_10815#0      ATAAGTATGAACTTCGACCTTCAACTAAGGACAGACATATACCACCACCTCATCATCATC 1017
                                                                                   

consensus_10815#2      TTGGGGAACATGGACAAGGCTGTCGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTT 60
consensus_10815#3      --------------------------------------------------------TGTT 4
consensus_10815#1      AAAAAAAAAAAAAANNNCCCTGTTGTCCAGACCAAGCTTGCAAGGGTGAAAGCGGTTGTT 979
consensus_10815#0      ATCACCATCCGAATCCTCATTTTCCACCACATCATCCATTCCCATTAGGACCTGAAAGTG 1077
                                                                                ** 

consensus_10815#2      GG---CAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGAT 117
consensus_10815#3      GG---CAGAACTGGTTCTCAGGGTCA---TGTCAAGGTCCGTGTAGAGTTTCTGGATGAT 58
consensus_10815#1      GG---CAGAACTGGTTCTCAGGGTCAATGTACACAGGTCCGTGTAGAGTTTCTGGATGAT 1036
consensus_10815#0      AGTCACAAAATTCGCCATCGAGAAATTCGTTTCCCAAGCAGTATCACATGTTTCGATATC 1137
                        *   ** ** * *   **  *       *        * ** *    * * * ***   

consensus_10815#2      ACTAATAGGTCAATCA----TAAGAAA---CGTGAAAGGTCC-TATTCGTGAAGGCGATA 169
consensus_10815#3      ACTAATAGGTCAATCA----TAAGAAA---CGTGAAAGGTCC-TATTCGTGA-GGCGATA 109
consensus_10815#1      ACTAATAGGTCAATCA----TAAGAAA---CGTGAAAGGTCC-TATTCGTGAAGGCGATA 1088
consensus_10815#0      ATGAATTGGATAAACAAAATCAAGAAATTCCATATAGACTTCGTTCTCATGAAGAAGATT 1197
                       *  *** **  ** **     ******   * *  *   * * *  ** *** *  *** 

consensus_10815#2      TTTT-AACCTTGTTGGAAACGGAAAGAGAAGCCA--GAAGATTACGTTAATGCATTCTAA 226
consensus_10815#3      TTT---ACCTG--TGGAAACGGGAAGAGAG--CA--GAGA--TACGT-AATGCATCTNAA 157
consensus_10815#1      TTTT-AACCTTGTTGGAAACGGAAAGAGAAGCCA--GAAGATTACGTTAATGCATTCTAA 1145
consensus_10815#0      TCTCGAATCGTCATGCTAATGAAGAAGATAATGATCGAAATTCTTACCAGTCCAAATCAC 1257
                       * *   * *    **  ** *   *        *  **          * * **    * 

consensus_10815#2      ----------------------------------------------
consensus_10815#3      TA-------------------------------------------- 159
consensus_10815#1      ATAAAAG--------------------------------------- 1152
consensus_10815#0      CACCAAAAAAGCAACAAAGTATTATTCAATCTGTATCAGCTACTGT 1303