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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 828 fasta sequence
[TAGGAATATGAATATACATATAATATAGTTACTTAGCAGTTGTTTAATAAGAATACATGTATAATAACAGGAGCTGTTATAGGCTTGTGAAAAGCTTAGACCATTAGAAAACCCAAATCTTTGTTGTTTCAGTGTTAAATCTGTTCTGACAAATTTTCATTGGTATGTGCTTTCTGAGCTAATTGCCTCAACGGTACTTATGGTTTGGATTACTTTTTATGGTTAGGATTTTCTTTTAGCGAGTTAGTTTTGTACGGGATGGGGTCACTAACCACATGCCCAACCCTCCTCTTGTATCCGGGCTTGGGACCGGCAGTAGCCTCTGGAGGAGCTCCAGGCGGAGTTAATTGCCTCAACAGTGCAGACTAAATATGTTTGAACTGTGATCATCAGTGGGATCTAGGAATCATATTCTACCTTTAACTTCGAAAGCCAACCCTGTCTTATCTAGTAACTAAGTCTAAATATATATTTTGATATTACAGACAATAAATAGTAACGCATGACAGTTATTAACTGATCAATGACATATCTTGAGCAATAACTTGATAAATATATAATTTTCAGATTATATTGCACACTGATCTTAGCTAAATAACCATTGAAAATCAGAAAGCACTGGACACTTACTTCGTCTTATAATGAGACCTCTCAGAAGTGAGAACTCACAATCAATCCAAGGATTGAACCCAGGACATTTAAGTCTCAATACTAGAGTTTAACC-TTTAGATAACTGAATCAGCATCTATTGATGTATAATTTTCTCTGTAAATCTCTCTGAAGTATTACCCGAT-TTGTACTTTAACATGAAAT-C-ATAGATGATATTGA]
[+] EMBL CD080623 [TAGGAATATGAATATACATATAATATAGTTACTTAGCAGTTGTTTAATAAGAATACATGTATAATAACAGGAGCTGTTATAGGCTTGTGAAAAGCTTAGACCATTAGAAAACCCAAATCTTTGTTGTTTCAGTGTTAAATCTGTTCTGACAAATTTTCATTGGTATGTGCTTTCTGAGCTAATTGCCTCAACGGTACTTATGGTTTGGATTACTTTTTATGGTTAGGATTTTCTTTTAGCGAGTTAGTTTTGTACGGGATGGGGTCACTAACCACATGCCCAACCCTCCTCTTGTATCCGGGCTTGGGACCGGCAGTAGCCTCTGGAGGAGCTCCAGGCGGAGTTAATTGCCTCAACAGTGCAGACTAAATATGTTTGAACTGTGATCATCAGTGGGATCTAGGAATCATATTCTACCTTTAACTTCGAAAGCCAACCCTGTCTTATCTAGTAACTAAGTCTAAATATATATTTTGATATTACAGACAATAAATAGTAACGCATGACAGTTATTAACTGATCAATGACATATCTTGAGCAATAACTTGATAAATATATAATTTTCAGATTATATTGCACACTGATCTTAGCTAAATAACCATTGAAAATCAGAAAGCACTGGACACTTACTTCGTCTTATAATGAGACCTCTCAGAAGTGAGAACTCACAATCAATCCAAGGATTGAACCCAGGACATTTAAGTCTCAATACTAGAGTTTAACCTTTTAGAT ACTGAATCAGCATCTATTGATGTATAANTNTCTCTGGTAATCTCTCTGAAGTATTACCCGATNNTGTACTT ACATGAANT C ATAGATGATATTG ]
[-] EMBL CD074533 [ GCCTCAACGGTACTTATGGTTTGGATTACTTTTTATGGTTAGGATTTTCTTTTAGCGAGTTAGTTTTGTACGGGATGGGGTCACTAACCACATGCCCAACCCTCCTCTTGTATCCGGGCTTGGGACCGGCAGTAGCCTCTGGAGGAGCTCCAGGCGGAGTTAATTGCCTCAACAGTGCAGACTAAATATGTTTGAACTGTGATCATCAGTGGGATCTAGGAATCATATTCTACCTTTAACTTCGAAAGCCAACCCTGTCTTATCTAGTAACTAAGTCTAAATATATATTTTGATATTACAGACAATAAATAGTAACGCATGACAGTTATTAACTGATCAATGACATATCTTGAGCAATAACTTGATAAATATATAATTTTCAGATTATATTGCACACTGATCTTAGCTAAATAACCATTGAAAATCAGAAAGCACTGGACACTTACTTCGTCTTATAATGAGACCTCTCAGAAGTGAGAACTCACAATCAATCCAAGGATTGAACCCAGGACATTTAAGTCTCAATACTAGAGTTTAACC TTTAGATAACTGAATCAGCATCTATTGATGTATAATTTTCTCTGTAAATCTCTCTGAAGTATTACCCGAT TTGTACTTTAACATGAAATAA ATAGATGATATTGA]
[-] EMBL CD074557 [ TTTTATGGTTAGGATTTTCTTTTAGCGAGTTAGTTTTGTACGGGATGGGGTCACTAACCACATGCCCAACCCTCCTCTTGTATCCGGGCTTGGGACCGGCAGTAGCCTCTGGAGGAGCTCCAGGCGGAGTTAATTGCCTCAACAGTGCAGACTAAATATGTTTGAACTGTGATCATCAGTGGGATCTAGGAATCATATTCTACCTTTAACTTCGAAAGCCAACCCTGTCTTATCTAGTAACTAAGTCTAAATATATATTTTGATATTACAGACAATAAATAGTAACGCATGACAGTTATTAACTGATCAATGACATATCTTGAGCAATAACTTGATAAATATATAATTTTCAGATTATATTGCACACTGATCTTAGCTAAATAACCATTGAAAATCAGAAAGCACTGGACACTTACTTCGTCTTATAATGAGACCTCTCAGAAGTGAGAACTCACAATCAATCCAAGGATTGAACCCAGGACATTTAAGTCTCAATACTAGAGTTTAACC TTTAGATAACTGAATCAGCATCTATTGATGTATAATTTTCTCTGTAAATCTCTCTGAAGTATTACCCGAT TTGTACTTTAACATGAAAT CAATAGATGATATTGA]
consensusID : consensus_10860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 828 fasta sequence
[AGTAGTAGCAGTAGTAGAACTGGAAATTATTGATTGCTGTCTCATTACAATTATTGATCAAACACAATAAAAGCAACTAGGTGGACCTTACTAAACTCATCCCCCGTCATCAGGAGCAGAGGTAAACACCCCATAAATGGCCAAAAGAGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATACATGGCAAAACTCAGGAGGTTATTGATGTTCTTTCGGATATGAACCTTGCGGCACATCAACGTCGTCGACTTCCATACTTGGCGATTACCCTAGCCATTCAACATCGACAAACACAGTGCGAGCTAACATCAGACCTGCTATCAGACATGTGCGGCANAGTCCTCAATCAAGCTCACATTCAACAGGGATTCCAACT]
[+] EMBL CD113000 [AGTAGTAGCAGTAGTAGAACTGGAAATTATTGATTGCTGTCTCATTACAATTATTGATCAAACACAATAAAAGCAACTAGGTGGACCTTACTAAACTCATCCCCCGTCATCAGGAGCAGAGGTAAACACCCCATAAATGGCCAAAAGAGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACAC ]
[-] EMBL CD161844 [ atggtcaAAATAATTGATTGCTGTCTCA TACAATTATTGATCAAACCCAATAAAAGCAACTAGGTGGACCTTACTAAACTCATCCNCCGTCATCAGGAGCAGAGGTAAACACNCCATANATGGCCAAAAGAGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATAC ]
[+] EMBL CD162352 [ ATTGCTGTCTCATTACAATTATTGATCAAACACAATAAAAGCAACTAGGTGGACCTTACTAAACTCATCCCCCGTCATCAGGAGCAGAGGTAAACACCCCATAAATGGCCAAAAGAGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTCGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGAT ]
[+] EMBL CD178288 [ AAAAGCAGCTAGGTGGACCTTACTAAACTCATGCCCCGTCATCAGGAGCTGAGGTAAACACCCCATAAATGGCCAAAAGGGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATACATGGCAAAACTCAGGAGGTTATTGATGTTCTTTCGGATATGAACCTTGCNGCACATCAACG ]
[+] EMBL CD111019 [ TACTAAACTCATCCCCCGTCATCAGGAGCAGAGGTAAACACCCCATAAATGGCCAAAAGAGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTGGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTTGCAAACGTGGTGGAAGGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTG ]
[+] EMBL CD200030 [ CTAAACTCATCCCCCGTCATCAGGAGCAGAGGTAAACACCCCATAAATGGCCAAAAGAGGGCAAACTGTTTACTCTGGTGATAGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGG ]
[+] EMBL CD110873 [ CTAAACTCATCCCCCGTCATCAGGAGCAGAGGTAAACACCCCATAAATGGCCAAAAGAGGGCAAACTGTTTTCTCTGGTGATGGAGGTGCTGCAAGCGGCGAAGAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACG ]
[+] EMBL CD129890 [ GAGTCAGCAGGGGAAATGATCTGGCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATACATGGCAAAACTCAGGAGGTTATTGATGTTCTTTCGGATATGAACCTTGCGGCACATCAACGTCGTCGACTTCCATACTTGGCGATTACCCTAGCCATTCAACATCGACAAACACAGTGCGAGCTAACATCAGACCTGCTATCAGAC ]
[-] EMBL CD157152 [ GCCGCCACCGTCGTTTGATAAATCCCAGAAATGCCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATACATGGCAAAACTCAG ]
[+] EMBL CD158590 [ CCCCTTAGTGCAACATGGAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGGTCTCACAATTGATGGGGTTCCTTCTGACTTGCATACATTAACGGCTGCACTGCACAAAGTTCAGCTCTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATACATGGCAAAACTCAGGAGGTTATTGATGTTCTTTCGGATATGAACCTTGCGGCACATCAACGTCGTCGACTTCCATACTTGGCGATTACCCTAGCCATTCAACATCGACAAACACAGTGCGAGCTAACATCAGAACTGCTATCAGACATGTGCGGCANAGTCCTCAATCAAGCTCACATTCAACAGGGATTCCAACT]
[+] EMBL CD137773 [ CACGAGATGGGCGCAAATTACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAACTGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGTTTCAACCAACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAACGAGTTTTTCATACATGGCAAAACTCAGGAGGTTATTGATGT ]
consensusID : consensus_10860#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 806 fasta sequence
[AACATGTATTTTAAAGCTTTCTGTACGAGAGGATGAGCTGACTGAAGAGAAAAAAAAGATGCTCGATATAAATATCAACTTAGATTATACAAATTGTTATACGGTAAATTTGAGTAAAAAGACTATGTTTATAGCTTTCTGTATTCTCAGAATACATAAAAATTATTTGGTTATTCATTTTATTTGCGTGTTAATTCATACACAGCTAATACACAAATAATGGGGAAAGCATATACTGTCTTTGGAATATACTAGAAATTAAAATGGGTGAAAAATAGTTTGGTTTCGTAAAGGAGTAATCATCAAAAGACAATTTGAAACATGTGTTATTTGAGAAAGACATGAATAGATTAATTTTATTTGGCTGGTTCCAGTACATAGCGGATATATGGCACATCAACATCTTTATCATGCTCATCGCTGCAACAGACGTCAAACACCAGGACTTTGACATGGGGAGGTATCTTGCGTTTGTTGACTGCTTCCACCAAATCTCTTAATGACATAGCTAGACGTTCCTTACGCTTTGCCTCTGGCATGAAGAATGCATAGAGCATAGAAACATCTTGCGATAGCATTGTTACATTTAACTTCAAACTATCTTTGAAGTAATCAATTAAACCTTGTAAGGTCATAGGACCTGAAAGTTCGAACCGATCCCATAAAGAAAATTCTGTGTCGTAGTATTTTGATTTGATAGGTGCTACAGGTTCATAAAATGAAGTAAACGGCAATGCTAAATCGACGTAAGCATTTTTGAACAGTTCGAGTTTTTTGTGTCCTAGAACAAGCTTGAATAGTTCTAG]
[+] EMBL CD134443 [AACATGTATTTTAAAGCTTTCTGTACGAGAGGATGAGCTGACTGAAGAGAAAAAAAAGATGCTCGATATAAATATCAACTTAGATTATACAAATTGTTATACGGTAAATTTGAGTAAAAAGACTATGTTTATAGCTTTCTGTATTCTCAGAATACATAAAAATTATTTGGTTATTCATTTTATTTGCGTGTTAATTCATACACAGCTAATACACAAATAATGGGGAAAGCATATACTGTCTTTGGAATATACTAGAAATTAAAATGGGTGAAAAATAGTTTGGTTTCGTAAAGGAGTAATCATCAAAAGACAATTTGAAACATGTGTTATTTGAGAAAGACATGAATAGATTAATTT ]
[+] EMBL CD137714 [ ATCATCAAAAGACAATTTGAAACATGTGTTATTTGAGAAAGACATGAATAGATTAATTTTATTTGGCTGGTTCCAGTACATAGCGGATATATGGCACATCAACATCTTTATCATGCTCATCGCTGCAACAGACGTCAAACACCAGGACTTTGACATGGGGAGGTATCTTGCGTTTGTTGACTGCTTCCACCAAATCTCTTAATGACATAGCTAGACGTTCCTTACGCTTTGCCTCTGGCATGAAGAATGCATAGAGCATAGAAACATCTTGCGATAGCATTGTTACATTTAACTTCAAACTATCTTTGAAGTAATCAATTAAACCTTGTAAGGTCATAGGACCTGAAAGTTCGAACCGATCCCATAAAGAAAATTCTGTGTCGTAGTATTTTGATTTGATAGGTGCTACAGGTTCATAAAATGAAGTAAACGGCAATGCTAAATCGACGTAAGCATTTTTGAACAGTTCGAGTTTTTTGTGTCCTAGAACAAGCTTGAATAGTTCTAG]
consensusID : consensus_10860#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 734 fasta sequence
[CGAGCTCGGTACCCGTCTGTGATGAGAGTCTCGACTTCGTGAACGATGAGAATGACGACTATCAGATCGCGATCTGTAAGAGCCAGATCGTGACCTCTGGCCTGGTCGGTCTTCGTAAACACGTAGCCTGCGTCCATAAAGCTCGTAGCCATCAAATTTCTCGATTGCTTCCTTCATATCAGCGTAGGCAGCAAACTCAACAATGCCGTCGTTCTTAGCTGACTTGTGTGCGTCCGCATAAGTAACTTCT-CCAGCCTTACGCATCAAATCTTTGAGATCCTGTAAAAAAGAATAAACAACTGAAAAACCGTGCCCTGTATAATAAGCTAATATATACTACTAATTTGGGTTAAGCTAGCCTAGTACTTAAAAACGCGCGAGTAATTTACCTCGCGTTTTGATCTGACCACAGTACGAGACCACGTTACCACATGCTCGGCCGGACGACCGTTGAACGGCGCGACCAGAAACAACCCTGGGCGACTGACCATGGCATGGAAAACGACCAATCCTACGCGTCCTACGCCACCCGAAACGACCGAACGTCAACGAGCGGTAACTGAATTCGAGATAACAAGCAGTTAGTTACTTCTTGCAGTTCTTACAAACAATCAAACAACAATCCCTTACCTGCCAGCTCACACGCGACGAGAGATTCTCAACAATAACACGATACTCCGTCCTAGTTGGCGGACCGGTACCTGCGNGATTCGCAGAANCCAACGGGGTACCGA]
[+] EMBL CD129139 [CGAGCTCGGTACCCGTCTGTGATGAGAGTCTCGACTTCGTGAACGATGAGAATGACGACTATCAGATCGCGATCTGTAAGAGCCAGATCGTGACCTCTGGCCTGGTCGGTCTTCGTAAACACGTAGCCTGCGTCCATAAAGCTCGTAGCCATCAAATTTCTCGATTGCTTCCTT ]
[+] EMBL CD129012 [ GAGAGTCTCGACTTCGTGAACGATGAGAATGACGACTATCAGATCGCGATCTGTAAGAGCCAGATCGTGACCTCTGGCCTGGTCGGTCTTCGTAAACACGTAGCCTGCGTCCATAAAGCTCGTAGCCATCAAATTTCTCGATTGCTTCCTTCATATCAGCGTAGGCAGCAAACTCAACAATGCCGTCGTTCTTAGCTGACTTGTGTGCGTCCGCATAAGTAACTTCT CCAGCCTTACGCATCAAATCTTTGAGATCCTGTAAAAAAGAATAAACAACTGAAAAACCGTGCCCTGTATAATAAGCTAATATATACTACTAATTTGGGTTAAGCTAGCCTAGTACTTAAGAACGCGCGAGTAATTTACCTCGCGTTTTGATCTGACCACAGTACGAGACTACGTTACCACATGCTCGGCCGGACGACCGTTGAACGGCGCGACCAGAAACAACCCTGGGCGACTGACCATGGCATGGAAAACGACCAATCCTACGCGTCCTACGCCACCCGAAACGACCGAACGTCAACGAGCGGTAACTGAATTCGAGATAACAAGCAGTTAGTTACTTCTTGCAGTTCTTACAAAC ]
[-] EMBL CD167794 [ TAACTTTTCCCAGCCTTACGCATCAAATCTTTGAGATCCTGCAAAAAAGAATAAACAACTGAAAAACCGTGCCCTGTATAATAAGCTAATATATACTACTAATTTGGGTTAAGCTAGCCTAGTACTTAAAAACGCGCGAGTAATTTACCTCGCGTTTTGATCTGACCACAGTACGAGACCACGTTACCACATGCTCGGCCGGACGACCGTTGAACGGCGCGACCAGAAACAACCCTGAGCGACTGACCATGGCATGGAAAACGACCAATCCTACGCGTCCTACGCCACCCGAAACGACCGAACGTCAACGAGCGGTAACTGAATTCGAGATAACAAGCAGTTAGTTACTTCTTGCAGTTCTTACAAACAATCAAACAACAATCCCTTACCTGCCAGCTCACACGCGACGAGAGATTCTCAACAATAACACGATACTCCGTCCTAGTTGGCGGACCGGTACCTGCGNGATTCGCAGAANCCAACGGGGTACCGA]
[-] EMBL CD137624 [ GAGATCCTGTAAAAAAGAATAAACAACTGAAAAACCGTGCCCTGTATAAT AGCTAATATATACTACTAATTTGGGTTAAGCTAGCCTAGTACTTAAAAACGCGCGAGTAATTTACCTCGCGTTTTGACCTGACCACAGTACGAGACCACGTTACCACATGCTCGGCCGGACGACCGTTGAACGGCGCGACCAGAAACAACCCTGGGCGACTGACCATGGCATGGAAAACGACCAATCCTACGCGTCCTACGCCACCCGAAACGACCGAACGTCAACGAGCGGTAACTGAATTCGAGATAACAAGCAGTTAGTTACTTCTTGCAGTTCTTACAAACAATCAAACAACAA ]
consensusID : consensus_10860#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence
[GCCTGCTCGTCTTAACACCACTACCAACTACACCAACTGGCTTCTTCGCTGATACAGCATTACCCTCATCACTCGGATCCGAGTCGGAACTCGACGACGCAGGCTTCCCTACCACCTTCTTACCACCAACAGCCACACCGCTAACAGCCTTACTCACAGATGGAGACGCCTTCACCAACGCAGGCTTCTTACTCGCCGGCTGCTCGTCATCACTAGAATCTGAGTCCGAACTCGACGAAGCGGCCGCAGCTTTCCTCTTCTGAGCAGACTGAGCAGCACCTTGTGGGACAACTCCCATCCCCGTCTTAACACCACTACCAACTACACCAACTGGCTTCTTCGCTGATACAGCATTACCCACAGATGGAGACGCCTTCACCAACCGCGGCTTCTTACTCGCCCGGTGGTTGGAATTACTATAAACTGAGTCCGAACTCTACCAAACCGGCGGAGCTTT]
[+] EMBL CD149858 [GCCTGCTCGTCTTAACACCACTACCAACTACACCAACTGGCTTCTTCGCTGATACAGCATTACCCTCATCACTCGGATCCGAGTCGGAACTCGACGACGCAGGCTTCCCTACCACCTTCTTACCACCAACAGCCACACCGCTAACAGCCTTACTCACAGATGGAGACGCCTTCACCAACGCAGGCTTCTTACTCGCCGGCTGCTCGTCATCACTAGAATCTGAGTCCGAACTCGACGAAGCGGCCGCAGCTTTCCTCTTCTGAGCAGACTGAGCAGCACCTTGTGGGACAACTCCCATCCCCGTCTTAACACCACTACCAACTACACCAACTGGCTTCTTCGCTGATACAGCATTACCCACAGATGGAGACGCCTTCACCAACCGCGGCTTCTTACTCGCCCGGTGGTTGGAATTACTATAAACTGAGTCCGAACTCTACCAAACCGGCGGAGCTTT]
consensusID : consensus_10860#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[TGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCGGATTCGAGTGATGAAGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTAGTGGTGTTAAGACGGGGATGGGAGTTGTCCCACAAGGTGCTGCTCAGTCTGCTCAGAAGAAGAAAGCTGCGGCCGCTTCGTCGAGTTCGGACTCAGATTCTAGTGATGACGAGCAGCCGGCGAGTAAGAAGCCTGCGTTGGTGAAGGCGTCTCCATCTGTGAGCAAGGCTGTTAGCGGGGTGGCTGTTGGTGGTAAGAAGGTGATGGTGTCTCCTCTTGTTACTAGTTCGCGTCTTAATGGGGCTTTCAAAGTATCGAAACCTTGTGTCAATCGGAAACGTCGTTTCTCATTTGTCGGTT]
[+] EMBL CD112441 [TGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCGGATTCGAGTGATGAAGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTAGTGGTGTTAAGACGGGGATGGGAGTTGTCCCACAAGGTGCTGCTCAGTCTGCTCAGAAGAAGAAAGCTGCGGCCGCTTCGTCGAGTTCGGACTCAGATTCTAGTGATGACGAGCAGCCGGCGAGTAAGAAGCCTGCGTTGGTGAAGGCGTCTCCATCTGTGAGCAAGGCTGTTAGCGGGGTGGCTGTTGGTGGTAAGAAGGTGATGGTGTCTCCTCTTGTTACTAGTTCGCGTCTTAATGGGGCTTTCAAAGTATCGAAACCTTGTGTCAATCGGAAACGTCGTTTCTCATTTGTCGGTT]
consensusID : consensus_10860#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[GTACTACATCTATGCTTTAAGTGAAAACGCCAAACAGGATGAAGCAGGAATAAAAGAGGCATCGCTTGAATTAGGAAAATTCGTTGATGCAGAAATAAAAGCCGGAGTCCCCATCGGGAATATAGTTATCGGAGGTTTTTCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTTGGGAGGGATGTGCATGCCAGCATGGTACGACATATATGCTTTAAGTGAAAACGCCAAACAGGATGAAGCAGGAATAAAAGAGGCATCGCTTGAATTAGGAAAATTCGTTGATGCAGAAATAAAAGCCGGAGTCCCCATCGGGAATATAGTTATCGGAGGTTTTTCGCAAGGTGGCTCAGTGGGC]
[+] EMBL CD201268 [GTACTACATCTATGCTTTAAGTGAAAACGCCAAACAGGATGAAGCAGGAATAAAAGAGGCATCGCTTGAATTAGGAAAATTCGTTGATGCAGAAATAAAAGCCGGAGTCCCCATCGGGAATATAGTTATCGGAGGTTTTTCGCAAGGTGGTTCAGTGGCCCTTTATAATGCACTTGGGAGGGATGTGCATGCCAGCATGGTACGACATATATGCTTTAAGTGAAAACGCCAAACAGGATGAAGCAGGAATAAAAGAGGCATCGCTTGAATTAGGAAAATTCGTTGATGCAGAAATAAAAGCCGGAGTCCCCATCGGGAATATAGTTATCGGAGGTTTTTCGCAAGGTGGCTCAGTGGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10860#2 -------------------------AACATGTATTTTAAAGCTTTCTGTACGAGAGGATG 35
consensus_10860#6 --------------------------GTAC-TACATCTATGCTTTAAGTG-AAAACGCCA 32
consensus_10860#1 AGTAGTAGCAGTAGTAGAACTGGAAATTATTGATTGCTGTCTCATTACAATTATTGATCA 60
consensus_10860#4 ------------------GCCTGCTCGTCTTAACACCACTACCAACTACACCAACTGGCT 42
consensus_10860#5 ------------------------TGGTAGGGAAGCCTGCGTCGTCGAGTTCCGACTCGG 36
consensus_10860#0 -------------TAGGAATATGAATATACATATAATATAGTTACTTA-GCAGTTGTTTA 46
consensus_10860#3 -----CGAGCTCGGTACCCGTCTGTGATGAGAGTCTCGACTTCGTGAACGATGAGAATGA 55
consensus_10860#2 AGCTGACTGAAG-AGAAAAAAAAGATGCTCGATATAAAT-----ATCAACTTAGAT-TAT 88
consensus_10860#6 AACAGGATGAAGCAGGAATAAAAGAGGCATCGCTTGAATT---AGGAAAATTCGTT-GAT 88
consensus_10860#1 AACACAATAAAA--GCAACTAGGTGGACCTTACTAAACTC---ATCCCCCGTCATCAGGA 115
consensus_10860#4 TCTTCGCTGATA---CAGCATTACCCTCATCACTCGGATCCGAGTCGGAACTCGAC-GAC 98
consensus_10860#5 ATTCGAGTGATG---AAGGTAATGCTGTATCAGCGAAGAAGCCAGTTGGTGTAGTTGGTA 93
consensus_10860#0 ATAAGAATACATGTATAATAACAGGAGCTGTTATAGGCTTGTGAAAAGCTTAGACCATTA 106
consensus_10860#3 CGACTATCAGATCGCGATCTGTAAGAGCCAGATCGTGACCTCTGGCCTGGTCGGTC-TTC 114
*
consensus_10860#2 ACAAATTGTTATACGGTAAATTT--GAGTAAAAAG-ACTATGTTTATAGCTT------TC 139
consensus_10860#6 GCAGAAATAAAAGCCGGAGTCCC--CATCGGGAAT-ATAGTTATCGGAGGTT------T- 138
consensus_10860#1 GCAGAGGTAAACACCCCATAAAT--GGCCAAAAGA-GGGCAAACTGTTTTCT------C- 165
consensus_10860#4 GCAGGCTTCCCTACCACCTTCTTACCACCAACAGCCACACCGCTAACAGCCT------TA 152
consensus_10860#5 GTGGTGTTAAGACGGGGATGGGAGTTGTCCCACAAGGTGCTGCTCAGTCTGC------TC 147
consensus_10860#0 GAAAACCCAAATCTTTGTTGTTTCAGTGTTAAATCTGTTCTGACAAATTTTCA-TTGGTA 165
consensus_10860#3 GTAAACACGTAGCCTGCGTCCATAAAGCTCGTAGCCATCAAATTTCTCGATTGCTTCCTT 174
consensus_10860#2 TGTATTCTCAGAA-----TACATAAAAATTATTTGGTTATTCATTTTATTTGCGTGTTAA 194
consensus_10860#6 ----TTCGCAAGG-----TGGTTCAGTGGCCCTTTATAATGCACTTGGGAGGGATGTGCA 189
consensus_10860#1 ----TGGTGATGG-----AGGTGCTGCAAGCGGCGAAGAGTCAGC-AGGGGAAATGATCT 215
consensus_10860#4 CTCACAGATGGAGACGCCTTCACCAACGCAGGCTTCTTACTCGCCGGCTGCTCGTCATCA 212
consensus_10860#5 A--GAAGAAGAAAGCTGCGGCCGCTTCGTCGAGTTCGGACTCAGATTCTAGTGATGACGA 205
consensus_10860#0 TGTGCTTTCTGAGCTAATTGCCTCAACGGTACTTATGGTTTGGATTACTTTTTATGGTTA 225
consensus_10860#3 CATATCAGCGTAGGCAGCAAACTCAACAATGCCGTCGTTCTTAGCTGACTTGTGTGCGTC 234
*
consensus_10860#2 TTCATACACAGCTAATACACAAATAATGGGGAAAGCATATACTGTCTTTGGAATATACTA 254
consensus_10860#6 TGCCAGCATGG-TACGACATATATGCTTT---AAGTGAAAACGCCAAACAGGATGAAGCA 245
consensus_10860#1 GGCCGCCACCGTCGTTTGATAAATCC---------CAGAAATGCCCCTTAGTGCAACATG 266
consensus_10860#4 CTAGAATCTGAGTCCGAACTCGACGAAGCGG-CCGCAGCTTTCCTCTTCTGAGCAGACT- 270
consensus_10860#5 GCAGCCGGCGAGTAAGAAGCCTGCGTTG------GTGAAGGCGTCTCCATCTGTGAGCAA 259
consensus_10860#0 GGATTTTCTTT-TAGCGAGTTAGTTTTGT---ACGGGATGGGGTCACTAACCACATGCCC 281
consensus_10860#3 CGCATAAGTAACTTCTCCAGCCTTACGCATCAAATCTTTGAGATCCTGTAAAAAAGAATA 294
consensus_10860#2 GAAATTAAAATGGGTGAAAAATAGTTTGGTTTCGTAAAGGAGTAATCATCAA-AAGACAA 313
consensus_10860#6 GGAATAAAA------GAGGCATCGCTTGAATT-----AGGAAAATTCGTTGA-TGCAGAA 293
consensus_10860#1 GAAGAAAGAAACGCTTCCACTCTGCCTCGTTCAGCCATTCTGGTACAAACGG-TCTCACA 325
consensus_10860#4 -GAGCAGCACCTTGTGGGACAACTCCCATCCCCGTCTTAACACCACTACCAACTACACCA 329
consensus_10860#5 GGCTGTTAG-----CGGGGTGGCTGTTGGTGGTAAGAAGGTGATGGTGTCTCCTCTTGTT 314
consensus_10860#0 AACCCTCCTCT---TGTATCCGGGCTTGGGACCGGC-AGTAGCCTCTGGAGGAGCTCCAG 337
consensus_10860#3 AACAACTGAAAAACCGTGCCCTGTATAATAAGCTAATATATACTACTAATTT-GGGTTAA 353
consensus_10860#2 TTTGAAACATGTGTTATT-TGAGAA-AGACATGAATAGATTAATTTTATTTGGCTGG--- 368
consensus_10860#6 ATAAAAGCCGGAGTCCCCATCGGGA-ATATAGTTATCGGAGGTTTTTCGCAAGGTGG--- 349
consensus_10860#1 ATTGATGGGGTTCCTTCTGACTTGC-ATACATTAACGGCTGCACTGCACAAAGTTCAGCT 384
consensus_10860#4 ACTGGCTTCTTCGCTGATACAGCATTACCCACAGATGGAGACGCCTTCACCAACCGCGGC 389
consensus_10860#5 ACTAGTTCGCGTCTTAAT--GGGGCTTTCAAAGTATCGAAACCTTGTGTCAATCGGAAAC 372
consensus_10860#0 GCGGAGTTAATTGCCTCAACAGTGCAGACTAAATATGTTTGAACTGTGATCATCAGTGGG 397
consensus_10860#3 GCTAGCCTAGTACTTAAAAACGCGCGAGTAATTTACCTCGCGTTTTGATCTGACCACA-- 411
* *
consensus_10860#2 TTCCAGTACATAGCGGATATATGGCACATCAACATCTTTATCATGCTCATCGCTGCAACA 428
consensus_10860#6 CTC-AGTGGGC------------------------------------------------- 359
consensus_10860#1 CTCTGGTAGTCGTTTGCCTTATGGTAAGAATAGCAAAAAGTCACGAG-ATGGGCGCAAAT 443
consensus_10860#4 TTC--TTACTCGCCCGGTGGTTGGAATTACTATAAACTGAGTCCGAACTCTACCA-AACC 446
consensus_10860#5 GTC-GTTTCTCATTTGTCGGTT-------------------------------------- 393
consensus_10860#0 ATCTAGGAATCATATTCTACCTTTAACTTCGA-AAGCCAACCCTGTCTTATCTAGTAACT 456
consensus_10860#3 GTACGAGACCACGTTACCACATGCTCGGCCGGACGACCGTTGAACGGCGCGACCAGAAAC 471
*
consensus_10860#2 GACGTCAAACACCAGGACTTTGACATGGGGAGGTATCTTGCGTTTGTTGACTGCTTCCAC 488
consensus_10860#6 ------------------------------------------------------------
consensus_10860#1 TACCTAGCAAACGTGGTGGAAAGCATGACGATCCTACTGACATTTTGGATGAGATCGAAC 503
consensus_10860#4 GGCGGAGCTTT------------------------------------------------- 457
consensus_10860#5 ------------------------------------------------------------
consensus_10860#0 AAGTCTAAATATATATTTTGATATTACAGACAATAAATAGTAACGCATGACAGTTATTAA 516
consensus_10860#3 AACCCTGGGCGACTGACC--ATGGCATGGAAAACGACCAATCCTACGCGTCCTACGCCAC 529
consensus_10860#2 CAAATCTCTTAATGACATAGCTAGACGTTCCTTACGCTTTGCCTCTGGCATGAAGAATGC 548
consensus_10860#6 ------------------------------------------------------------
consensus_10860#1 TGGACCCTGAGGATCCTGACTTTGATTCTGATGAGGATACACCTGTTACGTTTGATGAGT 563
consensus_10860#4 ------------------------------------------------------------
consensus_10860#5 ------------------------------------------------------------
consensus_10860#0 CTGATC----AATGACATATCTTGAGCAATAACTTGATAAATATATAATTTTCAGATTAT 572
consensus_10860#3 CCGAAACGACCGAACGTCAACGAGCGGTAACTGAATTCGAGATAACAAGCAGTTAGTTAC 589
consensus_10860#2 ATAGAGCATAGAAACATCTTGCGATAGCATTGTTACATTTAACTTCAAACTATCTTTGAA 608
consensus_10860#6 ------------------------------------------------------------
consensus_10860#1 TTCAACCA-----ACTCTGGCTGATGATGTATTTGAAAAGACTTTCTTCTCATTGATGAA 618
consensus_10860#4 ------------------------------------------------------------
consensus_10860#5 ------------------------------------------------------------
consensus_10860#0 ATTGCACA------CTGATCTTAGCTAAATAACCATTGAAAATCAGAAAGCACTGGACAC 626
consensus_10860#3 TTCTTGCA--GTTCTTACAAACAATCAAACAACAATCCCTTACCTGCCAGCTCACACGCG 647
consensus_10860#2 GTAATCAATTAAACCTTGTAAGGTC--ATAGGACCTGAAAGTTCGAACCGATCCCATAAA 666
consensus_10860#6 ------------------------------------------------------------
consensus_10860#1 CGAGTTTTTCATACATGGCAAAACTCAGGAGGTTATTGATGTTCTTTCGGATATGAACCT 678
consensus_10860#4 ------------------------------------------------------------
consensus_10860#5 ------------------------------------------------------------
consensus_10860#0 TTACTTCGTCTTA--TAATGAGACCTCTCAGAAGTGAGAACTCACAATCAATCCAAGGAT 684
consensus_10860#3 ACGAGAGATTCTCAACAATAACACGATACTCCGTCCTAGTTGGCGGACCGGTACCTGCGN 707
consensus_10860#2 GAAAATTCTGTGTCGTAGTATTTTGATTTGATAGGTGCTACAGGTTCATAAAATGAAGTA 726
consensus_10860#6 ------------------------------------------------------------
consensus_10860#1 TGCGGCACATCAACGTCGTCGACTTCCATACTTGGCGATTACCCTAGCCATTCAACATCG 738
consensus_10860#4 ------------------------------------------------------------
consensus_10860#5 ------------------------------------------------------------
consensus_10860#0 TGAACCCAGGACATTTAAGTCTCAATACTAGAGTTTAACCTTTAGATAACTGAATCAGCA 744
consensus_10860#3 GATTCGCAGAANCCAACGGGGTACCGA--------------------------------- 734
consensus_10860#2 AACGGCAATGCTAAATCGACGTAAGCATTTTTGAACAGTTCGAGTTTTTTGTGTCCTAGA 786
consensus_10860#6 ------------------------------------------------------------
consensus_10860#1 ACAAACACAGTGCGAGCTAACATCAGACCTGCTATCAGACATGTGCGGCANAGTCCTCAA 798
consensus_10860#4 ------------------------------------------------------------
consensus_10860#5 ------------------------------------------------------------
consensus_10860#0 TCTATTGATGTATAATTTTCTCTGTAAATCTCTCTGAAGTATTACCCGATTTGTACTTTA 804
consensus_10860#3 ------------------------------------------------------------
consensus_10860#2 ACAAGCTTGAATAGTTCTAG---------- 806
consensus_10860#6 ------------------------------
consensus_10860#1 TCAAGCTCACATTCAACAGGGATTCCAACT 828
consensus_10860#4 ------------------------------
consensus_10860#5 ------------------------------
consensus_10860#0 ACATGAAATCATAGATGATATTGA------ 828
consensus_10860#3 ------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||