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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1731 fasta sequence
[CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGGTACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAA-CAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTNTG-ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAA-ATAACTGCAACTGACGTCTTCGAGGAACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAGGCAAGGAAGTCGAAGAACAAGATAGTCATATGACGGGAGTTTTCATAAAACCAATATCTCAACATGTTGATCATAAATCTACTTCAACTGACAGAAACCAGATAAAATATGTTGTACAGGAATTAATAGATACCATTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCGACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCACAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCATATCGACTGTAACACCTCAATCCCCTCCTGTCTATAGTACAGATAAAAGTGGAATATCTGATTCTATGGATACACTGAGTACTGGGTTTATTATGCCACANATCTTTCCTACTG]
[+] EMBL CD071563 [CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTGCCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCATTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAATCGACCGATCTGGGTACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAA CAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGCTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAATCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGC ACGCTCAAAACACTTTTGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTtc ]
[+] EMBL CD089125 [ CTAGAAACGCTAGACAAATTACAAAAA CAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGCCTGACGCGCTCACTAAAACAAGTCATTNTG ATGCTATTCCCTCA ]
[+] EMBL CD089162 [ CTAGAAACGCTAGACAAATTACAAAAANCAACTTCCTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTGCTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGGAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTANAAC AGTCATTCTG ATGCTATCNCCTC ]
[+] EMBL CD137604 [ AATGATAAAACTCTGGAGTGTTTAGAACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCTGGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCGACCATTCCATGAGAATCGAATTGCATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTANAGCAAGTCATTNTG ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAANAT ACTGCAACTGACGTCTTCGAGGAA ]
[-] EMBL CD187780 [ GTTGGAAATCTGGTACCAGTGTTAAGATCTGATGAACAGCTGAACTTTACCATTCAACCATTCCATGAGAATCGAATTACATTCCCAGTCCGTTTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGTGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTG ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAA ATAACTGCAACTGACGTCTTCGAGGAACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCA ]
[-] EMBL CD068399 [ TTGCGAGACGTATTGAGTCATGAGTCAGATTCGGATACAGTTACTGGAAAAATCGCATTTGCGCGTGAACCACGCAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTG ATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTCACGACGAAAGAAGAA ATAACTGCAACTGACGTCTTCGAGGAACG ]
[+] EMBL SMCER1 [ CAACGCTCAAACAACTTTGGATATGACTAGCGCACAACCGCAAGGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACCCCCTCACTAAAACAAGTCATT TGAATGCTATTCCCTCAAGTGTAACTGATGTACACCCAGTAACGACGAAAGAAGAA ATAACTGCAACTGACGTCTTCGAGGAACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAGGCAAGGAAGTCGAAGAACAAGATAGTCATATGACGGGAGTTTTCATAAAACCAATATCTCAACATGTTGATCATAAATCTACTTCAACTGACAGAAACCAGATAAAATATGTTGTACAGGAATTAATAGATACCATTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCGACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCACAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCA ]
[-] EMBL CD063306 [ ACGACCTGTCCTGCCATTGCCTACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGGAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAG ]
[-] EMBL CD063297 [ ACCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAG ]
[-] EMBL CD188966 [ CCAAAGAAATTATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAGTATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACA ]
[-] EMBL CD063335 [ CACTGATATCTCCAAGACACGAAGCAATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGGAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCAACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAG ]
[-] EMBL CD063375 [ AATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACGGATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACTATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCTGTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCACCCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGACGACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACACATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAACAG ]
[+] EMBL CD142522 [ TTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCGACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCACAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCATATCGACTGTAACACCTCAATCCCCTCCTGTCTATAGTACAGATAAAAGTGGAATATCTGATTCTATGGATACACTGAGTACTGGGTTTATTATGCCACANATCTTTCCTACTG]
consensusID : consensus_10918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 716 fasta sequence
[ATCCATGAGCGTCGGTCGTTTAGGATTTTGACCAGCGGAATGCTGAGCAAATGAACCATTGGCTGACAAAATGTCAGGAACTGATGGATTCCAATGAGTTTGGACCTGATTTTTGTCGGTACCCCACTGATTAGTGGGCCACTGTTGACCACTTGCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG-TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAATTCCCAAAGCCAGTGATACGACCAGGTGGCTTTTGTTGGAAGGCTGGTGGATTTTTTTTGAGCGTGCTAGACTTTCGGAGATAATTGGACATTCCAGCCAGCTGGACGAGCTCTGCACTTATCTCTTGATTGGCTTCTACATAAAATCCACGACGCC]
[+] EMBL CD110816 [ATCCATGAGCGTCGGTCGTTTAGGATTTTGACCAGCGGAATGCTGAGCAAATGAACCATTGGCTGACAAAATGTCAGGAACTGATGGATTCCAATGAGTTTGGACCTGATTTTTGTCGGTACCCCACTGATTAGTGGGCCACTGTTGACCACTTGCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCCTAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTG ACGTTGTGAGATACTG ]
[+] EMBL CD187141 [ TGCTTCAGTTACTGTATTTGAATTTTGAATGATAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAGTCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTGAT ]
[+] EMBL CD187279 [ TGCTTCAGTTACTGTATTTGAATTTTGGATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGA ]
[+] EMBL CD187301 [ TGCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAA ]
[-] EMBL CD187042 [ GCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAAT ]
[-] EMBL CD186998 [ GCTTCAGTTACTGTATTTGAATTTTGAATGATAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCACTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGGCAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAAT ]
[-] EMBL CD186866 [ GCTTCAGTTACTGTATTTGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTTCTCTGTGCTGACATGCCTATCCCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGTCCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAAT ]
[+] EMBL CD138329 [ CCATTTCCCTGTCTCATTTACTGTGAGATTTACACAGCTAGGCACACTAGTCTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGTTGTGGTAGTCCTCCATAATTTGTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATNGAATTCCAGAGNNTGAC ATTCTAATATCTT ]
[+] EMBL CD138258 [ GACTGGTCGCTAGTAGCGGATTTGAACGTTGTGAGATACTGGCTAGTTGGCAAGTGAGGATTTTCGACAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGACATTCCAGAG GTGACAATTCTAATATCTTGTGTTGNGCAGC ]
[+] EMBL CD149151 [ GTTGGCAAGTGAGGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATTCCAGAG TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGATGAATTCCCAAAGCCAGTGATACGACCAGGTGGCTTTTGTTGGAAGGCTGGTGGATTTTTTTTGAGCGTGCTAGACTTTCGGAGATAATTGGACATTCCAGCCAGCTGGACGAGCTCTGCACTTATCTCTTGATTGGCTTCTACATAAAATCCACGACGCC]
consensusID : consensus_10918#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence
[AATTACTTCAATTGTAGTAATATATAAAAGATTGTGTACAAAAAGATAGTACAGGAAGAAGGAATTAGTTCGAAGAAAGAAAGGTATAAAGCAATTTTAATCCCACAGTTTAAGGGAAGACAAAGAGTGTATACACCTATGCCATTGTGATCGATTCTGAGCCATGTCACTCAGAGTCTCCAACCATTGGTTACGATGCCACGACGGACCGACTTGTCTAATTACTGGGCATTTATTGATTGAGGTATTATAGTGTAACCAAAAAACTCGATCCGACGCGGAATATTCGCTACCAGCGAACCTGTTTGGAGATCGTTTCTTTTTGAGATCATTAGGTGTTTTTACACGAGACATTACTAAAGGACATTGGTGAAACAGTAAACAACGACCTTCTGCTATACACCAACCGCAATAAGGATCACGAGCCTTCAACATGACTGACATGTTAAGTACGCTGAACAGTTGAATAACTCAATGCNGANNAC]
[+] EMBL CD192550 [AATTACTTCAATTGTAGTAATATATAAAAGATTGTGTACAAAAAGATAGTACAGGAAGAAGGAATTAGTTCGAAGAAAGAAAGGTATAAAGCAATTTTAATCCCACAGTTTAAGGGAAGACAAAGAGTGTATACACCTATGCCATTGTGATCGATTCTGAGCCATGTCACTCAGAGTCTCCAACCATTGGTTACGATGCCACGACGGACCGACTTGTCTAATTACTGGGCATTTATTGATTGAGGTATTATAGTGTAACCAAAAAACTCGATCCGACGCGGAATATTCGCTACCAGCGAACCTGTTTGGAGATCGTTTCTTTTTGAGATCATTAGGTGTTTTTACACGAGACATTACTAAAGGACATTGGTGAAACAGTAAACAACGACCTTCTGCTATACACCAACCGCAATAAGGATCACGAGCCTTCAACATGACTGACATGTTAAGTACGCTGAACAGTTGAATAACTCAATGCNGANNAC]
consensusID : consensus_10918#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence
[ATGAACANNGCTGAACTTTACGCATTCGACCCATTCCATGAGAAATCGAATTACANTTCCCAGTCCCGTTTGGCGAGAACGTATTGAGTCATGAAAGTCAGATTCGGGATACCAGTTACCTGGGAAAAATCGCACTTTGTGGGCGTGAACCCACGCAACGCTCAAACAACTTNTGGATATGAACTAGCGCACCAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTGATGCTATTCCCTCA]
[+] EMBL CD193015 [ATGAACANNGCTGAACTTTACGCATTCGACCCATTCCATGAGAAATCGAATTACANTTCCCAGTCCCGTTTGGCGAGAACGTATTGAGTCATGAAAGTCAGATTCGGGATACCAGTTACCTGGGAAAAATCGCACTTTGTGGGCGTGAACCCACGCAACGCTCAAACAACTTNTGGATATGAACTAGCGCACCAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAGAACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACGCGCTCACTAAAACAAGTCATTTTGATGCTATTCCCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10918#0 CTGGTTCAACACCTATGACACATCATAAAAATTGTGTTTCATTTACTACAACTGTTTCTG 60
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CCAGATTGTGGTTGATGGATTGCCCAACTGATATTCCAGTTACAGAGCTAGCAACTCGCA 120
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 TTTACAATGAAAGCATTGAACCACCAATTTTGGGAAGATTTGTTATTTATGCTCGTCAAT 180
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CGACCGATCTGGGTACAGAAGTCGAACTAGAAACGCTAGACAAATTACAAAAACAACTTC 240
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CTCATGCTCAAGATATGAAGAGAAGTATTTCACGCATCAAAAAGTTTTCAACCGAATTTG 300
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CTCAAATTAGATGCATCTGCCTGACAGACGACAACAATGATAAAACTCTGGAGTGTTTAG 360
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 AACATTACTGTCAAGTTGCAATCGGTCCATTTGTTGAGATTCAACAAAACAAGCCTGTCT 420
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 GGATTGAAATGGTTGGAAATCTGGTACCAGTGTTAA-GATCTGATGAACAGC--TGAACT 477
consensus_10918#3 -------------------------------------------ATGAACANNGCTGAACT 17
consensus_10918#1 -ATCCATGAGCGTCGGTCGTTTAGGATTTTGACCAGCGGAATGCTGAGCAAA--TGAACC 57
consensus_10918#2 ----------AATTACTTCAATTGTAGTAATATATAAAAGATTGTGTACAAAAAGATAGT 50
** ** *
consensus_10918#0 TTAC-CATTCG--ACC-ATTCCATGAGAA-TCGAATTACATT---CCCAGTCC-G---TT 525
consensus_10918#3 TTACGCATTCG--ACCCATTCCATGAGAAATCGAATTACANTT--CCCAGTCCCG---TT 70
consensus_10918#1 ATTGGCTGACA--AA--ATGTCAGGAACTGATGGATTCCAATGAGTTTGGACCTGATTTT 113
consensus_10918#2 ACAGGAAGAAGGAATTAGTTCGAAGAAAGAAAGGTATAAAGCAATTTTAATCCCACAGTT 110
* * * ** * * * ** **
consensus_10918#0 TG-CGAGA-CGTATTGAGTCATGA--GTCAGATTCGG------ATAC-AGTTACT--GGA 572
consensus_10918#3 TGGCGAGAACGTATTGAGTCATGAAAGTCAGATTCGGG-----ATACCAGTTACCTGGGA 125
consensus_10918#1 TGTCGGTACCCCACTGATTAGTGG--GCCACTGTTGACCACTTGCTTCAGTTACTGTATT 171
consensus_10918#2 TA-AGGGAAGACAAAGAGT-GTATACACCTATGCC--------ATTGTGATCGATTCTGA 160
* * * * ** * * * *
consensus_10918#0 AAAATCGCATTT---GTGCGTGAACC-ACGCAACGCTCAAACAACTTT-GGATATGA-CT 626
consensus_10918#3 AAAATCGCACTTTGTGGGCGTGAACCCACGCAACGCTCAAACAACTTNTGGATATGAACT 185
consensus_10918#1 TGAATTTTGAATGACAGGAATTGGTGCAGTTAATATAGAACTAACTTT---CTCTGTGCT 228
consensus_10918#2 GCCATGTCACTCAGAGTCTCCAACCATTGGTTACGATGCCACGACGGACCGACTTGT-CT 219
** * ** ** **
consensus_10918#0 AGCGCAC-AACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAG 685
consensus_10918#3 AGCGCACCAACCGCAACGTCCAATCACTCTATTAGAATTCAAGCTACCAAACCCAGATAG 245
consensus_10918#1 GACATGCCTATCCCATTTCCCTGTCTC---ATTTACTGTGAGATTTACACAGCTAGGCAC 285
consensus_10918#2 AAT-TACTGG--GCATTTATTGATTGAGGTATT-ATAGTGTAACCAAAAAACTCGATCCG 275
* ** * *** * * *
consensus_10918#0 AACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACG--CGCTCACTAAAACAAGT 743
consensus_10918#3 AACAATTGTGATATCTACAAGAGGCAATCGTCTGGCTGACG--CGCTCACTAAAACAAGT 303
consensus_10918#1 ACTAGT--------CTTCGAAAAGCTAGCTTTAATCTGAGAGTCATTTACAGGAATAGGT 337
consensus_10918#2 ACGCGG---AATATTCGCTACCAGCGAAC--CTGTTTGGAGATCGTTT-CTTTTTGAGAT 329
* * * ** * * ** * * * * *
consensus_10918#0 CATTNTGATGCTATTCCCTCAAGTGTGACTGATGTACACCCAGTAACGACGAAAGAAGAA 803
consensus_10918#3 CATTTTGATGCTATTCCCTCA--------------------------------------- 324
consensus_10918#1 TGTGGTAGTCCTCCATAATTT-GTCTGACTACTAAGAGTGGGTTTGCGACCACTAATGGA 396
consensus_10918#2 CATTA-GGTGTTTTTACACGAGACATTACTAAAGGACATTGGTGAAACAGTAAACAACGA 388
* * *
consensus_10918#0 ATAACTGCAA----CTGACGTCTTCGAGGAACGACCTGTCCTGCC---ATTGCCTACCAA 856
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 CTGGTCGCTA----GTAGCGGATTTGAACGTTGTGAGATACTGGCT-AGTTGGCAAGTGA 451
consensus_10918#2 CCTTCTGCTATACACCAACCGCAATAAGGATCACGAGCCTTCAACATGACTGACATGTTA 448
consensus_10918#0 AGAAATT--ATACCAAAAGTAACATTAGACGAAGCACTGATATCTCCAAGACACGAAGCA 914
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 GGATTTTCGGCAGCTGAATTAATTTTATTCATAGCAGATGAACCATTTTGATATGAAATT 511
consensus_10918#2 AGTACGCTGAACAGTTGAATAACTCAATGCNGANNAC----------------------- 485
consensus_10918#0 ATAGATAGTTCTTTAGACATGAAATATCAAAAAGTGGAAGAAAAGAGAAAACTAGAAACG 974
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 CCAGAG-----TTGACAATTCTAATATCTTGTGTTGGGAAGCTTGAAGAT----GAATTC 562
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 GATACAATGTTTTCTTGGTCTGAAAATACATTTCTTTCGTCAGATGAAGGTGTTTCGACT 1034
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 CCAAAGCCAGTGATACGACCAGGTGGCTTTTGTTGGAAGGCTGGTGGATTTTTTTTGAGC 622
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 ATTTCGGCTTCTGGTGAAACAGATGGTATTCGTAAACCAGAAGCAACAGTTTTACAGTCT 1094
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 GTGCTAGACTTTCGGAGATAATTGGACATTCC--AGCCAGCTGGACGAGCTCTGCACT-T 679
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 GTTTCTCAGGCTGATGTCACAGACCAAGAAAAACTTCCTGTTGATGTTCATACTGTTCCA 1154
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ATCTCTTGATTGGCTTCTACATAAAATCCACGACGCC----------------------- 716
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 ACCATGTTTAATTCATTTGAAAATACACCAGATCAAGTATTAGTGTCAAGTCACTATGAC 1214
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 GACCTCAATGATATCACTGAAGAAAAACCTCGTGTTCACTGGCAAGAAGCTTTGCTAACA 1274
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CATTTGGAATCAGTTGGTGTTAGTTTAGATTTGCCAACAAAGTTCAGCCAGTTAGCAGGC 1334
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 AAGGAAGTCGAAGAACAAGATAGTCATATGACGGGAGTTTTCATAAAACCAATATCTCAA 1394
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CATGTTGATCATAAATCTACTTCAACTGACAGAAACCAGATAAAATATGTTGTACAGGAA 1454
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 TTAATAGATACCATTGGACCACAATTCGTTGATACTGCTTCAGTTGAACAGCTACTGCCG 1514
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 ACTGGTCGTGAAGAAATAATGGAAGATATAATTGAACCTAGAACATTTGATCGTAAGGCA 1574
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CAGACAATCTCAGTTTTGAAGGATTCTCAAGGAGTTAGAACCATATCGACTGTAACACCT 1634
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 CAATCCCCTCCTGTCTATAGTACAGATAAAAGTGGAATATCTGATTCTATGGATACACTG 1694
consensus_10918#3 ------------------------------------------------------------
consensus_10918#1 ------------------------------------------------------------
consensus_10918#2 ------------------------------------------------------------
consensus_10918#0 AGTACTGGGTTTATTATGCCACANATCTTTCCTACTG 1731
consensus_10918#3 -------------------------------------
consensus_10918#1 -------------------------------------
consensus_10918#2 -------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||