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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10828#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1459 fasta sequence
[CTTCTTTCCTGCCACTTGACGTCGAATTGTTTTGTAGTTTGGATTCTAAGATTTGTCAT-ATCTTAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGGTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCCTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTGTTCCGTATTCGTATTTCATTTAC-TTGAT-ACAGTGATTATATTATATTCTATATCATCCATAGATTGATTTGTATGTACTAAATGTGNNGA-TATTTTTTTCCTTTTGATTATTTCTGGCAATGTTATAGATGTTTTAANAATANTGATTATTTGAACGAGTATTC-ATGTATCCA-GTGGCCACTTTTCGGGTGAAT-AATTGTTTTTGTTGGCTGAAAATCATTTATTATTGTAATCCAACTAATTGGGTTCTTTGAAGTCCAAATAGTTCCGATTGAATG]
[+] EMBL CD202586 [CTTCTTTCCTGCCACTTGACGTCGAATTGTTTTGTAGTTTGGATTCTAAGATTTGTCATGATCTTAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGGTTGATTCGTGCGGTATATG ]
[+] EMBL CD067464 [ TTTTTCAT TTCGAAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGTTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTT ]
[+] EMBL CD202219 [ ATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTAC ]
[+] EMBL AI067950 [ AACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACA ]
[+] EMBL CD181982 [ AAGGAATTTACTGAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTCACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCA ]
[+] EMBL CD079374 [ gaggCCGAACTAT CAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCCTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTGTTCCGTATTCGTATTTCATTTACTTTGAT ACAGTGATTATATTATATTCTATATCATCCATAGATTGATTTGTATGTACTAAATGTGNNGA TATTTTTTTCCTTTTGATTATTTCTGGCAATGTTATAGATGTTTTAANAATANTGATTATTTGAACGAGTATTC ATGTATCCA GTGGCCACTTTTCGGGTGAAT AATTGTTTTT ]
[-] EMBL CD114689 [ GGATCGTTTGGGGACTTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATCCAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAATAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCAT ]
[-] EMBL CD136901 [ tacCCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCGCAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATNTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCTTATTGTTTTGTTTACTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTATTCGTTGTTCCGTATTCGTATTTCATTTAC TTGATAACAGTGATTATATTATATTCTATATCATCCATAG ]
[-] EMBL BF936115 [ AACATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTTCTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATCCTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGAAGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTGTTCCGTATTCGTATTTCATTTAC TTGATAACAGTGATTATATTATATTCTATATCATCCATAGATTGATTTGTATGTACTAAATGTG TGATTATTTTTTT CTTTTGATTATTTCTGCAAATGTTATAGATGTTTTAAAAATAGTGATTATTTGAACGAGTATTCAATGTATCCAGGTGCACACTTTTCGGGTGTATAAATTGTTTTTGTTGGCTGAAAATCATTTATTATTGTAATCCAACTAATTGGGTTCTTTGAAGTCCAAATAGTTCCGATTGAATG]
consensusID : consensus_10828#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 628 fasta sequence
[TACATCTATTCCAGAGTGTGAATATAAACAGTTTATAAGCTGATTAATTCATCTAGAATTTATTCATTCGATTTCATTACAATCTACTGTACCACCATATTACTAAGATGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGAAGATTAAATTATGAAGAATTTATTGAATTTGTTTCACAATATTTATGAATATAAATATATATAACTTTTTACTTCAGTCCTTACTAATGATCATATTCAACAAGTACATTTTCAGTGAATAACAATGTAGCTATGGA]
[+] EMBL CD169359 [TACATCTATTCCAGAGTGTGAATATAAACAGTTTATAAGCTGATTAATTCATCTAGAATTTATTCATTCGATTTCATTACAATCTACTGTACCACCATATTACTAAGATGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACA ]
[+] EMBL CD136873 [ cccttCATATTACTAAGATGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTCTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG ]
[+] EMBL CD169977 [ TGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAGTGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGCACTATTTCAAAGCAAGAATT AAAAATTATATG AAAGTGATTGTAATTTTATATTT CTATACAAGTTGATCAATGNGTTGATAAATATGATAAAAATAAAGATGGNAG ]
[+] EMBL CD136700 [ TGGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAGAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG ]
[-] EMBL CD137260 [ GGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGA ]
[-] EMBL CD137310 [ GGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGA ]
[-] EMBL CD137207 [ GGCTGTAATGTATGTACTTGAACGAGAATTCGACAGTGTTGATAAAAATTCTGATGGATTTCTAAGTAGGGCTGAAATTATTGGCTGTTTGGAACGTTACGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAGATGGGAAAATATCCAAAAATGAATTCATGAAAGCTACAAATAAGAAACTTTCACAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATGAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGA ]
[-] EMBL CD063091 [ AAACTGATGTATCATGTGCTGCATTAAGAAAAATATTTCGTGAAATGGATAAAAATAAAGATAGAACTATTTCAAAGCAAGAATTAAAAAATTATATGAAAAGTGATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGGAAGATTAAATTATGAAGAATTTATTGAATTTGTTTCACAATATTTATGAATATAAATATATATAACTTTTTACTTCAGTCCTTACTAATGATCATATTCAACAAGTACATTTTCAGTGAATAACAATGTAGCTATGGA]
consensusID : consensus_10828#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 541 fasta sequence
[CCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAATAACAGTAGATGTTCATGCATAGTTTTGAACTCTTAAGTAAAATTAATTTTTCCTGTGTACGTGCTTCTTCTGAATCCAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTA-GTCTGGGTGTATTTGGCGTAAATCCCTGCTACCTTCTTCAAGATTCAACTCCACAGCCTCT]
[-] EMBL CD126595 [CCTTGAATGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAGAAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTGAGTACCAATGTCCTCCAGAACTAAAAGATTGTTCACTGGATGATATTGTAGTTTGGGTGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAATAACAGTAGATGTTCATGCATAGTTTTGAACTCTTAAGTAAAATTAATTTTTCCTGTGTACGTGCTTCTTCTGAATCCAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTA GTCTGGGTGTATTTGGCGTAAATCCCTGCTACCTTCTTCAAGATTCAACTCCACAGCCTCT]
[+] EMBL CD093383 [ GAATTTACTGAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAATAACAGTAGATGTTCATGCATAGTTTTGAACTCTTAAGTAAAATTAATTTTTCCTGTGTACGTGCTTCTTCTGAATCCAGGGCCTTATTGAGTTTGTTACAGTTCTTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACAAAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGACTTGTAGGTCTGGGTGTA ]
consensusID : consensus_10828#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence
[ACCTTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGATCTTCGCGCAGGGGGGTGAGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTATTGCTAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTGCGCGAAATGGATAAAATTAAAGATAGAACTATGTCATAGCAAGAATTAGAAAATTATCTGACAAGTGATTGTAATTTTATATATCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG]
[+] EMBL CD137024 [ACCTTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGATCTTCGCGCAGGGGGGTGAGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTATTTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTATTGCTAAACTGATGTATCATGTGCTGCATTAAGAAAAATATTGCGCGAAATGGATAAAATTAAAGATAGAACTATGTCATAGCAAGAATTAGAAAATTATCTGACAAGTGATTGTAATTTTATATATCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATAAAGATGG]
consensusID : consensus_10828#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence
[TCAAACGGTCATAAAACTGATATGAATAACTATGATGCATTAAAGAAAAGATATCTCTTAAAGAATTTACTGATCGTAAAAATTCTAGTAAAATTATACAATCTGAATCATTCAATACCCATAGTCCAATGGAACAAATTCGTTATTGGCGTTCAGTCGCTGAAATGGCTCAAGCTAATGCAGCAGGCCAATTAGCTAAAACTGAAAAATTAACTCAAGAATTAGCTAGATTACGTTGGGACTTAAGTATATCACATATGGAAAATAATTTATTACGTCAAAATTTAGCATCTGTTCAAGCGGAATTAAATCATATTCGTCAAATTCCCAAAGATATTACAAATTATGCTCAACATAATGAAAGTATGCATCGAGCATTATATCCTTAACTCGTATGATATTTAA]
[+] EMBL CD137241 [TCAAACGGTCATAAAACTGATATGAATAACTATGATGCATTAAAGAAAAGATATCTCTTAAAGAATTTACTGATCGTAAAAATTCTAGTAAAATTATACAATCTGAATCATTCAATACCCATAGTCCAATGGAACAAATTCGTTATTGGCGTTCAGTCGCTGAAATGGCTCAAGCTAATGCAGCAGGCCAATTAGCTAAAACTGAAAAATTAACTCAAGAATTAGCTAGATTACGTTGGGACTTAAGTATATCACATATGGAAAATAATTTATTACGTCAAAATTTAGCATCTGTTCAAGCGGAATTAAATCATATTCGTCAAATTCCCAAAGATATTACAAATTATGCTCAACATAATGAAAGTATGCATCGAGCATTATATCCTTAACTCGTATGATATTTAA]
consensusID : consensus_10828#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[TCCATCTTTATTTTTATCATATTTATCAACCCATTGATCAACTTGTATAGGAAATATAAAATTACAATCACTTTTCATATAATTTTTTAATTCCGCTTGAACAGATGCTAAATTTTGACGTAATAAATTATTTTCCATATGTGATATACTTAAGTCCCAACGTAATCTAGCTAATTCTTGAGTTAATTTTTCAGTTTTAGCTAATTGACCTGCTGCATTAGCTTGAGCCATTTCAGCGACTGAACGCCAATAACGAATTTGTTCCATTGGACTATGGGTATTGAATGATTCAGATTGTATAATTTTACTAGAATTTTTACGATCAGTAAATTCTTTAAGAGATATTCTTTTCTTTAATGCATCATAGTTATTCATATCAGTTTTATGACCGTTTG]
[+] EMBL CD137000 [TCCATCTTTATTTTTATCATATTTATCAACCCATTGATCAACTTGTATAGGAAATATAAAATTACAATCACTTTTCATATAATTTTTTAATTCCGCTTGAACAGATGCTAAATTTTGACGTAATAAATTATTTTCCATATGTGATATACTTAAGTCCCAACGTAATCTAGCTAATTCTTGAGTTAATTTTTCAGTTTTAGCTAATTGACCTGCTGCATTAGCTTGAGCCATTTCAGCGACTGAACGCCAATAACGAATTTGTTCCATTGGACTATGGGTATTGAATGATTCAGATTGTATAATTTTACTAGAATTTTTACGATCAGTAAATTCTTTAAGAGATATTCTTTTCTTTAATGCATCATAGTTATTCATATCAGTTTTATGACCGTTTG]
consensusID : consensus_10828#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 209 fasta sequence
[GAGGGTTGCATGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGTTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGATGAGATCTTCCCAGG]
[+] EMBL CD078006 [GAGGGTTGCATGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGCGGATAAGGCTTGTTGTTTGATTCGTGCGGTATATGATTCCAAAGACTTGGCCATTATAGACAAAGGAGTTGATGATTTGCAATCCAGAGCTGATCGAGATTCTCAGAGGTGCATAGTACAATCCTTGATGAGATCTTCCCAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10828#0 CTTCTTTCCTGCCACTTGACGTCGAATTGTTTTGTAGTTTGGATTCTAAGATTTGTCATA 60
consensus_10828#6 -----------------------------------------------GAGGGTTG-CAT- 11
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------TACATCTATTCCAGAGTGTGAATATAAACA 30
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 TCTTAGAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGC 120
consensus_10828#6 -----GAAATATGCGACCCCCTCTTGTTATGAAAATACTTGCTGCCTCTGTATCTCTAGC 66
consensus_10828#2 ---------------------CCTTGA-ATGAGATCTTCCCAGGTCTTCATGTTATTGGT 38
consensus_10828#1 GTTTATAAGCTGATTAATTCATCTAGAATT-TATTCATTCGATTTCATTACAATCTACTG 89
consensus_10828#3 ----------------ACCTTCATATTATTGTGGTTACCCGATCCCATCGCTCTCTTACT 44
consensus_10828#5 -------------------------TCCATCTTTATTTTTATCATATTTATCAACCCATT 35
consensus_10828#4 ------------------------------------------TCAAACGGTCATAAAACT 18
consensus_10828#0 GGATAAGGCTTGTTGGTTGATTCGTGC-----GGTATATGATTCCA-AAGACTTGGCCAT 174
consensus_10828#6 GGATAAGGCTTGTTGTTTGATTCGTGC-----GGTATATGATTCCA-AAGACTTGGCCAT 120
consensus_10828#2 GAAGAAGG----TGATTTGGATCCTG------GAAATCTACCTCGA-TCCACTGAAT--- 84
consensus_10828#1 TACCACCATATT-ACTAAGATGGCTGT---AATGTATGTACTTGAACGAGAATTCGACAG 145
consensus_10828#3 CATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGATCTTCGCGCAGGGGGGTGAGGT 104
consensus_10828#5 GATCAACTTGTATAGGAAATATAAAAT-----TACAATCACTTTTCATATAATTTTTTAA 90
consensus_10828#4 GATATGAATAACTATGATGCATTAAAG-----AAAAGATATCTCTTAAAGAATTTACTGA 73
*
consensus_10828#0 TATAGACAAAGGAGTTGATGATTTGCAAT-------CCAGAGCTGATCGAGATT-CTCAG 226
consensus_10828#6 TATAGACAAAGGAGTTGATGATTTGCAAT-------CCAGAGCTGATCGAGATT-CTCAG 172
consensus_10828#2 --TAAACTTAGCTGTTCTTGAGTACCAATGTCCT--CCAGAACTAA--AAGATTGTTCAC 138
consensus_10828#1 TGTTGATAAAAATTCTGATGGATTTCTAAGTAGG-GCTGAAATTATTGGCTGTTTGGAAC 204
consensus_10828#3 TAC-----AAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATG--TATTTCCTA- 156
consensus_10828#5 TTCCGCTTGAACAGATGCTAAATTTTGACGTAAT-----AAATTATTTTCCATATGTGAT 145
consensus_10828#4 TCG---TAAAAATTCTAGTAAAATTATACAA-----TCTGAATCATTCAATACCCATAGT 125
* * * *
consensus_10828#0 AGGTGCATAGTACAATCCTTGAA--TGAGATCTTCCCAGGTCTTCATGTTATTGGTGAAG 284
consensus_10828#6 AGGTGCATAGTACAATCCTTGA---TGAGATCTTCCCAGG-------------------- 209
consensus_10828#2 TGGATGATATTGTAGT--TTGGG--TGGA---TCCGCTGGATGGTACAAAGGAATTTACT 191
consensus_10828#1 GTTTCGGTTTTGATAAACGTAAAGCTGAAGAAGTTATCAAACTCTATGATGAAGATAAAG 264
consensus_10828#3 GCCAAGGTACTAAAAAGTGGGATAC--ATGTGCTCCGGAAGCTGTTCTTCGAGCATCTGG 214
consensus_10828#5 ATACTTAAGTCCCAAC--GTAAT--CTAGCTAATTCTTGAGTTAATTTTTCAGTTTTAGC 201
consensus_10828#4 CCAATGGAAC--AAATTCGTTATTGGCGTTCAGTCGCTGAAATGGCTCAAGCTAATGCAG 183
consensus_10828#0 AAGGTGATTTGGATCCTGGAAATCTACCTCGATCCACTGAATTAAACTTAGCTGTTCTTG 344
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 GAAGTATGTTTATTTATTTGGTTTTTATTCATGATATCACGTAAAATACAACCATATAAT 251
consensus_10828#1 ATGGGAAAATATCCAAAAATGAATTCATGAAAGCTA-CAAATAAGAAACTTTCAC-AAAC 322
consensus_10828#3 -TGGGATACTAAC--AGATTTAACTGGACAACCTTA-CAAATACGATCTTATTGCTAAAC 270
consensus_10828#5 TAATTGACCTGCT--GCATTAGCTTGAGCCATTTCAGCGACTGAACGCCAATAACGAATT 259
consensus_10828#4 CAGGCCAATTAGCTAAAACTGAA--AAATTAACTCAAGAATTA--GCTAGATTACGTTGG 239
consensus_10828#0 AGTACCAATGTCCTCCAGAACTAAAAGATT-GTTCACTGGATG--ATATTGTAGTTTGGG 401
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 AACAGTAGATGTTCATGCATAGTTTTGAAC-TCTTAAGTAAAA--TTAATTTTTCCTGTG 308
consensus_10828#1 TGATGTATCATGTGCTGCATTAAGAAAAA--TATTTCGTGAAA--TGGATAAAAATAAAG 378
consensus_10828#3 TGATGTATCATGTGCTGCATTAAGAAAAA--TATTGCGCGAAA--TGGATAAAATTAAAG 326
consensus_10828#5 TGTTCCATTGGACTATGGGTATTGAATGA---TTCAGATTGTA--T-AATTTTACTAGAA 313
consensus_10828#4 GACTTAAGTATATCACATATGGAAAATAATTTATTACGTCAAAATTTAGCATCTGTTCAA 299
consensus_10828#0 TGGATCCGCTGGATGGTACAAAGGAATTTACTGAAGGCCTTATTGAGTTTGTTACAGTTC 461
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 TACGTGCTTCTTCTGA-------------ATCCAGGGCCTTATTGAGTTTGTTACAGTTC 355
consensus_10828#1 ATAGAACTATTTCAAA---------------GCAAGAATTAAAAAATTATATGAAAAGTG 423
consensus_10828#3 ATAGAACTATGTCATA---------------GCAAGAATTAGAAAATTATCTGACAAGTG 371
consensus_10828#5 TTTTTACGATCAGTAAA----------TTCTTTAAGAGATATTCTTTTCTTTAATGCATC 363
consensus_10828#4 GCGGAATTAAATCATAT--------------TCGTCAAATTCCCAAAGATATTACAAATT 345
consensus_10828#0 TTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACA 521
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 TTATCGGGATTTCGCTTGCTGGAAAGCCTGTGGGTGGTGTTATCGCTCAACCTTTTTACA 415
consensus_10828#1 ATTGTAATTTTATATTTCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATA 483
consensus_10828#3 ATTGTAATTTTATATATCCTATACAAGTTGATCAATGGGTTGATAAATATGATAAAAATA 431
consensus_10828#5 ATAGTTAT-TCATATCAGTTTTATGACCGTTTG--------------------------- 395
consensus_10828#4 ATGCTCAA--CATAATGAAAGTATGCATCGAGCATTATATCCTTAACTCGTATGATATTT 403
consensus_10828#0 AAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGAC 581
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 AAGCCAATCCAACTGCGAATACAACTGATCCGAACTATACAACTCGGATCGTTTGGGGAC 475
consensus_10828#1 AAGATGGAAGATTAAATTATGAAGAATTTATTGAATTTGTTTCACAATATTTATGAATAT 543
consensus_10828#3 AAGATGG----------------------------------------------------- 438
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 AA---------------------------------------------------------- 405
consensus_10828#0 TTGTAGGTCTGGGTGTATTTGGCGTAAATCCCCTGCTACCTTCTTCAAAATTGCCATATC 641
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 TTGTAG-TCTGGGTGTATTTGGCGTAAATCCC-TGCTACCTTCTTCAAGATTCAACTCCA 533
consensus_10828#1 AAATATATATAACTTTTTACTTCAGTCCTTACTAATGATCATATTCAACAAGTACATTTT 603
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 CAATCAACCAAAATGCCCAAAAACTTACTTCACCTCATATTATTGTGGTTACCCGATCCC 701
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 CAGCCTCT---------------------------------------------------- 541
consensus_10828#1 CAGTGAATAACAATGTAGCTATGGA----------------------------------- 628
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 ATCGCTCTCTTACTCATGATTTTGTTGACGGAGCATTCTATCCCACTGAAGTTCTTCGCG 761
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 CAGGGGGGTGTGGTTACAAAGTTCTAGTGCTTCTGGAAGGACGTGCTCATGTCTATGTAT 821
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 TTCCTAGCCAAGGTACTAAAAAGTGGGATACATGTGCTCCGGAAGCTGTTCTTCGAGCAT 881
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 CTGGTGGGATACTAACAGATTTAACTGGACAACCTTACAAATACGATCTTAATGCTAAAC 941
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 ATGATAATCTTCGAGGCATACTTGCTACTCCTGTCGCCGATTGGTTACCATCATATGTTT 1001
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 CTTGTTTGCCAAAGGAAGTGCTTGATGATTTCTCAGCTCGTGATTAGCTAATACTAAATC 1061
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 CTATTGTTTTGTTTATTATTATTGACTTTGTTCAATATTAGATGTATAGTACAACATAGA 1121
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 AGTGCTTATCATTCCATACATCTCCCGTGCGTTTATGTGAACATGCTTTTCTCTTCGCTG 1181
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 TTCCGTATTCGTATTTCATTTACTTGATACAGTGATTATATTATATTCTATATCATCCAT 1241
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 AGATTGATTTGTATGTACTAAATGTGNNGATATTTTTTTCCTTTTGATTATTTCTGGCAA 1301
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 TGTTATAGATGTTTTAANAATANTGATTATTTGAACGAGTATTCATGTATCCAGTGGCCA 1361
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 CTTTTCGGGTGAATAATTGTTTTTGTTGGCTGAAAATCATTTATTATTGTAATCCAACTA 1421
consensus_10828#6 ------------------------------------------------------------
consensus_10828#2 ------------------------------------------------------------
consensus_10828#1 ------------------------------------------------------------
consensus_10828#3 ------------------------------------------------------------
consensus_10828#5 ------------------------------------------------------------
consensus_10828#4 ------------------------------------------------------------
consensus_10828#0 ATTGGGTTCTTTGAAGTCCAAATAGTTCCGATTGAATG 1459
consensus_10828#6 --------------------------------------
consensus_10828#2 --------------------------------------
consensus_10828#1 --------------------------------------
consensus_10828#3 --------------------------------------
consensus_10828#5 --------------------------------------
consensus_10828#4 --------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||