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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1653 fasta sequence
[CTCTACAAATAGAGAAACGCTCATATGAGCACATGTGCACACATCACCGCTAATTAACAATCAGAAAAGAAACAATTAGTGACTAAAATTATATACTCATCAGAACGACAATAATAATCATTGAGTGATAAGAACGCATGTAGTGTTAGTGTAACAATAAAGATGAATTTGACTGTCATATTAGTTAAATGTTTCATTGAATTTTGTTTGTTTTGTTTCCTATTTACGGAGAAAAATGGTCATGACAACAGAGTAGAAGGTGTAAAATGAGTAAACACAGCTAGCAACCATATAACGTTAGCTCTTTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAGCTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACGACGTAACGAAACTCATTTGTACACTCATACACCATGATGATGAAAATACCGAAATCAAAGATCAAGTTATCGTTGAAAAAAAGACGAGTATGAAATAATAAATGGTAGTAAGTACAAGAATGGAGGGCACCAATAGACGTGCTGTTTAATAGAAAGTACCTCTACTGTTGTTATTTATTTAATAAGAAATGGTATAGAAGTATTAAAGTTGGTTAACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCCACCAACAGAATTCAATATAAATCCACCATCAGGTCCAGCGGTAGCTAAAGTAGCAGTACATGATCGATCCAATTCACCTGTTGGTGTAACAAAAGCAACTGAAGTTTGTCTGAGCTGCTTCACCATGATGA]
[+] EMBL CD063232 [CTCTACAAATAGAGAAACGCTCATATGAGCACATGTGCACACATCACCGCTAATTAACAATCAGAAAAGAAACAATTAGTGACTAAAATTATATACTCATCAGAACGACAATAATAATCATTGAGTGATAAGAACGCATGTAGTGTTAGTGTAACAATAAAGATGAATTTGACTGTCATATTAGTTAAATGTTTCATTGAATTTTGTTTGTTTTGTTTCCTATTTACGGAGAAAAATGGTCATGACAACAGAGTAGAAGGTGTAAAATGAGTAAACACAGCTAGCAACCATATAACGTTAGCTCTTTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAGCTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACGA ]
[-] EMBL CD096468 [ ACACAGCTAGCAACCATATAACGTTAGCTCTNTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAGCTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACGACGTAACGAAACTCATTTGTACACTCATACACCATGATGATGAAAATACCGAAATCAAAGATCAAGTTATCGTTGAAAAAAAGACGAGTATGAAATAATAAATGGTAGTAAGTACAAGAATGGAGGGCACCAATAGACGTGCTGTTTAATAGAAAGTACCTCTACTGTTGTTATTTATTTAATAAGAAATGGTATAGAAGTATTAAAGTTGGTTAACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGA ]
[-] EMBL CD135305 [ TATTTAATAAGAAATGGTATAGAAGTATTAAAGTTGGTTAACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGCAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAGCTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTG ]
[-] EMBL CD199321 [ TAAGAAATGGTATAGAAGTATTAGAGTTGGTTCACACAATTAATTTTACTGTGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGA ]
[-] EMBL CD135352 [ GTCATCAAACGGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGAc ]
[-] EMBL CD183056 [ GAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTAAGATCTTTCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGAATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTTAGTGGGTGTAGATTAAGGACCACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGA ]
[+] EMBL CD178764 [ TTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTAACTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGC ]
[+] EMBL CD163851 [ TTAGATGTTGAGTTTGGTAGACTGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAA CAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGAT ]
[-] EMBL CD183656 [ GTAGCGTTAATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTGTTGTTGACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAGAATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAGAAGTTAACAGTTGTGAAGCCTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTA ]
[+] EMBL CD114103 [ CAAACGCAATATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATGACCCACTAAATGTGCAGCTGAATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAAAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCCACCAACAGAATTCAATATAAATCCACCATCAGGTCCAGCGGTAGCTAAAGTAGCAGTACATGATCGATCCAATTCACCTGTTGGTGTAACAAAAGCAACTGAAGTTTGTCTGAGCTGCTTCACCATGATGA]
[-] EMBL CD163789 [ GATGACCCACTAAATGTGCAGCTGAATGGTGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCCACCAACAGAATTCAATATAAATCCACCATCAGGTg ]
[-] EMBL CD181200 [ AATGTGCAGCTGTATGATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACTGTTGTCCAGGTTCTAGAGTGAGTCGA ]
consensusID : consensus_10919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1143 fasta sequence
[TTAAAAGAAACAGGGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATTAAGCAGAAAGAATTAAGGAAAGAGAGAAAATTAACATGTAAGATTCATATTGACAGTTACATTTATAAGTGTATATGCTTCAATATATATATGCGTGTGTAACGGGTGGAGGGGGGGAGTAAACAAACACTCCTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTAAGACTTGCTCATTTCACAGCATCGACACGACGCACGATGAATAATTCGCCCAAAGTAGGATTGCTGAAGAGTAGTAGTAGTATTAGCAGTAGTAGTAGGCGTACCTAAATATTTTTAGCAAAGCATAATGCAGTACGGAGGCGGCAGTATACTCAACTTGTATGTGTGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGTGATGTGTGCACATGTGCTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCAACCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCATCATTAATCCATATTGTGTATTGTATAANAAACAAACTAATATACTTTTTTTTTCTCATTTTATTTCATTAATTTAAAACTTTTCGTTTATTA]
[+] EMBL CD132672 [TTAAAAGAAACAGGGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATTAAGCAGAAAGAATTAAGGAAAGAGAGAAAATTAACATGTAAGATTCATATTGACAGTTACATTTATAAGTGTATATGCTTCAATATATATATGCGTGTGTAACGGGTGGAGGGGGGGAGTAAACAAACACTCCTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTAAGACTTGCTCATTTCACAGCATCGACACGACGCACGATGAA ]
[-] EMBL CD082951 [ GGGGGAGTAAACAAACACTCNTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTAAGACTTGCTCATTTCACAGCATCGACACGACGCACGATGAATAATTCGCCCAAAGTAGGATTGCTGAAGAGTAGTAGTAGTATTAGCAGTAGTAGTAGGCGTACCTAAATATTTTTAGCAAAGCATAATGCAGTACGGAGGCGGCAGTATACTCAACTTGTATGTGTGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTcct ]
[+] EMBL CD096133 [ TGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGTGATGTGTGCACATGTGCTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCAACCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCATCATTAATCCATATTGTGTATTGTATAANAAACAAACTAATATACTTTTTTTTTCTCATTTTATTTCATTAATTTAAAACTTTTCGTTTATTA]
[+] EMBL CD096128 [ TGCATATACGTTTGAATATGCACAAGTTTATTTATGATTAGCAAAAATATAGAGAATAACTAAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAAAACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAAAAAGGAATACTGTTAATTTGTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAGAGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACATAATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGTGATGTGTGCACATGTGCTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCAACCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCATCATTAATCCATATTGTGTATTGTATAAAAAACAAACTAATATACTTTNTTTTTCTCATTNTATTTCATTAATTTAA ]
consensusID : consensus_10919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1061 fasta sequence
[GTGTATATTACAGT-CAATA-TA-TA-TAAT-ATTG-AAT-AACGAGT-ATCATA-AAG-TTTCG-TTG-TTTTTTTC-TAAATCAGTGC-ACAAAAAAACGTGGAGNAAGNAATATTTGATCGGTCAATGATTAAATGGGGGTAGTAGTAGTATGAGTAGTAGTTAAGAGAGATTATTCTCGAAAGGGGGTGTGTTTTATACTCATTAAAAAGGGGAAGAGTGAAGAATCAATAGTAATTATAGTACCAATAATAATAATAGTAATAGTATTAGTTGTTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATAATAATA--ATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACCTGTATTTGAGCAAGAGGATAGTACACATGATAGTATTAAGGAAATAGATTGAATTCATGTGTTTGTGAAAAAAAAGAAGGCAACCAATTTGAGTTCATATATATAGATTGTTAATAATCACCATAGTTATTATAAAATTAATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACA-GGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATNTAAGCAGACGCTCGTGCCGAATTATTG]
[-] EMBL CD081659 [GTGTATATTACAGT CAATA TA TA TAAT ATTG AAT AACGAGT ATCATA AAG TTTCG TTG TTTTTTTC TAAATCAGTGC ACAAAAAAACGTGGAGNAAGNAATATTTGATCGGTCAATGATTAAATGGGGGTAGTAGTAGTATGAGTAGTAGTTAAGAGAGATTATTCTCGAAAGGGGGTGTGTTTTATACTCATTAAAAAGGGGAAGAGTGAAGAATCAATAGTAATTATAGTACCAATAATAATAATAGTAATAGTATTAGTTGTTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATAATAATA ATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACCTGTATTTGAGCAAGAGGATAGTACACATGATAGTATTAAGGAAATAGATTGAATTCATGTGTTTGTGAAAAAAAAGAAGGCAACCAATTTGAGTTCATATATATAGATTGTTAATAATCACCATAGTTATTATAAAATTAATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACA GGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACAACTGGGAATATTGGTAATCAGATGATNTAAGCAGACGCTCGTGCCGAATTATTG]
[+] EMBL CD076536 [ AGTACAATATTATTATTAATAATTGAAATAAACGAGTAATCATAGAAGTTTTCGTTTGTTTTTTTTCTTAATTCAGTGCAACAAAAAAACTGGGAGGAAGAAATTATTGATCGGTCAATGATTAAATGGGGGTAGTAGTAGTATGAGTAGTAGTTAAGAGAGATTTATCTCGAAAGGGGGTGTGTTTTATACTCATTAAAAAGGGGAAGAGTGAAGAATCAATGGTAATTATAGTAACAATAATAATAATAGTAATAGTATTAGTTGTTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATAATAATA ATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACCTG ]
[-] EMBL AI882667 [ ATAGTATTAGTGGTTGTAATAATAGTAGTGAAACGAAAGTTGTTTACCTCAGAGCAGCAGTAATAATAATCATTATCATTGTAATCATCATATCATAATAATAAGATTGGTAAGTAATAGGTAGTTAACCAATTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATCAGGTATAAGAG ]
[-] EMBL CD077691 [ TAGGTAGT ACCAATTCA TTTCAATCTG TTTCCATTTAT CACCCCTTCACTCACTCACACACACATATATAGAGTTCCTCTTGTGAACCCATGGTAACTCATGAGCATACACACAAGAAGGGTATAAAGTATAAGAGTCTAAAAATTAAATCAACTACTTTAGCCAAATATGAATCCATTGTGTTTATGTGAGTATTCATTCAAATGATTGAACATTGAACAACAGGTATATATTGACACATTGAATACATAGATATATACC ]
[-] EMBL CD077501 [ TTGAGTTCATATATATAGATTGTTAATAATCACCATAGTTATTATAAAATTAATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACAGGGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTG ]
[-] EMBL CD077722 [ acTAAAAGAAACA GGGGGGGGAACTATTACACAACTGATAAAAACAAAATGAAGATAGAAAGAAGAATGAATAACCAAAAAATACTCAATGATGTCTAGTTTACATGTATTGATAATGTGAATATACACAAACTAACACACACGTACATACATAAGCAGCTTC ]
consensusID : consensus_10919#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 515 fasta sequence
[ACTTTCATGAAGGTTTAATATATAAGCCTTTTTGTTACCCCTCTGGCTCTCTCTCTCTCATGCAAATATATACATAGATATACATATTTGTACAGTGTGTTGTTGTCCGGACTCGAAGCATGAGATTTGCTATTGTTCTATACTTTCTCTCCATCTGTCTGTCTGTCTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTTGTTTTTTTTTAATGAGTGTTTGAAAATACTACTGATCTATTTTATCTATGTGTATGTTTGTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAATTTCTTCTTTTATGTATGTGTGTGTATTCACCAGTGCCAGTGCTTTTTCTTCCTCTTTTGGCTTAGTTTCCTTATTTTTTTAAAAGAAAAAACAAATTAACAGTATTCCTTTTTTTGGCTAACGAATTTATGATTTCACTCAGCAACTAAGTTGTTGTTGATTAATTATGTTTTTTT]
[-] EMBL CD065527 [ACTTTCATGAAGGTTTAATATATAAGCCTTTTTGTTACCCCTCTGGCTCTCTCTCTCTCATGCAAATATATACATAGATATACATATTTGTACAGTGTGTTGTTGTCCGGACTCGAAGCATGAGATTTGCTATTGTTCTATACTTTCTCTCCATCTGTCTGTCTGTCTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTTGTTTTTTTTTAATGAGTGTTTGAAAATACTACTGATCTATTTTATCTATGTGTATGTTTGTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAATTTCTTCTTTTATGTATGTGTGTGTATTCACCAGTGCCAGTGCTTTTTCTTCCTCTTTTGGCTTAGTTTCCTTATTTTTTTAAAAGAAAAAACAAATTAACAGTATTCCTTTTTTTGGCTAACGAATTTATGATTTCACTCAGCAACTAAGTTGTTGTTGATTAATTATGTTTTTTT]
[+] EMBL CD169583 [ TTGTACAGTGTGTTGTTGTCCGGACTCGAAGCATGAGATTTGCTATTGTTCTATACTTTCTCTCCATCTGTCTGTCTGTCTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTTGTTTTTTTTTAATGAGTGTTTGAAAATACTACTGATCTATTTTATCTATGTGTATGTTTGTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAATTTCTTCTTTTATGTATGTGTGTGTA ]
consensusID : consensus_10919#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[TAGAGTATACCATGCACTCATCGGGATCCATCGGGAATGAGAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTACCTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACAGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTCATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTG]
[+] EMBL CD061826 [TAGAGTATACCATGCACTCATCGGGATCCATCGGGAATGAGAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGCAGTGATAGCACCCAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAGAGCGCATGAATCTGTATGATCTTCCATAACAGCGGAAGAAGCAACAGGACAGAGATGTGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGAGTTACCTGACTCATTTGTATTAGATGTTGAGTTTGGTAGACAGGATGTTGCATTAACAGGTGGTGTATGTACTATAGGTACAAGCATTGCTGTTTGCTGTTGAGTGGGTGTAGATGAGGGACGACCTGGTAAAACACCTGTAGCGTTCATTGGCCTATGATAATGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGACGATTGAAGTACCGATTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10919#0 CTCTACAAATAGAGAAACGCTCATATGAGCACATGTGCACACATCACCGCTAATTAACAA 60
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 TCAGAAAAGAAACAATTAGTGACTAAAATTATATACTCATCAGAACGACAATAATAATCA 120
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 TTGAGTGATAAGAACGCATGTAGTGTTAGTGTAACAATAAAGATGAATTTGACTGTCATA 180
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 TTAGTTAAATGTTTCATTGAATTTTGTTTGTTTTGTTTCCTATTTACGGAGAAAAATGGT 240
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 CATGACAACAGAGTAGAAGGTGTAAAATGAGTAAACACAGCTAGCAACCATATAACGTTA 300
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 GCTCTTTTATTCAAGTAGATATAGTAAGAAGAAGAAGAATTCGATATTAAACCAGACTAG 360
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 CTAATTAGGAAAATATAAAAGCAAATAACAATGACTAAACACGGAACATACACATACACG 420
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 ACGTAACGAAACTCATTTGTACACTCATACACCATGATGATGAAAATACCGAAATCAAAG 480
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 ------------------------------------------------------------
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 ATCAAGTTATCGTTGAAAAAAAGACGAGTATGAAATAATAAATGGTAGTAAGTACAAGAA 540
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 -----------------------------------------------TTAAAAGAAACAG 13
consensus_10919#2 -------------------------------GTGTATATTACAGTCAATATATATAATAT 29
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 TGGAGGGCACCAATAGACGTGCT-----GTTTAATAGAAAGTACCTCTACTGTTGTTATT 595
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 GGGGGGGGAACTATTACACAACT-----GATAAAAACAAAATGAAGATAGAAAGAAGAAT 68
consensus_10919#2 TGAATAACGAGTATCATAAAGTTTCGTTGTTTTTTTCTAAATCAGTGCACAAAAAAACGT 89
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 T-ATTTAATAAGAAATGGTATAG-AAGTATTAAAGTTGGTTAACACAATTAATTTTACTG 653
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 G-AATAACCAAAAAATACTCAAT-GATGTCTA--GTTTACATGTATTGATAATGTGAATA 124
consensus_10919#2 GGAGNAAGNAATATTTGATCGGTCAATGATTA---AATGGGGGTAGTAGTAGTATGAGTA 146
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 TGAATAAACATACACAACACAAAGTACTGAATTAAGAACACGTAAACAATGTCATCAAAC 713
consensus_10919#4 ---------------------------TAGAGTAT-ACCATGCACTCATCGGGATCCATC 32
consensus_10919#1 TACACAAACTAACACACACGTACATACATAAGCAGCTTCATGTAAACATGAATGAGGAAG 184
consensus_10919#2 GTAGTTAAGAGAGATTATTCTCGAAAGGGGGTGTGTTTTATACTCAT-TAAAAAGGGGAA 205
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 GGAATGAGAAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGC--AG 771
consensus_10919#4 GGGAATGAGAACAAAAATGAAACTAACTATAAACTTGTTTCTGGTACTGAGACAGC--AG 90
consensus_10919#1 GGGGGAGGAGAGGAAAAAGA---CAACTGGGAATAT-----TGGTAATCAGATGATTAAG 236
consensus_10919#2 GAGTGAAGAATCAATAGTAATTATAGTACCAATAATAATAATAGTAATAGTATTAGT-TG 264
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 TGATAGCACC--CAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAG 829
consensus_10919#4 TGATAGCACC--CAGAGAAGAGGAGTTTGATAGAACAGAAGAAGGACGAGAATTGGTAAG 148
consensus_10919#1 CAGAAAGAAT--TAAGGAAAGAGAGAAAATTAACATGTAAGATTCAT----ATTGACAGT 290
consensus_10919#2 TTGTAATAATAGTAGTGAAACGAACGTTGTTTACCTCAGAGCAGCAGTAATAATAATCAT 324
consensus_10919#3 -------ACTTTCATGAAGGTTTAATATATAAGCCTTTTTGTTACCCCTCTGGCTCTC-T 52
* * * * *
consensus_10919#0 AGCGCATGAATCTGTATGATCTTCCATA-ACAGCGGAAGAAGCAACAGGACA--GAGATG 886
consensus_10919#4 AGCGCATGAATCTGTATGATCTTCCATA-ACAGCGGAAGAAGCAACAGGACA--GAGATG 205
consensus_10919#1 TACATTTATAAGTGTATATGCTTCAATATATATATGCGTGTGTAACGGGTGG--AGGGGG 348
consensus_10919#2 TATCATTGTAATAATAATAATAATAATA---AGATTGGTAAGTAATAGGTAGTTAACCAA 381
consensus_10919#3 CTCTCTCATGCAAATATATACATAGATA--TACATATTTGTACAGTGTGTTGTTGTCCGG 110
** *** * * *
consensus_10919#0 TGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGA 946
consensus_10919#4 TGAGGAAGCAAATGTTAAAAATGTGCCACTAACAGGCCATGTTGTTGTTAGAGGAGTTGA 265
consensus_10919#1 GGAGTAAACAAACACTCCTACAATAATTCTGATAAAGATTTTTCCCCTCAAAAATATCTA 408
consensus_10919#2 TTCATTTTCAATCTGTTTTCCATTTATCCACCCCTTCACTCACTCACACACACATATATA 441
consensus_10919#3 ACTCGAAGCATGAGATTTGCTATTGTTCTATAC-----TTTCTCTCCATCTGTCTGTCTG 165
** * * * *
consensus_10919#0 GTTAACTGACTCATTT-GTATTA--GATGTTGAGTTTGGTAGACTGGATGTTGCATTAAC 1003
consensus_10919#4 GTTACCTGACTCATTT-GTATTA--GATGTTGAGTTTGGTAGACAGGATGTTGCATTAAC 322
consensus_10919#1 A--GACTTGCTCATTTCACAGCATCGACACGACGCACGATGAATAATTCGCCCAAAGTAG 466
consensus_10919#2 G---AGTTCCTCTTGT-GAACC-----CATGGTAACTCATGAGCA-TACACACAAGAAGG 491
consensus_10919#3 T-----CTGTCTGTTTGGAACCACTGCTAATTTAGTCCGTTTTAATTTTGTCTGATCTTT 220
* * * * *
consensus_10919#0 AGGTGGTGTAT-GTACTAT----AGGTACAAG--CATTGCTGTTTGCTGT---TGAGTGG 1053
consensus_10919#4 AGGTGGTGTAT-GTACTAT----AGGTACAAG--CATTGCTGTTTGCTGT---TGAGTGG 372
consensus_10919#1 GATTGCTGAAGAGTAGTAG----TAGTATTAG--CAGTAGTAGTAGGCGTACCTAAATAT 520
consensus_10919#2 GTATAAAGTATAAGAGTCT----AAAAATTAAATCAACTACTTTAGCCAAATATGAATCC 547
consensus_10919#3 GTTTTTTTTTAATGAGTGTTTGAAAATACTAC-TGATCTATTTTATCTATGTGTATGTTT 279
* * * * * * * * *
consensus_10919#0 GTGTAGATGAGGGACG-ACCTGGTA---AAACACCTGTAGCGTTAATTGGCCTATGATAA 1109
consensus_10919#4 GTGTAGATGAGGGACG-ACCTGGTA---AAACACCTGTAGCGTTCATTGGCCTATGATAA 428
consensus_10919#1 TTTTAG-CAAAGCATA-ATGCAGTACGGAGGCGGCAGTATACTCAACTTGTATGTGTGCA 578
consensus_10919#2 ATTGTGTTTATGTGAGTATTCATTC---AAATGATTGAACATTGAAC-AACAGGTATATA 603
consensus_10919#3 GTTTACACAAAATGCAGATATGTGACCAGAATAAAAAGAAACAGGACCCGATTATGTAAT 339
* * * * * *
consensus_10919#0 TGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGAC-GATTGAAGTACCGATTGTT-GTT 1167
consensus_10919#4 TGTAATAACTGAGAAGGAGCTGTAGCCTCCGTAGAC-GATTGAAGTACCGATTG------ 481
consensus_10919#1 TATA-CGTTTGAATATGCACAAGTTTATTTATGATT-AGCAAAAATATAGAGAATA-ACT 635
consensus_10919#2 TTGACACATTGAATACATAGATATATACCTGTATTTGAGCAAGAGGATAGTACACATGAT 663
consensus_10919#3 TTCTTCTTTTATGTATGTG--TGTGTATTCACCAGT--GCCAGTGCTT-----------T 384
* * *
consensus_10919#0 GACTAGACAAACTGGAGTGAGGAACGGAAACAGGAGGAGGAAAAATAACTGTTGCAGGAG 1227
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 AAATTGATGTAAAGGGTGGGGGTGTATAGCGCAGAAAAAAGAACTTTGATGGAGAAAAAA 695
consensus_10919#2 AGTATTAAGGAAATAGATTGAATTCATGTGTTTGTGAAAAAAA---------AGAAGGCA 714
consensus_10919#3 TTCTTCCTCTTTTGGCTTAGTTTCCTTATTTTTTTAAAAGAAA-----------AAACAA 433
consensus_10919#0 AATGACCACTGTGAATTGCTGCCTGATTGGGTGCTGTATTAGGAAATATAGTTGAACCAG 1287
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 AACATAATTAATCAACAACAACTTAGTTGCTGAGTGAAATCATAAATTCGTTAGCCAAAA 755
consensus_10919#2 ACCAATTTGAGTTCAT-ATATATAGATTGTTAATAATCACCATAG--TTATTATAAAATT 771
consensus_10919#3 ATTAACAGTATTCC-------TTTTTTTGGCTAACGAATTTATGATTTCACTCAGCAACT 486
consensus_10919#0 AAGTTAACAGTTGTGAAGC--CTGATGGCCATGAGTTGGTATATTAGTTGCAAACGCAAT 1345
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 AAAGGAATACTGTTAATTT--GTTTTTTCTTTTAAAAAAATAAGGAAACTAAGCCAAAAG 813
consensus_10919#2 AATTGAACTACGATAACCCTGGTAACAGCACTTAAAAGAAACAGGGGGGGGAACTATTAC 831
consensus_10919#3 AAGTTGTTGTTGATTAATTATGTTTTTTT------------------------------- 515
consensus_10919#0 ATGTGTTGCTTGCCCCGACTGCAAATGAACCTGATG-ACCCACTAAATGTGCAGCTGAAT 1404
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 AGGAAGAAAAAGCACTGGCACTGGTGAATACACACACATACATAAAAGAAGAAATTACAT 873
consensus_10919#2 ACAACTGATAAAAAC--AAAATGAAG-ATAGAAAGAAGAATGAATAACCAAAAAATACTC 888
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 GATGTGGATTAATAATTGTTCCCTGTGGGTGAGAAGTGGGAATAGAAGTTAGAGTAAACT 1464
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 AATCGGGTCCTGTTTCTTTTTATTCTGATTGTTAATTAGCGGT-GATGTGTGCACATGTG 932
consensus_10919#2 AATGATGTCTAGTTTACATGTATTGATAATGTGAATATACA-CAAACTAACACACACGTA 947
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 GTTGTCCAGGTTCTAGAGTGAGTCGAGGATCCAGCGGTTCCAAATAGACAGTATCTCC-A 1523
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 CTCATATGAGCGTTTCTCTATTTGTGTGTTTGTCTATACATCATGTAAACTAAATGCA-A 991
consensus_10919#2 CATACATAAGCAGCTTCATGTAAACATGAATGAGGAAGGGGGGAGGAGAGGAAAAAGACA 1007
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 CCAACAGAATTCAATATAAATCCACCATCAGGTCCAGCGGTAGCTAAAGTAGCAGTACAT 1583
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 CCTGGATGAATATGTAGATATAAGGAAACATTTTTTGCTTTTCCCCCTACATTATTTCAT 1051
consensus_10919#2 ACTGG--GAATAT-TGGTAATCAGATGATNTAAGCAGACGCTCGTGCCGAATTATTG--- 1061
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 GATCGATCCAATTCACCTGTTG-GTGTAACAAAAGCAACTGAAGTTTGTCTGAGCTGCTT 1642
consensus_10919#4 ------------------------------------------------------------
consensus_10919#1 CATTAATCCATATTGTGTATTGTATAANAAACAAACTAATATACTTTTTTTTTCTCATTT 1111
consensus_10919#2 ------------------------------------------------------------
consensus_10919#3 ------------------------------------------------------------
consensus_10919#0 CACCATGATGA--------------------- 1653
consensus_10919#4 --------------------------------
consensus_10919#1 TATTTCATTAATTTAAAACTTTTCGTTTATTA 1143
consensus_10919#2 --------------------------------
consensus_10919#3 --------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||