cluster # 10931

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Schistosoma mansoni
cluster # 10931 cluster # 10931 Sequences # 25 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_10931#0 length = 1039 sequences # 16
consensus_10931#1 length = 525 sequences # 2

consensus_10931#2 length = 510 sequences # 1
consensus_10931#3 length = 331 sequences # 6

consensusID : consensus_10931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1039
fasta sequence

                              [TGGTAGGTGAAATAGGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA-GAAGAATTTCA-GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT-AATGGA-TTTTTAGCATTTGACCGAG--ATCTAGCATCT-GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT-TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACAACAAAACCTTCCTAGCAACCCAAGACCACAAACCATATAATCCTATCGAAAGTCGACGAATTTCTGAAGCTGGTGGCAAAGTTATGTTGTCTCGCGTTAATGGATCCTTAGCTGTTTCAAGATCTCTGGGTGACTTCGAATACAAACAGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTGTTGAACG-C-AAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGAATTAGATACCTCCTTAAACAATATGATTGTTGATATAATTAAT]

[+] EMBL CD127764             [TGGTAGGTGAAATAGGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGCGGTGATTCAAGAGCGATACTTATTCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CD180901             [                                     ATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTCTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CD179144             [                                             GTGGTGAACCCTGCTGGTTCACGCTGTATTATGTGCTTATGGGGGCCTCCTTGGAAAAACCCATAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATAGGCCATTTCAAGCATGCAAGGATGGCGATTAGAGATGTAAGATGCCCATGTGGCAAAGTCCGGTCTTCACAGTCCTTTCCAATACTGACCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGATGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGGTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATATAGCATGT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCTTCTTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATGCTTATTCGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CD161356             [                                              TGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAGGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACAACAAAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AI976006             [                                                 TGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGTGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACAACAGAACCTTNCTAGCAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BF440125             [                                                         GCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGCCCGAACTT CCAGCCCTTTCCAATACTGGTCGTATTTCGGTGTCTTTGATGGTCATGCAGGATCTCGTGTCTAAGAGCTTTGTGCAGCAAAGTTGCTAGATGCTATTCTTAACACAGGACGACTTTCAGGAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATTCAATGGATTTTTTAGCATTTGACCGAGGCATCCAGCATCTGGATGCATCCGcaaccc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CD188309             [                                                                              TGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTNAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACAACAAAACCTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD078047             [                                                                                                                                          gaggCGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAANAATCGGGATCTACAGCAGTAATTGCCT TTGTTACAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD111302             [                                                                                                                                                    TCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA CTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD180804             [                                                                                                                                                                                                                                           ATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGATGCTATTCTTAACACA GAAGAATTTCA GAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAAGGCATCATT AATGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGGGCGATACTTATTCGCGACAACAAAACCTTCCTAGCAACCCAAGACCACAAACCATATAATCCTATCGAAAGTCGACGAATTTCTGAAGCTGGTGGCAAAGTTATGTTGTCTCGCGTTAATGGATCCTTAGCTGTTTCAAGATCTCTGGGTGACTTCGAATACAAACAGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTGTTGAACG C ANAAAGAATTTGATCAAG                                                                                                                                                                                                                                                                          ]
[-] EMBL CD202924             [                                                                                                                                                                                                                                                                                                                                                                                                                TGGA TTTTTAGCATTTGACCGAG  ATCTAGCATCT GATGATTCCGATGAAAAATCGGGACCTACAGCAGTAATTGCCT TTGTTACACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACAACAAAACCTTCCTAGCAACCCAAGACCACAAACCATATAATCCTATCGAAAGTCGACGAATTTCTGAAGCTGGTGGCAAAGTTATGTTGTCTCGCGTTAATGGATCCTTAGCTGTTTCAAGATCTCTGGGTGACTTCGAATACAAACAGGT                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL SM502                [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AAAACCTTCCTAGCAACCCAAGACCACAAACCATAT ATCCTATCGAAAGTCGACGAATTTCTGAAGCTGGTGGCAAAGTTATGTTGTCTC                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD181952             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TTTCAAGATCTCTGGGTGACTTCGAATACAAACAGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTGTTGAACG CAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCC                                                                                 ]
[+] EMBL AI067092             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTGTTGAACG CAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGAATTAGATACCT                                ]
[+] EMBL CD170201             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGAACCAGATATATTCATTGTTGAACGTA AAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGAATTAGATACTTCCTTAAACAATATGATTGTTGATATAATTAAT]
[-] EMBL CD182124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     AATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCC                                                                                ]




>consensus_10931#0
TGGTAGGTGAAATAGGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCT
GGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAG
TAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGC
GATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACT
GGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAG
CCAAGTTGCTAGATGCTATTCTTAACACAGAAGAATTTCAGAAGCTTAGTTTTGATAAAG
AGCTTGATACAACTTTGGTCAAGAAAGGCATCATTAATGGATTTTTAGCATTTGACCGAG
ATCTAGCATCTGATGATTCCGATGAAAAATCGGGATCTACAGCAGTAATTGCCTTTGTTA
CACCAACCCATATAATTATGGCAAATTGTGGTGATTCAAGAGCGATACTTATTCGCGACA
ACAAAACCTTCCTAGCAACCCAAGACCACAAACCATATAATCCTATCGAAAGTCGACGAA
TTTCTGAAGCTGGTGGCAAAGTTATGTTGTCTCGCGTTAATGGATCCTTAGCTGTTTCAA
GATCTCTGGGTGACTTCGAATACAAACAGGTGCTTAATCGTGGAGTGACAGAGCAGCTTG
TTTCTCCCGAACCAGATATATTCATTGTTGAACGCAAAAAGAATTTGATCAAGTTCTTCT
TCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCT
TCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTCGACACTAG
TTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCC
AACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGAATTAGATACCTCCTTAAACAATAT
GATTGTTGATATAATTAAT

consensusID : consensus_10931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 525
fasta sequence

                              [AGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTGTTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTATGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGTATTAGATACTTCCTTAAACAATATGATTGTTGACCTACCTTGAAGACTCTCGGTGAACAAATGAAGCATGAAGTTTCATATCTTCCTATCATACCAACCTGGACCTGTTTCTCATTATCCATTCACTCATTCATTCCATGAAATTTATTGTAAAGTACCCGATGTATTTAATTGGCAAATACAATACAATAGTACCGCTAAAAAAAAAAAAAAAA]

[+] EMBL AI067296             [AGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTGTTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTATGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATATGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGTATTAGATACTTCCTTAAACAATATGATTGTTGACCTACCTTGAA                                                                                                                                                                           ]
[-] EMBL AI395532             [                                                                                                                                                                                                                    AGTTTGCACAAAGGTAGTCGTGATAATATGAGTGTCCTCCT GTGGCATTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCAAAGAAATGGAATTAGATACTTCCTTAAACAATATGATTGTTGACCTACGTTGAGGACTCTCGGTGAACAAATGAAGCATGAAGTTTCATATCTTCCTATCATACCAACCTGGACCTGTTTCTCATTATCCATTCACTCATTCATTCCATGAAATTTATTGTAAAGTACCCGATGTATTTAATTGGCAAATACAATACAATAGTACCGCTAAAAAAAAAAAAAAAA]




>consensus_10931#1
AGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTG
TTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATG
TGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTT
TGGCGGATGTATGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATA
TGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCA
AAGAAATGGTATTAGATACTTCCTTAAACAATATGATTGTTGACCTACCTTGAAGACTCT
CGGTGAACAAATGAAGCATGAAGTTTCATATCTTCCTATCATACCAACCTGGACCTGTTT
CTCATTATCCATTCACTCATTCATTCCATGAAATTTATTGTAAAGTACCCGATGTATTTA
ATTGGCAAATACAATACAATAGTACCGCTAAAAAAAAAAAAAAAA

consensusID : consensus_10931#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 510
fasta sequence

                              [GCTTACTCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCATATATATTCATTGTTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACATCTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTTGACACTAGTTTGCAAAGAAATGGAATTAGATACTTCCTTAAACAATATGATTGTTGATATAATTAATTCAGCCGGCGAACATGCTTACTTTTTGAATGTGGATTATGTCGCCAGTGCAGTTAAAAGTATGAATCTTCCCAATTATCCTCCGGGTGGCTTCTACACCAAACGCGCTATGTATAGAACTTTTTCAATACTCATTTGCGACAGAATATAGTGTTCGCAAAAACGCAACTGGACGCTCAAAGTTAGCAAAAATTCCGTTTTTAACCCTCGTAATTAACGCCAAATGATCACTCATCTTACT]

[+] EMBL CD114225             [GCTTACTCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCATATATATTCATTGTTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTTTGAAAACGACATCTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGGCGGATGTTTGTTCAGAAATCCTTGACACTAGTTTGCAAAGAAATGGAATTAGATACTTCCTTAAACAATATGATTGTTGATATAATTAATTCAGCCGGCGAACATGCTTACTTTTTGAATGTGGATTATGTCGCCAGTGCAGTTAAAAGTATGAATCTTCCCAATTATCCTCCGGGTGGCTTCTACACCAAACGCGCTATGTATAGAACTTTTTCAATACTCATTTGCGACAGAATATAGTGTTCGCAAAAACGCAACTGGACGCTCAAAGTTAGCAAAAATTCCGTTTTTAACCCTCGTAATTAACGCCAAATGATCACTCATCTTACT]




>consensus_10931#2
GCTTACTCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCATATATATTCATTGTTGA
ACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATGTGTT
TGAAAACGACATCTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTTTGG
CGGATGTTTGTTCAGAAATCCTTGACACTAGTTTGCAAAGAAATGGAATTAGATACTTCC
TTAAACAATATGATTGTTGATATAATTAATTCAGCCGGCGAACATGCTTACTTTTTGAAT
GTGGATTATGTCGCCAGTGCAGTTAAAAGTATGAATCTTCCCAATTATCCTCCGGGTGGC
TTCTACACCAAACGCGCTATGTATAGAACTTTTTCAATACTCATTTGCGACAGAATATAG
TGTTCGCAAAAACGCAACTGGACGCTCAAAGTTAGCAAAAATTCCGTTTTTAACCCTCGT
AATTAACGCCAAATGATCACTCATCTTACT

consensusID : consensus_10931#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 331
fasta sequence

                              [TTATTAAACTTGTTCGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGCATGCTATTCTTAACACAG]

[+] EMBL CD111445             [TTATTAAACTTGTTCGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAGCCAAGTTGCTAGCATGCTATTCTTAACACAG]
[-] EMBL CD148780             [ TATTAAACTTGTTCGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGC                                        ]
[-] EMBL CD148777             [ TATTAAACTTGTTCGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGC                                        ]
[+] EMBL CD110863             [                                             GTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAG                                         ]
[+] EMBL CD111254             [                                             GTGTTGAACCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCTGAACTTCCCAGTCCTTTCCAATACTGGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAG                                         ]
[+] EMBL BF440124             [                                                        TGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAANTTCCCAGTCCTTT                                                                                                   ]




>consensus_10931#3
TTATTAAACTTGTTCGAAGGCCTATGTTACTGCTCTGATGGTTTGGTGTTGAACCCTGCT
GGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCTTGGAAAAACCCAAAACAGAAAAAG
TAGTTAACGTCGGGGAAGGAAACGGACTTCGATATGCCATTTCAAGCATGCAAGGATGGC
GATTAGAAATGGAAGATGCCCATGTAGCAAAGTCCGAACTTCCCAGTCCTTTCCAATACT
GGTCGTATTTCGGCGTCTTTGATGGTCATGCAGGATCTCGTGTCTCAGAGCTTTGTGCAG
CCAAGTTGCTAGCATGCTATTCTTAACACAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_10931#0      ------------------------------------------------------------
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      AGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATTG 60
consensus_10931#2      ----GCTTACTCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCATATATATTCATTG 56
                                                                                   

consensus_10931#0      -------------------TGGTAGGTGAAATAGGAAGGCCTATGTTACTGCTCTG-ATG 40
consensus_10931#3      -------------------TTATTAAACTTGTTCGAAGGCCTATGTTACTGCTCTG-ATG 40
consensus_10931#1      TTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATG 120
consensus_10931#2      TTGAACGCAAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATG 116
                                          *  *        *      ** * ** *     *  * ***

consensus_10931#0      -GTTTGGTGTTGAA---CCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCT 96
consensus_10931#3      -GTTTGGTGTTGAA---CCCTGCTGGTTGCCGCTTTCTTATGTGCTTATGGGTGCCTTCT 96
consensus_10931#1      TGTTTGAAAACGACA-CTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCT 179
consensus_10931#2      TGTTTGAAAACGACATCTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCT 176
                        *****     **     *   **   * *  * *** *  **  *  **  * ** ***

consensus_10931#0      TGGAAAAACCCAAAA-CAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATAT 155
consensus_10931#3      TGGAAAAACCCAAAA-CAGAAAAAGTAGTTAACGTCGGGGAAGGAAACGGACTTCGATAT 155
consensus_10931#1      TTGGCGGATGTATGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGT-GATAA 238
consensus_10931#2      TTGGCGGATGTTTGTTCAGAAATCCTTGACACTAGTTTGCAAAGAAATGGAATTAGATAC 236
                       * *    *        ******   * *  *       * *        *   * **** 

consensus_10931#0      GCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAA-AGTC 214
consensus_10931#3      GCCATTTCAAGCATGCAAGGATGGCGATTAGAAATGGAAGATGCCCATGTAGCAA-AGTC 214
consensus_10931#1      TATGAGT-GTCCTCCTGGTGGC-GTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTT 296
consensus_10931#2      TTCCTTA-AACAATATGATTGTTGATATAATTAATTCAGCCGGCGAACATGCTTACTTTT 295
                                              *  *               *   *           * 

consensus_10931#0      CGAACTTCC-CAGTCCTTTCCAATACTGGTCGTATTTCGG-CGTCTTTGATGGTCATGCA 272
consensus_10931#3      CGAACTTCC-CAGTCCTTTCCAATACTGGTCGTATTTCGG-CGTCTTTGATGGTCATGCA 272
consensus_10931#1      TGCAAAGAAATGGTATTAGATACTTCCTTAAACAATATGATTGTTGAC--CTACCTTGAA 354
consensus_10931#2      TGAATGTGGATTATGTC-GCCAGTGCAGTTAAAAGTATGAATCTTCCCAATTATCCTCCG 354
                        * *         *       * * *       * *  *    *          * *   

consensus_10931#0      GGATCTCGTGTCTCAGA----GCTTTGTGCAGCCAAGTTGCTAG--ATGCTATTCTTAAC 326
consensus_10931#3      GGATCTCGTGTCTCAGA----GCTTTGTGCAGCCAAGTTGCTAGC-ATGCTATTCTTAAC 327
consensus_10931#1      GACTCTCGGTGAACAAATGAAGCATGAAGTTTCATATCTTCCTATCATACCAACCTGGAC 414
consensus_10931#2      GGTGGCTTCTACACCAA--ACGCGCTATGTATAGAACTTTTTCA--ATACTCATTTGCGA 410
                       *            *  *    **     *      *  *       ** *     *    

consensus_10931#0      ACAGAAGAATTTCAGAAGCTTAGTTTTGATAAAGAGCTTGATACAACTTTGGTCAAGAAA 386
consensus_10931#3      ACAG-------------------------------------------------------- 331
consensus_10931#1      CTGTTTCTCATTATC-CATTCACTCATTCATTCCATGAAATTTATTGTAAAGTACCCGAT 473
consensus_10931#2      CAGAATATAGTGTTCGCAAAAACGCAACTGGACGCTCAAAGTTAGCAAAAATTCC----- 465
                                                                                   

consensus_10931#0      GGCATCATTAATGGATTTTTAGCATTTGACCGAGATCTAGCATCTGATGATTCCGATGAA 446
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      GTATTTAATTGGCAAATACAATACAATAGTACCGCTAAAAAAAAAAAAAAAA-------- 525
consensus_10931#2      GTTTTTAACCCTCGTAATTAACGCCAAATGATCACTCATCTTACT--------------- 510
                                                                                   

consensus_10931#0      AAATCGGGATCTACAGCAGTAATTGCCTTTGTTACACCAACCCATATAATTATGGCAAAT 506
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      TGTGGTGATTCAAGAGCGATACTTATTCGCGACAACAAAACCTTCCTAGCAACCCAAGAC 566
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      CACAAACCATATAATCCTATCGAAAGTCGACGAATTTCTGAAGCTGGTGGCAAAGTTATG 626
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      TTGTCTCGCGTTAATGGATCCTTAGCTGTTTCAAGATCTCTGGGTGACTTCGAATACAAA 686
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      CAGGTGCTTAATCGTGGAGTGACAGAGCAGCTTGTTTCTCCCGAACCAGATATATTCATT 746
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      GTTGAACGCAAAAAGAATTTGATCAAGTTCTTCTTCTTGCATGTGATGGAATTTGGGATG 806
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      TGTTTGAAAACGACACTCTCACTACATACGTCCTTCATCGGTTGTGTTGCTTACCATCTT 866
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      TGGCGGATGTTTGTTCAGAAATCCTCGACACTAGTTTGCACAAGGGTAGTCGTGATAATA 926
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      TGAGTGTCCTCCTGGTGGCGTTAGATGCTGCCCCAACTGTGAATCCAGAGGCAGTTTGCA 986
consensus_10931#3      ------------------------------------------------------------
consensus_10931#1      ------------------------------------------------------------
consensus_10931#2      ------------------------------------------------------------
                                                                                   

consensus_10931#0      AAGAAATGGAATTAGATACCTCCTTAAACAATATGATTGTTGATATAATTAAT 1039
consensus_10931#3      -----------------------------------------------------
consensus_10931#1      -----------------------------------------------------
consensus_10931#2      -----------------------------------------------------