cluster # 10878

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Schistosoma mansoni
cluster # 10878 cluster # 10878 Sequences # 24 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10878#0 length = 1351 sequences # 22

consensus_10878#1 length = 336 sequences # 2

consensusID : consensus_10878#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 22
consensus length = 1351
fasta sequence

                              [TCAAGGTTTTGCTGGGTCTAAAAATATGATTAAATGTATTTTCATATAGATGCAGATGCATATAGTGCTAACAGCGCAAACGCGCAGATAAAAACGCTCAAAATGAAGCTTTAGAATTACACCATAATAGGTTCCCAA-AAATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATATATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTTTGGAAAGAGTAGGAATACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC-AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG-AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC-GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA-GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATAAAACTGATTCCATACGATTGGGCGAGCTTAAAACCATTTTCATACTTTACTACTCTTTGTGCTTCGAGATCGCATTTATTTCCAAGTAGCATCTTCGCTACGCCTTCATTAGTATGCT-CGGTTATGTTGTTCATCCAGGTAGTGATATTATGGTAAGAATCTAGATTAGTAACATCGTAAACAAGCATGATACCCATCGCACCACGATAATAAGCTGTTGTTATAGTTCTAAAACGTTCCTGACCGGCAGTATCCCATATCTGCAACTTAATTTTTTTCCCGTCAATTTCTATGGTGCGAACTTTGAAGTCAATGCCTATGGTTGCTATGAAAGTTTTGCTAAAACTATTGTCGGAAAACCGGAGGAGAAGGTTTGTTTTACCAACAGATGAATCACCAACAAGTAAAAGCTTATACATTTCATCGTAATCCTTTGTACCATTTGGAGCCTTAGCCATTTTA]

[-] EMBL CD141344             [TCAAGGTTTTGCTGGGTCTAAAAATATGATTAAATGTATTTTCATATAGATGCAGATGCATATAGTGCTAACAGCGCAAACGCGCAGATAAAAACGCTCAAAATGAAGCTTTAGAATTACACCATAATAGGTTCCCAA AAATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATATATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTTTGGAAAGAGTAGGAATACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD137307             [                                                        TGCATATAGTGCTAACAGCGCAAACGCGCAGATAAAAACGCTCAAAATGAAGCTTTAGAATTACACCATAATAGGTTCCCAA AAATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATATATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTTTGGAAAGAGTAGGAATACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD069330             [                                                              TAGTGCTAACAGCGCAAACGCGCAGAT AAAACGCTCAAAATGAAGCTTTAGAATTACACCATAATAGGTTCCCAATAAATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATATATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTTTGGAAAGAGTAGGAATACGTACCAGAATGGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAATCATACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATNATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD098386             [                                                                                                                                             ATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATATATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTTTGGAAAGAGTAGGAATACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACGAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGGAAAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAAGGGCA CAAATGAAGATCCta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD110968             [                                                                                                                                             ATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATATATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTCTTGGAAAGAGTAGGAGTACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD111474             [                                                                                                                                                                                                                            AAGTAGGACAGAATCAGGTTTTGGAAAGAGTAGGAATACGTACCAAAATGGATGATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATACGGAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CD156613             [                                                                                                                                                                                                                                                              AATACGTACCAAAATGGATTATTTATAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTACACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCCTAACAACGAAAGG AAAAAAAACCTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD156805             [                                                                                                                                                                                                                                                                             GGATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CD156603             [                                                                                                                                                                                                                                                                             GGCTTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAACAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAACATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCTAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL CD156708             [                                                                                                                                                                                                                                                                              GATTATTTACAATCACTGAGAAACTAGTGATC TGAGNC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATANAACCGGCTTGATTCGTANCAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD090009             [                                                                                                                                                                                                                                                                              GATTATTTACAATCACTGAGAAACTAGTGATCTTGAGAC AAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGCGATAAAACCGGCTTGATTCGTAACACCGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD197441             [                                                                                                                                                                                                                                                                                             CTGAGAAACTAGTGATCTTGAGACAAAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGGTAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD154223             [                                                                                                                                                                                                                                                                                                                                                                TAACCATGAGGTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTCTTATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATANAACTGATTCCATACGATTGNGCGAGCTT AAACCATTTTCATACTNTACTACTCTNTGTGCTTCGAGATCGCATTTATTTCCAAGTAGCATCTTCGCTACGCCTTCATTAGTATGCTNCGG TATGNTGNTCATCCAGGTAGTGA                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD178175             [                                                                                                                                                                                                                                                                                                                                                                                           ACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACCGGCTTGATTCGTAACAACGAAAGG AAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCTGATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD177800             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            agaaGCTGATAAAATATGTTTTTATAATGGTAGAAGTAGATAATTGAAGACATTAAGCGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTATAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCTTTTAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CD181767             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CD181578             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGGTGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD181772             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTATGATGGAGAGATAGAACCCATCTGTGTCAAATAC GAGCAAGGGACGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CD136625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            CGACGAAGAAATGAGGCTATAAAA GGCACCAAATGAAGATCCCTAAAATCAAGAATTGCTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATTGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTCTTATGTCTTCTCTAGGCGGATTATTAAGGTTAGCTTCCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CD182261             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         AGGCTATAAAA GGCACCAAATGAAGATCCCCAAAATCAAGAATTGTTCAATGTTTGAGTGCGGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCAGAGACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL AI976235             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  TATAGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTCATATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCGTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATAGAACTGATTCCATACGATTGGGCGAGCTTAAAACCATTTTCATACTTTACTACTCTTTGTGCTTCGAGATCGCATTTATTTCCAAGTAGCATCTTCGCTACGCCTTCATTAGTATGCT CGGTTATGTTGTTCATCCAGGTAGTGATATTATGGTAAGAATCTAGATTAGTAACATCGTAAACAAGCATGATACCCATCGCACCACGATAATAAGCTGTTGTTATAGTTCTAAAACGTTCCTGACCGGCAGTATCCCATATCTGCAACTTAATTTTTTTCCCGTCAATTTCTATGGTGCGAACTTTGAAGTCAATGCCTATGGTTGCTATGAAAGTTTTGCTAAAACTATTGTCGGAAAACCGGAGGAGAAGGTTTGTTTTACCAACAGATGAATCACCAACAAGTAAAAGCTTATACATTTCATCGTAATCCTTTGTACCATTTGGAGCCTTAGCCATTTTA]
[+] EMBL CD200727             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TATGTCTTCTCTAGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGATTGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATAAAACTGATTCCATACGATTGGGCGAGCTTAAAACCATTTTCATACTTTACTACTCTTTGTGCTTCGAGATCGCATTTATTTCCAAGTAGCATCTTCGCTACGCCTTCATTAGTATGCT CGGTTATGTTGTTCATCCAGGTAGTGATATTATGGTAAGAATCTAGATTAGTAACATCGTANACAAGCATGATACCCATCGCACCACGATAATAAGCTGTTGTTATAGTTCTAAAACGTTCCTGACCG                                                                                                                                                                                                                        ]




>consensus_10878#0
TCAAGGTTTTGCTGGGTCTAAAAATATGATTAAATGTATTTTCATATAGATGCAGATGCA
TATAGTGCTAACAGCGCAAACGCGCAGATAAAAACGCTCAAAATGAAGCTTTAGAATTAC
ACCATAATAGGTTCCCAAAAATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATA
TATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTT
TGGAAAGAGTAGGAATACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGAT
CTTGAGACAAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAG
GTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACC
GGCTTGATTCGTAACAACGAAAGGAAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCT
GATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTA
TGATGGAGAGATAGAACCCATCTGTGTCAAATACGAGCAAGGGACGACGAAGAAATGAGG
CTATAAAAGGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGCGG
GATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAATAT
AGAGCATCCCCACATTAGGCGTTTGGGTCGTTTGCTGGTTATATTTTTTATGTCTTCTCT
AGGTGGGTTATTAAGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCAAGAT
TGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATAAAACTGATTCC
ATACGATTGGGCGAGCTTAAAACCATTTTCATACTTTACTACTCTTTGTGCTTCGAGATC
GCATTTATTTCCAAGTAGCATCTTCGCTACGCCTTCATTAGTATGCTCGGTTATGTTGTT
CATCCAGGTAGTGATATTATGGTAAGAATCTAGATTAGTAACATCGTAAACAAGCATGAT
ACCCATCGCACCACGATAATAAGCTGTTGTTATAGTTCTAAAACGTTCCTGACCGGCAGT
ATCCCATATCTGCAACTTAATTTTTTTCCCGTCAATTTCTATGGTGCGAACTTTGAAGTC
AATGCCTATGGTTGCTATGAAAGTTTTGCTAAAACTATTGTCGGAAAACCGGAGGAGAAG
GTTTGTTTTACCAACAGATGAATCACCAACAAGTAAAAGCTTATACATTTCATCGTAATC
CTTTGTACCATTTGGAGCCTTAGCCATTTTA

consensusID : consensus_10878#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 336
fasta sequence

                              [ACATTTAATCATATTTTTAGACCAGCAAAACCTTGAAATTCTGTCTACAGTTTCACTTACAGAATATGTACACCTATTTATGGCTTACAAAGCCGTTATAGATTATACTTATAAACTTCTCTGTTAGGCACAATATATCATCTGTACTGGGAGTTGGTCTTGCTGGTTTCAGTTGATTTCTTCATTTGATTAAACTTCAAGTAAAAACAACTGTTTCTCAAGAAAACGTATGCTTTTCTAAAGCATGTGATTTTTATTATTGGTCTTCTATTATCAGAATTCCCTAAGGAATTCTCGATAGAGTTGTTTCTCGTCTTTCTGGTCTTGCTTTTTCCA]

[-] EMBL CD182697             [ACATTTAATCATATTTTTAGACCAGCAAAACCTTGAAATTCTGTCTACAGTTTCACTTACAGAATATGTACACCTATTTATGGCTTACAAAGCCGTTATAGATTATACTTATAAACTTCTCTGTTAGGCACAATATATCATCTGTACTGGGAGTTGGTCTTGCTGGTTTCAGTTGATTTCTTCATTTGATTAAACTTCAAGTAAAAACAACTGTTTCTCAAGAAAACGTATGCTTTTCTAAAGCATGTGATTTTTATTATTGGTCTTCTATTATCAGAATTCCCTAAGGAATTCTCGATAGAG                                 ]
[+] EMBL AA566199             [                                                                                                                                                                                                            AAACAACTGTTTCTCAAGAAAACGTATGCTTTTCTAAAGCATGTGATTTTTATTATTGGTCTTCTATTATCAGAATTCCCTAAGGAATNCTCGATAGAGTTGTTTCTCGTCTTTCTGGTCTTGCTTTTTCCA]




>consensus_10878#1
ACATTTAATCATATTTTTAGACCAGCAAAACCTTGAAATTCTGTCTACAGTTTCACTTAC
AGAATATGTACACCTATTTATGGCTTACAAAGCCGTTATAGATTATACTTATAAACTTCT
CTGTTAGGCACAATATATCATCTGTACTGGGAGTTGGTCTTGCTGGTTTCAGTTGATTTC
TTCATTTGATTAAACTTCAAGTAAAAACAACTGTTTCTCAAGAAAACGTATGCTTTTCTA
AAGCATGTGATTTTTATTATTGGTCTTCTATTATCAGAATTCCCTAAGGAATTCTCGATA
GAGTTGTTTCTCGTCTTTCTGGTCTTGCTTTTTCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10878#0      TCAAGGTTTTGCTGGGTCTAAAAATATGATTAAATGTATTTTCATATAGATGCAGATGCA 60
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      TATAGTGCTAACAGCGCAAACGCGCAGATAAAAACGCTCAAAATGAAGCTTTAGAATTAC 120
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      ACCATAATAGGTTCCCAAAAATAAAGAAGTCAGAGAATATAGGGCCAAATTAACAACATA 180
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      TATACATATAGTTTAGCAACTTAACAAGTTTTGGAAAAGAAGTAGGACAGAATCAGGTTT 240
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      TGGAAAGAGTAGGAATACGTACCAAAATGGATTATTTACAATCACTGAGAAACTAGTGAT 300
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      CTTGAGACAAAAAATAAAACAATCATGAAAAACTGCACGTCAGTGTAGACTAACCATGAG 360
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      GTGGAAGAAACCAAACCACACAAAAATTATTCCAACTAATTTTAATTAAGTGATAAAACC 420
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      GGCTTGATTCGTAACAACGAAAGGAAAAAAAACTTAATGAAAGGGAAAAAGCAATTTGCT 480
consensus_10878#1      ----------------------------------------------------------AC 2
                                                                                   

consensus_10878#0      GATAAAATATGTTTTTATAATGGTAAAAGTAGATAATTGAAGACAATAAACGAAACTGTA 540
consensus_10878#1      ATTTAATCATATTTTTAGACCAGCAAAACCTTGAAATT-----CTGTCTACAGTTTCACT 57
                         * **  ** ****** *   * ****      ****     *  *  **         

consensus_10878#0      TGATGGAGAGATAGAACCCATCTGTGTCAAATACGAGCA--AGGGACGACGAAGAAATGA 598
consensus_10878#1      TACAGAATATGTACA-CCTATTTATGGCTTACAAAGCCGTTATAGATTATACTTATAAAC 116
                       *   * * *  ** * ** ** * ** *  * *    *   *  **  *     * *   

consensus_10878#0      GGCTATAAAAGGCACCAAATGAAGATCCCTAAAATCAAGAATTGTTCAATGTTTGAGTGC 658
consensus_10878#1      TTCTCTGTTAGGCACAATAT----ATCATCTGTACTGGGAGTTGGTC--TTGCTGGTTTC 170
                         ** *   ****** * **    ***      *    ** *** **  *   **  * *

consensus_10878#0      GGGATAGATGATGTCTAAAAGGAGTTTCTTGGAAAAACCAATGGAGAAGCCATTTACAAT 718
consensus_10878#1      AGTTGATTTCTTCATTTGATTAAACTTCAAGTAAAAACAACTGT--------TTCTCAAG 222
                        *   *  *  *   *  *   *  ***  * ****** * **         **  *** 

consensus_10878#0      ATAGAGCATCCCCACATTAGGCGTTTGGGTCGT-TTGCTGGTTATATTTTTTATGTCTTC 777
consensus_10878#1      AAAACGTATGCTTTTCTAAAGCATGTGATTTTTATTATTGGTCTTCTATTATCAGAATTC 282
                       * *  * ** *     * * ** * **  *  * **  ****  * * ** *  *  ***

consensus_10878#0      TCTAGGTGGGTTATTA-AGGTTAGCTTCCTGCTCCCTCTTGGCTTTTATTTTTCGGGCCA 836
consensus_10878#1      CCTAAGGAATTCTCGATAGAGTTGTTTCTCG-TCTTTCTGGTCTTGCTTTTTCCA----- 336
                        *** *    *    * **  * * ***  * **  *** * ***   **** *      

consensus_10878#0      AGATTGTAAACGCTTCAGAGACGTTAATACCCCCTTTAGCACTGGTCTCAATAAAACTGA 896
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      TTCCATACGATTGGGCGAGCTTAAAACCATTTTCATACTTTACTACTCTTTGTGCTTCGA 956
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      GATCGCATTTATTTCCAAGTAGCATCTTCGCTACGCCTTCATTAGTATGCTCGGTTATGT 1016
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      TGTTCATCCAGGTAGTGATATTATGGTAAGAATCTAGATTAGTAACATCGTAAACAAGCA 1076
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      TGATACCCATCGCACCACGATAATAAGCTGTTGTTATAGTTCTAAAACGTTCCTGACCGG 1136
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      CAGTATCCCATATCTGCAACTTAATTTTTTTCCCGTCAATTTCTATGGTGCGAACTTTGA 1196
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      AGTCAATGCCTATGGTTGCTATGAAAGTTTTGCTAAAACTATTGTCGGAAAACCGGAGGA 1256
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      GAAGGTTTGTTTTACCAACAGATGAATCACCAACAAGTAAAAGCTTATACATTTCATCGT 1316
consensus_10878#1      ------------------------------------------------------------
                                                                                   

consensus_10878#0      AATCCTTTGTACCATTTGGAGCCTTAGCCATTTTA 1351
consensus_10878#1      -----------------------------------