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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10884#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1008 fasta sequence
[AGGCCAAGGATAGGGCACGAGGAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG]
[+] EMBL CD081355 [AGGCCAAGGATAGGGCACGAGGAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGGCACTTCTGATGANCATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCCTCACGTACTGTTTGTCTAAC AT TATGAATCCAGCTCTCAAAGTA TCTGGTA AAACATATGTATACAGGGGTTTTGCATCCGG TTAT AAGGAT ATCCATGGT AAGTTTCTGAG TTTTGGATAAACCAA ]
[+] EMBL CD078805 [ AGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGGCACTTCTGATGACAATTGACTNTCCGTGTTCATTTCC ATCACATTTAT AATGACAGTTT ]
[+] EMBL BG932475 [ AGGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGAGATATACCTTTTTCGCCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCT ]
[-] EMBL CD073265 [ GGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGA ]
[-] EMBL CD075187 [ CTTACATATCTGNAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAA ]
[+] EMBL CD131339 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGCAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATACTCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTNTCCAGTAGTCTTG]
[+] EMBL CD131479 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTGGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG]
[+] EMBL CD131534 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCCGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG]
[+] EMBL CD131586 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG]
[+] EMBL CD131272 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAGAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAGATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG]
[+] EMBL CD131576 [ TAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAGAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAGATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG]
consensusID : consensus_10884#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 805 fasta sequence
[CCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTNTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTANGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT--AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATC-TACATCTCTAATC-TGTGACTAGTAGGANTTTGGNC-TGATTTTAACTATTGCCCTCAAAATTTGGGTTGG-TGGTGCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGG]
[-] EMBL CD120479 [CCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTNTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGGTAATTATAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTANGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTCTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATT ]
[+] EMBL CD136526 [ AACCTTACGAGGGGGGACGTGGATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGcc ]
[+] EMBL SM908 [ GTGGATTCCCTTTAACTTACTTATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGNGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGGTNGGTGGTAGTGTAGATCTTACATCTCTAATCTTGTGACTAGTAGGANTTTGGNCTTGATTTTAACTATTGGCCTCAAAAATTGGGGTGG GGGTGgtc ]
[+] EMBL CD065666 [ CCCTTCAT ATGTTCCTGCCTTACAGATGA CACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTAAAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGACCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATC TACATCTCTAATC TGTGACTAGTA GAATTTTGTC TGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGG]
[+] EMBL CD167272 [ CCCTC TAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGC AAANGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTA AAAAAAAGAGCTATGATGATGGAAAAAG ]
[+] EMBL CD137167 [ GCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCTA AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAGAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTACATC TACATCTCTAATC TGTGACTAGTAGAATATTGG C TGATTTTAACTATTGCCCTCAAAATTTGGGTTGG TTGCTCACGTACTGTTTGTTTAACACTTTATG ATCCACCTCTTAAAGTGGCCTGGTAGATACATATGTATACCGGGTGTTCc ]
[-] EMBL CD136575 [ CACGATGCAAAATGTTTNTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAA ]
[+] EMBL CD146353 [ CATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAAGCT AAAAAAAGAGCTATGATGATGGAAAAAGTTAGAA ]
consensusID : consensus_10884#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 544 fasta sequence
[GTTTTTAGTTATGGTAATTCCTCTTTACAGAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAAGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTGT]
[-] EMBL CD131509 [GTTTTTAGTTATGGTAATTCCTCTTTACAGAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCGATGGCCACTCTACCATACAGCGCGTTTAAAGACTGCAACTTCTGATGACAATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAAATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAGTAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAAGATAATTCATTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAATTTCAGCCCATTATTGTTGTAATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGGAAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTGT]
consensusID : consensus_10884#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 461 fasta sequence
[TTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCAGGATAAAGGCTACAAAAGTACCAGTTCTTTCCATAGAAAAAGTTGGCTTAGCTGAAGTTGTAGGCCCCTCTGACATACATACGCAGTCTCAACAAAATATTTGCTCGGGTAAGAAAATAGAATTTGTCTGGTGTTTTTTTAGTATGTGTTCCGCAGGGTCCTGCTTATTTATCCTTTCCACAGCTTCAGAAGAACACTGAAATCAATATTTCTTTCCTTCAAAGAGCGTCCACATTCACAGTACAAAATAGTTCTATGTCTATTCCTACGGAGAAACAAAATTATTAAATACACTTTGTTTTCCAAGTTCCGTGAAGC]
[-] EMBL CD128417 [TTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCAGGATAAAGGCTACAAAAGTACCAGTTCTTTCCATAGAAAAAGTTGGCTTAGCTGAAGTTGTAGGCCCCTCTGACATACATACGCAGTCTCAACAAAATATTTGCTCGGGTAAGAAAATAGAATTTGTCTGGTGTTTTTTTAGTATGTGTTCCGCAGGGTCCTGCTTATTTATCCTTTCCACAGCTTCAGAAGAACACTGAAATCAATATTTCTTTCCTTCAAAGAGCGTCCACATTCACAGTACAAAATAGTTCTATGTCTATTCCTACGGAGAAACAAAATTATTAAATACACTTTGTTTTCCAAGTTCCGTGAAGC]
consensusID : consensus_10884#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 242 fasta sequence
[CCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAACACTTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAGCTAAAAAAAGAGCTATGATGATGGAAAAGTAGAGAGGTAAGTTCCGTGAGC]
[-] EMBL CD065456 [CCTTCATAGATGTTCCTGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAGACAACACTTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAGCTAAAAAAAGAGCTATGATGATGGAAAAGTAGAGAGGTAAGTTCCGTGAGC]
consensusID : consensus_10884#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 171 fasta sequence
[CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNTBSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAAGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGA]
[-] EMBL BE519406 [CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNTBSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAAGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGA]
[-] EMBL SMLRAP021 [CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNTBSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAAGGGGCGTTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGAAACAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10884#0 AGGCCAAGGATAGGGCACGAGGAGCGTCTCCGTCTTTCCTTGTTGATGGCGGAGGGGGCG 60
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 ------------------------------------------------------------
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 TTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGA 120
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 ------------------------------------------------------------
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 AACAGAGATATACCTTTTTCACCAAACATGTTCCAGCCATTTTATAATTTCACGAGAAAA 180
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 -----------------------------------------------------------C 1
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 ATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGGATTCCCTTTAACTTACATATCT 240
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 CTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTNTAATTCAAGATTTTGCCA 61
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 GGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCCTGCCTTACAGATGACCACATCA 300
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 AATTATGGAGCGTGACTTCTTCCGGTAATTATAGATCAGGAAAGACTTGATCGCCTGAAT 121
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 TGGTTCACGATGCAAAATGTTTTTAATTCAAGATTTTGCCAAATTATGGAGCGTGACTTC 360
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 AATGAAGCTANGAGCAAAGAGAAACAGAGATATACCTTTTTCACCAAACATGTTCCAGCC 181
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 TTCCGGTAATTATATCTCAAATACTTTTCTCAGATCTTAAAGCTGTGTTGCAAGAGTTGG 420
consensus_10884#2 ------------------------------------------------------------
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 ATTTTATAATTTCACGAGAAAAATATTTGCAACTGAGAAACCTTACGAGGGTGGACGTGG 241
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 CATTCAAAATACAGACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAA 480
consensus_10884#2 -------------------------------------------GTTTTTAGTTATGGTAA 17
consensus_10884#3 ------------------------------------------------------------
consensus_10884#4 --------------------------------------------CCTTCATAGATGTTCC 16
consensus_10884#1 ATTCCCTTTAACTTACATATCTGGAGGGAACTTTCTCCATCGCCCCTTCATAGATGTTCC 301
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 TCATGATAAAGCTAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAGAGGTAAAGAAAAT 540
consensus_10884#2 TTCCTCTTTACAGAAAAAAAGAGCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAAT 77
consensus_10884#3 -------------------------TTCACGATGCAAAATGTTTTTAAT-TCAAGATTTT 34
consensus_10884#4 TGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAAT-TCAAGATTTT 75
consensus_10884#1 TGCCTTACAGATGACCACATCATGGTTCACGATGCAAAATGTTTTTAAT-TCAAGATTTT 360
consensus_10884#5 -----------CAARTGGATAGGGACTTATATTGVGGACGTCTATGACGCTGGCCCVBNT 49
* * ** * * * *
consensus_10884#0 G--GAGCCGATGGCCACTCTACCATACAGCGCGTT-TAAAGACTGCAACTTCTGATGACA 597
consensus_10884#2 G--GAGCCGATGGCCACTCTACCATACAGCGCGTT-TAAAGACTGCAACTTCTGATGACA 134
consensus_10884#3 GCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAG 94
consensus_10884#4 GCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAG 135
consensus_10884#1 GCCAAATTATGGAGCGTGACTTCTTCCGCTGTGTTGCAAGAGTTGGCATTCAAAATACAG 420
consensus_10884#5 BSCGGACAATACCCCTGAAGCGTCTCCGTCTTTCCTT----GTTGATGGCGGAAGGGGCG 105
* * * **
consensus_10884#0 ATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAG 657
consensus_10884#2 ATTGACTTTCCGTGTTCATTTCCAATCACATTTATAAATGACAGTTTGTTGTTAGTGTAG 194
consensus_10884#3 ACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCAGGATAAAGGCT 154
consensus_10884#4 ACAACACTTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAA--GCT 193
consensus_10884#1 ACAAACATTGCAAAATATACTGGGAAGATTTGCTTGAATGTCAGAATCATGATAAA-GCT 479
consensus_10884#5 TTTGTCATAACAGATCAGGAAAGACTTGATCGCCTGAATAATGAAGCTAGAGCAAAGAGA 165
* * * *** *
consensus_10884#0 ATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAA 717
consensus_10884#2 ATCTACATCTCTAATCTGTGACTAGTAGAATTTTGTCTGATTTTAACTATTGCCCTCAAA 254
consensus_10884#3 ACAAAAGTACCAGTTCTTTCCATAGAAAAAGTTGGCTTAGCTGAAGTTGTAGGCCCC--- 211
consensus_10884#4 AAAAAAAGA---GCTATGATGATGGAAAAG--TAGAGAGGTAAGTTCCGTGAGC------ 242
consensus_10884#1 AAAAAAAGA---GCTATGATGATGGAAAAAGTTAGAAAGGTAAAGAAAATGGAGCCG--- 533
consensus_10884#5 AACAGA------------------------------------------------------ 171
*
consensus_10884#0 ATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAG 777
consensus_10884#2 ATTTGGGTTGGTTGCTCCACGTACTGTTTGTTTAACAATATATGAATCCAGCTCTCAAAG 314
consensus_10884#3 -TCTGACATACA-----TACGCAGT-----CTCAACAAAATATTTGCTCGGGTAAGAAAA 260
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 -ATGGCCACTCTA---CCATACAGC-----GCGTTTAAAGACTGCAACTTCTGATGACAA 584
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 TAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAGGATAATTCA 837
consensus_10884#2 TAGTCTGGTAGATACATATGTATACAGGGTTTTCGCATTCGGCTTATAAAAGATAATTCA 374
consensus_10884#3 TAG-------AATTTGTCTG---GTGTTTTTTTAGTATGTGTTCCGCAGGGTCCTGCTTA 310
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 TTG-------ACTTTCCGTG---TTCATTTCCAATCACATTTATAAATGACAGTTTGTTG 634
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 TTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAAAAATTTCAGCCCATTATTGTTGT 897
consensus_10884#2 TTGTAAAGTTTCTGAGTTTTTGGATAAACCAAAAAAA--ATTTCAGCCCATTATTGTTGT 432
consensus_10884#3 TTTATCCTT-TCCACAGCTTCAGAAGAACACTGAAAT------CAATATTTCTTTCCTTC 363
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 TTAGTGTAGATCTACATCTCTAATCTGTGACTAGTAG------GANTTTGGNCTGATTTT 688
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 AATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGG 957
consensus_10884#2 AATCTGCTTTCCAACAACCTCGACAATATAATCTTGGCTACAGTTCGATGGAAATGTCGG 492
consensus_10884#3 AAAGAGCGTCCACAT--TCACAGTA-CAAAATA---GTTCTATGTCTATTCCTACGGAGA 417
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 AACTATTGCCCTCAAAATTTGGGTT-GGTGGTGCACGTACTGTTTGTTTAACAATATATG 747
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 AAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTG--------- 1008
consensus_10884#2 AAACCTACTAATGGGTTAACTGGCTAGCCGACTGAGTTTCCAGTAGTCTTGT-------- 544
consensus_10884#3 AACAAAATTATTAAATACACT---TTGTTTTCCAAGTTCCGTGAAGC------------- 461
consensus_10884#4 ------------------------------------------------------------
consensus_10884#1 AATCCAGCTCTCAAAGTAGTC---TGGTAGATACATATGTATACAGGGTTTTCGCATTCG 804
consensus_10884#5 ------------------------------------------------------------
consensus_10884#0 -
consensus_10884#2 -
consensus_10884#3 -
consensus_10884#4 -
consensus_10884#1 G 805
consensus_10884#5 -
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||