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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10821#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 21 consensus length = 685 fasta sequence
[ATGAAATACTTTTTCCATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA-AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGG-AAAATTAGAATCATTTTTCGAAAGTACCCTAGGAAACATTTAGCACAAGCCTTGGTCAAAAGTGGGTCANAGAACTGTGTTCATTGCGGAGAAATTTATTTATTCAGTGTGAATCTAGTGATACTTAAAGGTGGCTAGCAAGTGCCTCAATTTTTACNAGACTTCTAAATGATGCTCTTTTTCTATGCATTTAAATACTTCTTC]
[+] EMBL CD140309 [ATGAAATACTTTTTCCTAGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTT ]
[+] EMBL CD140239 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAATTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGT ]
[+] EMBL CD140199 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAGCTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTACTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTAT ]
[+] EMBL CD140179 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTAATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGGAAAAGATGCAATGAAACAATTATGT ]
[+] EMBL CD140241 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTCAAG ]
[+] EMBL CD196331 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTAGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTCAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGNAGTATCGA AAGAAGAAAAACTATCCAGAGAANAAGATGCAATGAAGCAATTATGT ]
[+] EMBL CD140218 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTT ]
[+] EMBL CD140244 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGGAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAGTGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATTCCATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGg ]
[+] EMBL CD140308 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCCATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGA ]
[+] EMBL CD140250 [ ATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGT ]
[+] EMBL CD140313 [ ATGGATGTGCGATTCACATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAGACGAACTGTTCGAACTGGTTGGACACGTTACGACATATACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTTATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTACCTAAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGATAAGAAGAAAAACTATCCAGAGAAAATGATGCTATGAAACTGTTGTGT ]
[-] EMBL CD140197 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTATGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ]
[-] EMBL CD140232 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ]
[-] EMBL CD196293 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACNACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ]
[-] EMBL CD140156 [ TGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGCGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ]
[+] EMBL CD188864 [ GATTCAAATGTCCTACGATTTCTCCTTCTCTGTGGGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAGAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAG AAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGA ]
[+] EMBL CD140219 [ atgCGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGGAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTT ]
[-] EMBL CD140161 [ GAACTGGTTGGACACGTTACAACATAAACTCACCTGAAAGTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTACGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGG AAAATTAGAATCATTTTTCGAAAGTACCCTAGG ]
[-] EMBL CD140140 [ CTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTGAACTTATTTCAGAAGAAAACAGGACGGAAATTATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGG AAAATTAGAATCATTTTTCGAAAGTACCCTAGG ]
[-] EMBL CD196315 [ CTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCNCAGCAGATGAACGTGAAAATTTAAACACAAATCGATTAATAAAAATGGCAATTGTGCATGATTTAGCTGAATGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGA AAGAAGAAAAACTATCCAGAGAAAAAGATGCAATGAAACAATTATGTG ]
[+] EMBL AA559653 [ GAAAACACCAGAGGCCGTTATTTGTAAAGATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAACCAGGAAAAATTAGAATCATTTTTCGAAAGTACCCTAGGAAACATTTAGCACAAGCCTTGGTCAAAAGTGGGTCANAGAACTGTGTTCATTGCGGAGAAATTTATTTATTCAGTGTGAATCTAGTGATACTTAAAGGTGGCTAGCAAGTGCCTCAATTTTTACNAGACTTCTAAATGATGCTCTTTTTCTATGCATTTAAATACTTCTTC]
consensusID : consensus_10821#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence
[TAATCATTATAATAAGGAAGTTACCTTCCACAGACCCATAATTTCCGTCCTGTTTTCTTCTGAAATAAGTTCACATAATTGTTTCATTGCATCCTACAAAATAAATTACCAAGGAACTAGGGATACAACACTTACGCATGAAGATGTAATTTCGACTGTTGTAAAGTAGTCAGGAGTACAGCGGACCTAGGTTTAGTGCTAGTTGACATTCGTCAGAGACTTTGAAGAAAATGATGCTCCCTGTGAAATTAGTATCTACGTCCTTTAGCTCTACAGTCAGAAACGTTATCGTCGAACTATTGAGGTCTCGACTAACATCCCATAAGACTGATATATTTATAACTTATTTATTTAAACACATAAACATGGGTAAAAGGAAGCATCAAATATATATGCGCTACACAAATCACTCGACTTGTATGAGAACTGGAATACTGCCCGGG]
[+] EMBL CD132957 [TAATCATTATAATAAGGAAGTTACCTTCCACAGACCCATAATTTCCGTCCTGTTTTCTTCTGAAATAAGTTCACATAATTGTTTCATTGCATCCTACAAAATAAATTACCAAGGAACTAGGGATACAACACTTACGCATGAAGATGTAATTTCGACTGTTGTAAAGTAGTCAGGAGTACAGCGGACCTAGGTTTAGTGCTAGTTGACATTCGTCAGAGACTTTGAAGAAAATGATGCTCCCTGTGAAATTAGTATCTACGTCCTTTAGCTCTACAGTCAGAAACGTTATCGTCGAACTATTGAGGTCTCGACTAACATCCCATAAGACTGATATATTTATAACTTATTTATTTAAACACATAAACATGGGTAAAAGGAAGCATCAAATATATATGCGCTACACAAATCACTCGACTTGTATGAGAACTGGAATACTGCCCGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10821#0 ATGAAATACTTTTTCCATGGATGTGCGATTCAAATGTCCTACGATTTCTCCTTCTCTGTG 60
consensus_10821#1 ------------------------------------------------------------
consensus_10821#0 GGAAACTTAAACGAACTGTTCGAACTGGTTGGACACGTTACAACATAAACTCACCTGAAA 120
consensus_10821#1 ------------------------------------------------------------
consensus_10821#0 GTGTTTCTGATCATATGTACCGGATGGCATTGATGGCTACTGTAATCCCAGCAGATGAAC 180
consensus_10821#1 ------------------------------------------------------------
consensus_10821#0 GTGAAAATTTAAACACAAATCGAT-TAATAAAAATGGCAATTGTGCATGATTTAGCTGAA 239
consensus_10821#1 ----------------TAATCATTATAATAAGGA-AGTTACCTTCCACAGACCCATAATT 43
**** * ****** * * * * **
consensus_10821#0 TGTATCGTGGGTGATATTACACCACATTGTGGAGTATCGAAAGAAGAAAAACTATCCAGA 299
consensus_10821#1 TCCGTCCTGTTTTCTTCTGAAATAAGTT-CACATAATTGTTTCATTGCATCCTA--CAAA 100
* ** ** * * * * * ** * ** * * * *** ** *
consensus_10821#0 GAAAAAGATGCAATGAAACAATTATGTGA-ACTTATTTCAGAAGAAAACAGGACGGAAAT 358
consensus_10821#1 ATAAATTAC-CAAGGAACTAGGGATACAACACTTACGCATGAAGATGTAATTTCGACTGT 159
*** * *** *** * ** * ***** ***** * ** *
consensus_10821#0 TATGGATCTGTGGAAGGAATATGTTGATCAGAAAACACCAGAGGCCGTTATTTGT-AAAG 417
consensus_10821#1 TGTAAAGTAGTCAGGAGTACA-GCGGACCTAGGTTTAGTGCTAGTTGACATTCGTCAGAG 218
* * * ** * * * * ** * * * * *** ** * **
consensus_10821#0 ATTTTGATAAATTTGAGATGCTCTTGCAGGCTTATGAATATGAACATGAAACACTTGAAC 477
consensus_10821#1 ACTTTGAAGAAAATGATGCTCCCTGTGAAATTAGTATCTACGTCCTTTAG-CTCTACAGT 277
* ***** ** *** * ** * * * ** * * * * * ** *
consensus_10821#0 CAGGAAAATTAGAATCATTTTTCGAAAGTACCCTAGGAAACATTTAGCACAAGCCTTGGT 537
consensus_10821#1 CAGAAACGTTATCGTCGAACTATTGAGGT--CTCGACTAACATCC--CATAAGACT---- 329
*** ** *** ** * * ** * ***** ** *** **
consensus_10821#0 CAAAAGTGGGTCANAGAACTGTGTTCATTGCGGAGAAATTTATTTATTCAGTGTGAATCT 597
consensus_10821#1 ----GATATATT-TATAACT-TATTTATT-TAAACACATAAACATGGGTAAAAGGAAGC- 381
* * * **** * ** *** * * ** * * * *** *
consensus_10821#0 AGTGATACTTAAAGGTGGCTAGCAAGTGCCTCAATTTTTACNAGACTTCTAAATGATGCT 657
consensus_10821#1 -ATCAAATATATATGCGCTACACAAATCACTCGACTTGTATGAGAACTG-GAATACTGCC 439
* * * ** * * * *** * *** * ** ** *** * *** ***
consensus_10821#0 CTTTTTCTATGCATTTAAATACTTCTTC 685
consensus_10821#1 CGGG------------------------ 443
*
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||