cluster # 10859

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Schistosoma mansoni
cluster # 10859 cluster # 10859 Sequences # 23 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10859#0 length = 1321 sequences # 17
consensus_10859#1 length = 628 sequences # 3

consensus_10859#2 length = 401 sequences # 2
consensus_10859#3 length = 222 sequences # 1

consensusID : consensus_10859#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1321
fasta sequence

                              [GGGCCTTCCAAGTTTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAA-GTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT-AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC-AAATCCGTTTAC-TACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAA-GGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATATTTCACTTGACTCCTTCATATCTCTCCATTTTTGCGATATATATATACACCAGATTCAGAATATAACAAAATCCCCTTGTCTAACACTGGTTACACATTCCTATTTTATAATAGATATTTCTGTAGCTAGAAAAACAAATTTTTTTTTCACCAAACTATTTCAGAATAATTGTTTCGATTTTTTTTATAAAATGTTGCCTGTAATTTGAATTATCAATAGATGCAT]

[+] EMBL CD113463             [GGGCCTTCCAAGTTTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAACCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCCATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAA GTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGACCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD113391             [GGGCCTTCCAAGTTTGGCGGAGTGGACACCATCTGATGGACTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGTACGATAAACAAAATATTGCTGTATGCAGTGAGCCGAAATCATAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCGAATATTTTAAAAGACCAGTACCTTCTAAATTTACTCAA GTCATCAAAAGATGGATGGGTGGATCTCTCAATAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCCTCAACTAAAATTGAGGTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD151852             [GGGCCTTCCAAGTTTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTACTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAA GTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD185755             [                 CGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTACTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAA GTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATCATAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BG932702             [                                                                                                                                                                       GACGCAAATATTGTAAAAGATCAATACCTTCTAAATTTAGTCAATGTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTTAAAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAAATCCGTTTAC TACCGTACCATCATATTGTCGGAATTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL BG932649             [                                                                                                                                                                        ACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAA GTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL BG932728             [                                                                                                                                                                        ACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAA GTCATCAAAAGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD151790             [                                                                                                                                                                                                                             AGATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAATAACTCCAGTCTTCGACGACGGATGTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTATAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACATGGGAC AAATCCGTTTAC TACCGAACCATCATATTGTCGGAATTCCCAGAGAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTATAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATGTGATATTAAACGTTCACAAATACTACATAGTCAACTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CD163821             [                                                                                                                                                                                                                               ATGGATGGGTGGATCTCTCAGTAATTGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCG TTACTTACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAgtcg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD068350             [                                                                                                                                                                                                                                gtGAT GGTGGATCTCTCAGTAA TGCAAGTTTT AAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL CD157324             [                                                                                                                                                                                                                                                                                                                                        GAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGAC AAATCCGTTTAC TACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CD078606             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAA GGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGTAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAGAAAAC ACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATAT                                                                                                                                                                                                                                 ]
[+] EMBL AI977411             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAA GGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGATTAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATATTTCACTTGACTCCTTCATATCTCTCCATTTTTGCGATATATATATACACCAGATTCAGAATATAACATAATCCCCT                                                                                                                                                     ]
[+] EMBL CD178706             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAA GGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATATT                                                                                                                                                                                                                                ]
[+] EMBL CD178695             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAA GGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAG AAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATATT                                                                                                                                                                                                                                ]
[+] EMBL CD083470             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CGAACATAAGACTGTCCCCAATACCACCAATCCCAAGGGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATNATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATATTTCACTTGACTCCTTCATATCTCTCCATTTTTGCGATATATATATACACCAGATTCAGAATATAACAAAA                                                                                                                                                           ]
[-] EMBL CD073070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTGTTTTAGTAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTTAGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCTTCATGATCATCTATATTTCACTTGACTCCTTCATATCTCTCCATTTTTGCGATATATATATACACCAGATTCAGAATATAACAAAATCCCCTTGTCTAACACTGGTTACACATTCCTATTTTATAATAGATATTTCTGTAGCTAGAAAAACAAATTTTTTTTTCACCAAACTATTTCAGAATAATTGTTTCGATTTTTTTTATAAAATGTTGCCTGTAATTTGAATTATCAATAGATGCAT]




>consensus_10859#0
GGGCCTTCCAAGTTTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTT
CTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAG
AGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTT
TAAAAGACCAGTACCTTCTAAATTTAGTCAAGTCATCAAAAGATGGATGGGTGGATCTCT
CAGTAATTGCAAGTTTTAAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTC
AGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCG
TTGATCCTTTGCCCACTTGGGACAAATCCGTTTACTACCGTACCATCATATTGTCGGAAT
TCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCC
ATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAAC
GTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTA
ATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATG
CATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTG
TCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGATCCCATTCGCAAAA
CATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAG
AGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTAC
TCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAGAAGCCG
AACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCGCCTCTT
AGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATGCATCCT
TCATGATCATCTATATTTCACTTGACTCCTTCATATCTCTCCATTTTTGCGATATATATA
TACACCAGATTCAGAATATAACAAAATCCCCTTGTCTAACACTGGTTACACATTCCTATT
TTATAATAGATATTTCTGTAGCTAGAAAAACAAATTTTTTTTTCACCAAACTATTTCAGA
ATAATTGTTTCGATTTTTTTTATAAAATGTTGCCTGTAATTTGAATTATCAATAGATGCA
T

consensusID : consensus_10859#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 628
fasta sequence

                              [TTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAAGTCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTT-GTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGATCC-CATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGA]

[+] EMBL AI067169             [TTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAAGTCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGGTGTCATGGCAATAAAAAACTAATTAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAAGGA                                                                                                                                                                          ]
[+] EMBL AI068212             [      GAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAATTTAGTCAAGTCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTT GTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGATCC CATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTGAGTTACTCCGGCTACAGCGA]
[+] EMBL BG930409             [                                                                                                                                                                                                                                                                                                                               CCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTT GTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGACCCTCAATCcat                                                                                                                                         ]




>consensus_10859#1
TTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGT
GCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAGAGCTTATGAATGA
AAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTA
CCTTCTAAATTTAGTCAAGTCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACC
ATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGT
TGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTG
GGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACC
CGAACATAAGACTGTCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGA
TCCCATTCGCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGT
GTCTCACGTACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGG
TTGGCGTGAGTTACTCCGGCTACAGCGA

consensusID : consensus_10859#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 401
fasta sequence

                              [ATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAATCCGTTTACTACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAGACCGGGCCGGCCCAATCACTAGGA]

[-] EMBL CD200887             [ATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAATCCGTTTACTACCGTACCATCATATTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAACATAAGACTGTCCCCAGACCGGGCCGGCCCAATCACTAGGA]
[-] EMBL BG930156             [                                                                                   AAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCGCGATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCTTAAACGTTCACAAATACAACATAGTCAACTCGGTGTCAAAATCTGTa                                                                                                                                                                         ]




>consensus_10859#2
ATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAATCCGTTTACTACCGTACCATCATA
TTGTCGGAATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACG
ATGAATGGCCATCCTCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCT
GATCTTAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTT
GAATTCCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGG
AAAATCTATGCATACCTTTTGTGTCATGGCAATAAAAAACTAAATAAAAACCAACCCGAA
CATAAGACTGTCCCCAGACCGGGCCGGCCCAATCACTAGGA

consensusID : consensus_10859#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 222
fasta sequence

                              [TTTAAGATCAGATGGTATCTTGCGGTTTGGAAACAGAACACGCACTAAAGATGGAGGATGGGTGGATCTCTCAGTAATTGCAAGTTTTAAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAATCCGT]

[-] EMBL CD114595             [TTTAAGATCAGATGGTATCTTGCGGTTTGGAAACAGAACACGCACTAAAGATGGAGGATGGGTGGATCTCTCAGTAATTGCAAGTTTTAAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAATCCGT]




>consensus_10859#3
TTTAAGATCAGATGGTATCTTGCGGTTTGGAAACAGAACACGCACTAAAGATGGAGGATG
GGTGGATCTCTCAGTAATTGCAAGTTTTAAAAAACTCCAGTCTTTGACGACGGATCTAAG
CGTTATTCGTCAGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATAC
AATTCGACGCGTTGATCCTTTGCCCACTTGGGACAAATCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      GGGCCTTCCAAGTTTGGCGGAGTGGACACCATCTGATGGAGTTGGGTCCCAGTGGGTTTT 60
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      CTGATTGTCCGGTGCTGCAGGATAAAGAAAATATTGCTGTATGCAGTGAGCCGAAATCAG 120
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      AGCTTATGAATGAAAAGATTATCAAACAATGTGAATTCTATTTCTCGGACGCAAATATTT 180
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      TAAAAGACCAGTACCTTCTAAATTTAGTCAAGTCATCAAAAGATGGATGGGTGGATCTCT 240
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ----------------------------------------------TTGGCGGAGTGGAC 14
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      CAGTAATTGCAAGTTTTAAAAAACTCCAGTCTTTGACGACGGATCTAAGCGTTATTCGTC 300
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ACCATCTGATGGAGTTGGGTCCCAGTGGGTTTTCTGATTGTCCGGTGCTGCAGGATAAAG 74
consensus_10859#2      -----------------------------------------------------ATTCGAC 7
consensus_10859#0      AGTCATTGACAGCATCAACTAAAATTGAGGTGTCAGAAGAT--GGGAATACA-ATTCGAC 357
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      AAAATATTGCTGTATGCAGTGAGCCGAAATCAGA--GCTTATGAATGAAAAGATTATCAA 132
consensus_10859#2      GCGTTGATCCTTTGCCCACTTGGGACAAATCCGTTTACTACCGTACCATCATATTGTCGG 67
consensus_10859#0      GCGTTGATCCTTTGCCCACTTGGGACAAATCCGTTTACTACCGTACCATCATATTGTCGG 417
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      A---CAATGTGAATTCTATTTCTCGGACGCAAATATTTTAAAAGACCAGTACCTTCTAAA 189
consensus_10859#2      AATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATG 127
consensus_10859#0      AATTCCCAGAAAATTCAAACGTCACAGTGGAAAGTATTCAGGAGTTCTTCACGATGAATG 477
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      TTTAGTCAAGTCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCT 249
consensus_10859#2      GCCATCC--TCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCT 185
consensus_10859#0      GCCATCC--TCCATCTTTAGTGCGTGTTCTGTTTCCAAACCGCAAGATACCATCTGATCT 535
consensus_10859#3      --------------------------------TTTAAGATCAGATGGTATCTTGCGGTTT 28
                                                       **  * * *  * * ** * *  * * *

consensus_10859#1      TAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATT 309
consensus_10859#2      TAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATT 245
consensus_10859#0      TAAACGTTCACAAATACTACATAGTCAACTCGGTGTCAAAATCTGTGCTGTTGTTGAATT 595
consensus_10859#3      GGAAACAGAACACGCACTAAAGATGGAG---GATGGGTGGATCTCT-CAGTAATTGCAAG 84
                         **     ***   **** * *   *    * **     **** * * **  *** *  

consensus_10859#1      CCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAAT 369
consensus_10859#2      CCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAAT 305
consensus_10859#0      CCCTAATCGACCTGATGCATTAAAAGCAATTAATTTATCTCGCTCTCACTGGGGGAAAAT 655
consensus_10859#3      TTTTAAAAAACTCCAGTCTTTGACGACGG-------ATCTAAGCGTTATTCGTCAGTCAT 137
                          ***   **   *  * ** *   *         ****     * * * *      **

consensus_10859#1      CTATGCATACCTTTTGTGTCATGGCAATAAAAAACTA-AATAAAAACCAACCCGAACATA 428
consensus_10859#2      CTATGCATACCTTTTGTGTCATGGCAATAAAAAACTA-AATAAAAACCAACCCGAACATA 364
consensus_10859#0      CTATGCATACCTTTTGTGTCATGGCAATAAAAAACTA-AATAAAAACCAACCCGAACATA 714
consensus_10859#3      TGACAGCATCAACTAAAATTGAGGTGTCAGAAGATGGGAATACAATTCGACGCGT---TG 194
                         *      *   *    *   **    * ** *    **** **  * ** **    * 

consensus_10859#1      AGACTGTCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGATCCCATTC 488
consensus_10859#2      AGACTGTCCCCAGACCGGGCCGGCCCAATCACTAGGA----------------------- 401
consensus_10859#0      AGACTGTCCCCAATACCACCAATCCCAAGGATGTTGCTGATGATAAAGTTGATCCCATTC 774
consensus_10859#3      ATCCTTTGCCCACTTGGGACAAATCCGT-------------------------------- 222
                       *  ** * ****       *    **                                  

consensus_10859#1      GCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACG 548
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      GCAAAACATTTCTACGTCGTCTGGATTGTTTTAGCAACAATAGTATTCATGTGTCTCACG 834
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      TACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTG 608
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      TACGAGAGCCAATAGGTCCACCAACTGAAGAAAGTACTGGTTTTTCTCCTGGTTGGCGTG 894
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      AGTTACTCCGGCTACAGCGA---------------------------------------- 628
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      AGTTACTCCGGCTACAGCGAATGCTGATTCGCGACGGAGCTAAAGTGAATAAGTCTTCAG 954
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      AAGCCGAACTTCAGCCATTAGATAATGCAATTGTTTGTATAGATTCCGGTGCAGTTTGCG 1014
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      CCTCTTAGAAAACAACCAGTCACATATAACAGAAGTATGTCAATCTTTCGGTGATAAATG 1074
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      CATCCTTCATGATCATCTATATTTCACTTGACTCCTTCATATCTCTCCATTTTTGCGATA 1134
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      TATATATACACCAGATTCAGAATATAACAAAATCCCCTTGTCTAACACTGGTTACACATT 1194
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      CCTATTTTATAATAGATATTTCTGTAGCTAGAAAAACAAATTTTTTTTTCACCAAACTAT 1254
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      ------------------------------------------------------------
consensus_10859#2      ------------------------------------------------------------
consensus_10859#0      TTCAGAATAATTGTTTCGATTTTTTTTATAAAATGTTGCCTGTAATTTGAATTATCAATA 1314
consensus_10859#3      ------------------------------------------------------------
                                                                                   

consensus_10859#1      -------
consensus_10859#2      -------
consensus_10859#0      GATGCAT 1321
consensus_10859#3      -------