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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 23 consensus length = 794 fasta sequence
[ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTACGCGGCGACCCGACCAACCTCAAAGCT-AGGGTAATGGCC-GTTCTAAAGCTGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG-ACCCAAAGTTAC-TGACAA-AGTGT-TTT-TCGATA-TTGA-AGTTGATGG-AAAAC-CACT-TGGT-CGAATAATTATCGGATTGTTTGGTAAAA-CAGTGCCTAAGACAGTGGAAAATTTCAAACAA-CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA]
[+] EMBL SM30874 [ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTACGCGGCGACCCGACCAACCTCAAAGCT AGGGTAATGGCC GTTCTAAAGCCGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGCT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA]
[+] EMBL AI976137 [ CCCGACCAACCTCAAAGCT AGGGTAATGGCC GTTCTAAAGCTGTTATGCCCGTTATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTT ]
[-] EMBL CD142653 [ acCCTCAAAGCTAAGGGAAATGGCCGGTTTAAAAGCTGTTATCCCGGTTATTACTACTGTTTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGG ACCAAAAGTACC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAACC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAACCAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCTCGATGGAACTGGAGGTTTTAGTAGTTcta ]
[+] EMBL CD137155 [ aCTTATTCGCAGGGAAGCGAATGGTACCCAAAGTTACGTGACAATAGTGTCTTTATTGATATTTGAGAGGAGAAGGTAAAACGCACTATGGTACGAATAATTATCGAATTGTTTGGAAAAA CAGTGCCTAAGACAGAGTGAAATGTCAGACAA CTTTCAATTGGCACTCAACTGAAGGAGGGTCGAACTGCTTCATATAAAGGACGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTAACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGATAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTNGTAAGAGCATCAAGATAGCCAGCTGCGGCCACATTCCCGT GAAATACCCTTCTCGGT ACGAACTCTGATGCTGTCG ]
[-] EMBL CD164177 [ G ACCCAAAGTTAC TGACAA AGTGT TTT TCGATA TTGA AGTTGATGG AAAAC CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCA ]
[-] EMBL CD156269 [ CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTC ]
[-] EMBL CD156460 [ CACT TGGT CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAGGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTC ]
[+] EMBL CD137086 [ T CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ]
[+] EMBL CD137010 [ T CGAATAATTATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGGAAAATTTCAAACAA CTTTCAATTGGCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ]
[-] EMBL CD136650 [ GAATAAATATCGGATTGTTTGGTAAAA CAGTGCCTAAGACAGTGG AAATTTC AACAACCTTTCAATTGGCACTCAACTGAAGGATGGTCGANCTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ]
[-] EMBL CD138463 [ CTTCATATAAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCTCGATGGAACTGGAGGTTNTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTG ]
[+] EMBL CD137056 [ ttCTTCATA AAAGGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGCCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGCGAAGACCTCGCGGTT ]
[-] EMBL AI067529 [ GGAAGCACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCAATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTCGTGAATATAATTTA]
[+] EMBL CD136925 [ CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTCCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTTTTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ]
[+] EMBL CD137104 [ CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTGCTCTTACCAACAAGGATCTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAGTTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ]
[+] EMBL CD137013 [ CACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ]
[-] EMBL CD137281 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAATCCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGTCCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAATCGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ]
[+] EMBL CD137145 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCTCAAACCACGATGGCACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACTTTGTTAGACAGATTGAAAGCGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCG ]
[+] EMBL CD136942 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCCTCTCGGTAACGAACTCTGATGCTGTCG ]
[+] EMBL CD136987 [ ACTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGAC ]
[-] EMBL CD137221 [ CTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTCCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ]
[-] EMBL CD136637 [ CTTTTCATCGTGTTATTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAAT GTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ]
[-] EMBL CD136712 [ TCACAAACCACGATGGAACTGGAGGTTTTAGTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGTGGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCGTGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGAACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCATCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTGATGCTGTCGA ]
consensusID : consensus_10936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 573 fasta sequence
[TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTTTTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTGAGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAATAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTACAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA]
[+] EMBL CD077238 [TATGTATTTGAGTAATAAATAAATGCTTTCATCATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTGATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCGCTTCAAACGCCATCGCGTTATCCACTCAGCTACTGAGTCATAAATGATTACAATCTGTATTGTTTTAGTAGCCTGAGATTTAATTCCAGTTGGATTGTATGTTGATCGTTTCTGATTGTTATTGAGATATACATATAGGCTATCGTCGTCGTATATAACTATTGAATTAACTGGCGTTAGTGAATAATGGAATGAAATAAGTCGTGTAAATATGAGAATGGATTTCGAATATGTATATTTTGTACAATCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAATGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAAAGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGAATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA]
consensusID : consensus_10936#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACAAACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTATTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGACAACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAATCCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGCTAACCAGAAAAA]
[+] EMBL CD090004 [GAATTTAATCACTAAAAAGTTTTTGTTAATTGTTTATGACGGCATATAAGTTGTTACACAAACTAATCTCTAGCTTATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAATTCATGAATGAAATTGCTATCGATTGTTAAGTAGAGTGCTGTATTACAATTTTCTTATTGTTAATTACATGAAATCAATCGATCAACTAGATACTAGGAAGTCAAGTCAACTATGACAACTATTATTGTTAGGCGATAATTACTCAATCTAACCTGAATAACTGTCACGGTAAGAATCCATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAAAGTAACTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTACCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCAATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCTGGCTAACCAGAAAAA]
consensusID : consensus_10936#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 327 fasta sequence
[ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATATTTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATAATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACCATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCG]
[+] EMBL CD161634 [ACAAAACCACTTCTCATATTAGTGAAAACGAGCTCTCTAGTGACTGATTTCATTAGATATTTCCTGGAATTCTGATGAGACGCAGAAATGAGTGGAGCTGGAATAGGTTTGTTTTGAATAATATCTCACTGAAGGCAATGGTGGATGTGTCGCTGAATTTCGTGGATCGGTTGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGCGCACAAACCATTGAAATGCCGTGTTCTTATTTTGAGAGGCGGTATAGTGGTGAAGTTGGTGAAGGCGTATTTGAAGGTGAGACGGAAGCCGAGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10936#1 ------------------------------------------------------------
consensus_10936#3 ------------------------------------------------------------
consensus_10936#0 ATCCGNNAAATCGATAATACGACTCACTAAGGATCCGTCGACATCTGTACCTTTGTTTAC 60
consensus_10936#2 ------------------------------------------------------------
consensus_10936#1 ------------------------------------------------------------
consensus_10936#3 ------------------------------------------------------------
consensus_10936#0 GCGGCGACCCGACCAACCTCAAAGCTAGGGTAATGGCCGTTCTAAAGCTGTTATGCCCGT 120
consensus_10936#2 ------------------------------------------------------------
consensus_10936#1 --------------------------------------TATGTATTTGAGTAATAAATAA 22
consensus_10936#3 ------------------------------------------------------ACAAAA 6
consensus_10936#0 TATTACTACTGTCTATCATATGTTTCGGCCTTATTCGCAGTGAAGCGAATGGACCCAAAG 180
consensus_10936#2 -----------------------------------------GAATTTAATCACTAAAAAG 19
* *
consensus_10936#1 ATGCTTTCAT--CATAAATAAATACGTAATCTTTTCAGATGTACCTGCATCTCAGAGTTG 80
consensus_10936#3 CCACTTCTCA--TATTAGTGAAAACGAGCTCTCTAGTGAC-TGATTTCATTAGATATTTC 63
consensus_10936#0 TTACTGACAAAGTGTTTTTCGATATTGAAGTTGATGGAAAACCACTTGGTCGAATAATTA 240
consensus_10936#2 TTTTTGTTAAT-TGTTTAT-GACGGCATATAAGTTGTTACACAAACTAATCTC-TAGCTT 76
* * * * * * * *
consensus_10936#1 ATGTTCACTCTAGGGACTCGAACCCAGTACCTTTCG----CTTCAAACGCCATCGCGTTA 136
consensus_10936#3 CTGGA-ATTCTGATGAGACGCAGA-AATGAGTGGAG----CTG-GAATAGGTTTGTTTTG 116
consensus_10936#0 TCGGATTGTTTGGTAAAACAGTGCCTAAGACAGTGGAAAATTTCAAACAACTTTCAATTG 300
consensus_10936#2 ATGTCAGATGTAGCTAACCGTCAATTAGTGGAAATAACATCTTCGAAT--TCATGAATGA 134
* * * * * * ** *
consensus_10936#1 TCCACTCAGCTACTGA-GTCATAAATGATT-ACAAT-CTGTA----TTGTTTTAGTAGCC 189
consensus_10936#3 AATAATATCTCACTGAAGGCAATGGTGGAT-GTGTCGCTGAA----TTTCGTGGATCGGT 171
consensus_10936#0 GCACTCAACTGAAGGATGGTCGAACTGCTTCATATAAAGGAAGCACTTTTCATCGTGTTA 360
consensus_10936#2 AATTGCTATCGATTGTTAAGTAGAGTGCT--GTATTACAATTTTCTTATTGTTAATTACA 192
* * ** * *
consensus_10936#1 TGAGATTTAATTCCAGTTGGATTGTATG-TTGATCGTTTCTGATTGTTATTGAGATATAC 248
consensus_10936#3 TGAATTTTGAAATGAACATGGTTGGTTGATTGATTAGTGTTCTTGAGTTTGAGGGCTTGC 231
consensus_10936#0 TTAAGTCATTCATGATACAAGGTGGAGACTTCACAAACCACGATGGAACTGGAGGTTTTA 420
consensus_10936#2 TGAAATCAATCG----ATCAACTAGATA-CTAGGAAGTCAAGTCAACTATGACAACTATT 247
* * * * * *
consensus_10936#1 ATATA---GGCTATCGTCGTCGTA-TATAACTATTGAATTAACTGGCGTTAGTGAATAAT 304
consensus_10936#3 GCACA---AACCATTGAAATGCCG-TGTTCTTATT---TTGAGAGGCGGTAT--AGTGGT 282
consensus_10936#0 GTATTTATGGCGATAGGTTCCCTGATGAAAACTTCAAATTGAGACATGTGGGTGCAGGGT 480
consensus_10936#2 ATTGTTA-GGCGATAATTACTCAA-TCTAACCTGAA---TAACTGTCACGGTAAGAATCC 302
* ** * * *
consensus_10936#1 GGAATGAAATAAGTCGTGT--AAA--TATGAGAATGGATTTCGAATATGTATATTTTGTA 360
consensus_10936#3 GAAGTTGGTGAAGGCGTATTTGAA--GGTGAGA-CGGAAGCCGAGTCG------------ 327
consensus_10936#0 GGCTGTCGATGGCTAATGCTGGTCCTGATACAAATGGAAGCCAATTCTTTATTACGACCG 540
consensus_10936#2 ATTCATAATCAATTTGACTACAGAGTTAAATACATAAAATTCCAATACTGATTTTTCCAA 362
* * * *
consensus_10936#1 CAA-----TCATTAATCCAGGAAGACGATTAAAGGAGCGGAACAAAGCGAAACGAAATAA 415
consensus_10936#3 ------------------------------------------------------------
consensus_10936#0 TGAAGACCTCGTGGTTAGATGGAAAGCATGTTGTTTTCGGAAAAGTTGTAGAAGGAATGA 600
consensus_10936#2 AGTAA---CTATTTACTTGTTTAACGTATTACTTACTTACTTACTTACTCACACATGTTA 419
consensus_10936#1 TGCGCGTTGGAGGAGGTACATAAGAACACATTACGTCGGGAAATAGAAGCAGATATGAAA 475
consensus_10936#3 ------------------------------------------------------------
consensus_10936#0 ACATTGTTAGACAGATTGAAAGTGAAACGACGGATTCAAGAGATAGACCTGTTAAGAGCA 660
consensus_10936#2 CCCCTCGTGGAGGAGCATAGGCCGCTCACCAGCATTCTCCATCCAACTCTGTCCAGGGCA 479
consensus_10936#1 AGGATGAATAACAACTGGAACGAACTGGAAAGGATTGACCAGGACAAGGTTGGATGGAGA 535
consensus_10936#3 ------------------------------------------------------------
consensus_10936#0 TCAAGATAGCCAGTTGCGGCCACATTCCCGTGGAAATACCCTTCTCGGTAACGAACTCTG 720
consensus_10936#2 --ATCCTTTCCAGTTCCTTCCAGTTGTTATTCATTCTGTTCATATCTGCTTCTATTTCCT 537
consensus_10936#1 ATGCTGGTGAGCGGCCTATGCTCCTCCACGAGGGGTAA---------------------- 573
consensus_10936#3 ------------------------------------------------------------
consensus_10936#0 ATGCTGTCGAATGAACTAGTATGAAGAATTTCTTATACTCTTTTGTATTTATGTACATTC 780
consensus_10936#2 GGCTAACCAGAAAAA--------------------------------------------- 552
consensus_10936#1 --------------
consensus_10936#3 --------------
consensus_10936#0 GTGAATATAATTTA 794
consensus_10936#2 --------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||