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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10965#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1303 fasta sequence
[AGAGGTAGAGGACGATGTAAATAGTGTTGATGATGAAGGTGCCGAGGAGGAAGATATGGCTCAGGATGCTGTTAATCACATCGAAACAAATGATGTACAAGAAGAAAGTTTGGCTGTTATTCTTCATGAGGATAAAAAGTATTATCCAAGTGCACTAGAAGTTTATGGTCCCGAGGTTGAAACCTTAGTACAGGAAGAAGATGCTCAGCCGTTGACACAACCATTAATAGAACCAGTTCGACGCA-AAAAGTTTGCTTACACGGAAGCATCGATTCCAACAACAACGTACGACCCTGAATTCTTGACTGACCTTATGGATTGTCCGGAATTGATTCGCAACGTTGTTCTTTGTGGACATTTGCATCATGGCAAAACTTCCTTTATGGACTGTTTGATAGAACTTACTCACCCTGATATTGAAGCGAAAGAAGACAAAAATCTCAGGTATACTGATTTCTTGCACATGGAGGTAGAAAGAGGACTGAGTATAAAATCTACTCCAGTTTCCTTGGTGCTGCGCAGCATGCAAGAAAAGTCGTATCTGTTTAACATCTTTGATACACCAGGTCACGTCAATTTCTCTGATGAAGTAACTGCTGCTTTCCGACTCGCCGATGGAATCTGTCTGTTAGTGGACGTCAGCGAAGGTGTACTTTTAAACACCGAACGTATTCTTAAACATGCTCTACAAGAACGACTACCGGTAACACTGTGCATCAACAAAATAGATCGTCTCATAATCGAACT-AAG-TGCCACCAATGGATGCGTATTACAAAATCAAGCACATAATTGATGAAGTAAATTCAATTCTTCTGACTTATTCTGAAGGTGCAGGTATTACAGATGATACACAACCTGTTGTCAGCCCATTATTGGGAAATGTATGCTTCGCAAGTACTTATTACCGATTCTGCTTTACTTTGGAATCATTTGCGAGAATATATATGGATACATTTTCCAACGGTATGGATCACAAAGAATTCGCTGGACGTTTATGGGGTGATATATATTTTAATTCTAAAACAAGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGTTGATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGC]
[+] EMBL CD115448 [AGAGGTAGAGGACGATGTAAATAGTGTTGATGATGAAGGTGCCGAGGAGGAAGATATGGCTCAGGATGCTGTTAATCACATCGAAACAAATGATGTACAAGAAGAAAGTTTGGCTGTTATTCTTCATGAGGATAAAAAGTATTATCCAAGTGCACTAGAAGTTTATGGTCCCGAGGTTGAAACCTTAGTACAGGAAGAAGATGCTCAGCCGTTGACACAACCATTAATAGAACCAGTTCGACGCA AAAAGTTTGCTTACACGGAAGCATCGATTCCAACAACAACGTACGACCCTGAATTCTTGGCTGACCTTATGGATTGTCCGGAATTGATTCGCAACGTTGTTCTTTGTGGACATTTGCATCATGGCAAAACTTCCTTTATGGACTGTTTGATAGAACTTACTCACCCTGATATTGAAGCGAAAGAAGACAAAAATCTCAGGTATACTGATTTCTTGCACATGGAGGTAGAAAGAGGACTGAGTATAAAATCTACTCCAGTTTCCTTGGTGCTGCGCAGCATGCAAGAAAAGTCGTATCTGTTTAACATCTTTGATACACCAGGTCACGTCAATTTCTCTGATGAAGTAGCTGCTGCTTTCCGACTCGCCGATGGAATCTGTCTGTTAGTGAACGTCAGCGAAAGTGTACTTT ]
[+] EMBL CD115776 [AGAGGTAGAGGACGATGTAAATAGTGTTGGTGATGAAGGTGCCGAGGAGGAAGATATGGCTCAGGATGCTGTTAATCACATCGAAACAAATGATGTACAAGAAGAAAGTTTGGCTGTTATTCTTCATGAGGATAAAAAGTATTATCCAAGCGCACTAGAAGTTTATGGTCCCGAGGTTGAAACCTTAGTACAGGAAGAAGATGCTCAGCCGTTGACACAACCATTAATAGAACCAGTTCGACGCATTAAAGTTTGCTTACACG ]
[+] EMBL CD119729 [ agcttcaATGATGAAGGTGCCGAGGAGGAAGATATGGCTCAGGATGCTGTTAATCACATCGAAACAAATGATGTACAAGAAGAAAGTTTGGCTGTTATTCTTCATGAGGATAAAAAGTATTATCCAAGTGCACTAGAAGTTTATGGTCCCGAGGTTGAAACCTTAGTGCAGGAAGAAGATGCTCAGCCGTTGACACAACCATTAATAGAACCAGTTCGACGCA AAAAGTTTGCTTACACGGAAGCATCGATTCCAACAACAACGTACGACCCTGAATTCTTGACTGACCTTATGGATTGTCCGGAATTGATTCGCAACGTTGTTCTTTGTGGACATTTGCATCATGGCAAAACTTCCTTTATGGACTGTTTGATAGAACTTAC ]
[+] EMBL AI975945 [ TCACATCGAAACAAATGATGTACAAGAAGAAAGTTTGGCTGTTATTCTTCATGAGGATAAAAAGTATTATCCAAGTGCACTAGAAGTTTATGGTCCCGAGGTTGAAACCTTAGTACAGGAAGAAGATGCTCAGCCGTTGACACAACCATTAATAGAACCAGTTCGACGCA AAAAGTTTGCTTACACGGAAGCATCGATTCCAACAACAACGTACGACCCTGAATTCTTGACTGACCTTATGGATTGTCCGGAATTGATTCGCAACGTTGTTCTTTGTGGACATTTGCATCATGGCAAAACTTCCTTTATGGACTGTTTGATAGAACTTACTCACCCTGATATTGAAGCGAAAGAAGACAAAAATCTCAGGTATACTGATTTCTTGCACATGGAGGTAGAAAGAGGACTGAGTATAAAATCTACTCCAGTTTCCTTGGTGCTGCGCAGCATGCAAGAAAAGTCGTATCTGTTTAACATCTTTGATACACCAGGTCACGTCAATTTCTCTGAT ]
[+] EMBL CD122187 [ ccACCATTAATAGAACCAGTTCGACGCA AAAAGTTTGCTTACACGGAAGCATCGATTCCAACAACAACGTACGACCCTGAATTCTTGACTGACCTTATGGATTGTCCGGAATTGATTCGCAACGTTGTTCTTTGTGGACATTTGCATCATGGCAAAACTTCCTTTATGGACTGTTTGATAGAACTTACTCACCCTGATATTGAAGCGA ]
[-] EMBL CD166589 [ CCAGTTTCCTTGGTGCTGCGCAGCATGCAAGAAAAGTCGTATCTGTTTAACATCTTTGATACACCAGGTCACGTCAATTTCTCTGATGAAGTAACTGCTGCTTTCCGACTCGCCGATGGAATCTGTCTGTTAGTGGACGTCAGCGAAGGTGTACTTTTAAACACCGAACGTATTCTTAAACATGCTCTACAAGAACGACTACCGGTAACACTGTGCATCAACAAAATAGATCGTCTCATAATCGAACT AAG TGCCACCA ]
[+] EMBL CD153758 [ ACTGCTGCTTTCCGACTCGCCGATGGAATCTGTCTGTTAGTGGACGTCAGCGAAGGTGTACTTTTAAACACCGAACGTATTCTTAAACATGCTCTACAAGAACGACTACCGGTAACACTGTGCATCAACAAAATAGATCGTCTCATAATCGAACTAAAGTTGCCACCAATGGATGCGTATTACAAAATCAAGCACATAATTGATGAAGTAAATTCAATTCTTCTGACTTATTCTGAAGGTGCAGGTATTACAGATGATACACAACCTGTTGTCAGCCCATTATTGGGAAATGTATGCTTCGCAAGTACTTATTACCGATTCTGCTTTACTTTGGAATCATTTGCGAGAATATATATGGATACATTTTCCAACGGTATGGATCACAAAGAATTCGCTGGACGTTTATGGGGTGATATATATTTTAATTCTAAAACAAGAAGATTTCACAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGACCCTTTAT ]
[+] EMBL CD199895 [ TTATTGGGAAATGTATGCTTCGCAAGTACTTATTACCGATTCTGCTTTACTTTGGAATCATTTGCGAGAATATATATGGATACATTTTCCAACGGTATGGATCACAAA ]
[-] EMBL CD160147 [ TATGCTTCGCAAGTACTTATTACCGATTCTGCTTTACTTTGGAATCATTTGCGAGAATATATATGGATACATTTTCCAACGGTATGGATCACAAAGAATTCGCTGGACGTTTATGGGGTGATATATATTTTAATTCTAAAACAAGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGTTGATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCC ]
[-] EMBL BG932218 [ TATGGGGTGATATATATTTTAATTCTAAAACAAGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGTTGATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGC]
consensusID : consensus_10965#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1088 fasta sequence
[CGTACTGATAAATAAGTGGGTCACTTCAGATCAGTAGTTGTCAGCCTCGTAGTATAATTTGATTTTTTGTCGGACTTAAATGGAGTACTATCAAATTTACTTTAAATCTATTACAGAGGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGTTGATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGCAACTAAAGTGGGA-TCAACGTATACTGGCACACTAGATAATAATCTCGGACGTGCTATGATAAAATGCAATATGAATTACGAACACGTAATGGTTCATACTACCAAACTCTATCCTGATCAAGAAGCTATCTCTTTTCATGTTTTTGGACGTGTTTTATGTGGTACCTTATTTGCTGGTCAAACCGTCCGTGTTTTAGGCGAGAACTACACACTTTCTGACGAAGAAGATTCTCGACCAGCTACAGTTGGCCGTCTGTGGGTATCTGTCGCGCGTTACCAGCTGGAGGTCAATCGGGTACCAGCGGGTAATTGGGTGTTGATTGAGGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTTGAAGAATCGGGTGAACGTGTCATTCGTGGTACTGGCGAATTGTATTTAGATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGACAGTTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGA]
[+] EMBL CD088497 [CGTACTGATAAATAAGTGGGTCACTTCAGATCAGTAGTTGTCAGCCTCGTAGTATAATTTGATTTTTTGTCGGACTTAAATGGAGTACTATCAAATTTACTTTAAATCTATTACAGAGGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGTTGATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTCGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGCAACTAAAGTGGGA TCAACGTATACTGGCACACTAGATAATAATCTCGGACGTGCTATGATAAAATGCAATATGAATTACGAACACGTAATGGTTCATACTACCAAACTCTATCCTGATCAAGAAGCTATCTCTTTTCATGTTTTTGGACGTGTTTTATGTGGTACCTTATTTGCTGGTCAAACCGTCCGTGTTTTAGGCGAGAACTACACGCTTT ]
[+] EMBL CD088544 [CGTACTGATAAATAAGTGGGTCACTTCAGATCAGTAGTTGTCAGCCTCGTAGTATAACTTGATTTTTTGTCGGACTTAAATGGAGTACTATCAAATTTACTTTAAATCTATTACAGAAGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGTTGATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGCAACTAAAGTGGGA TCAACGTATACTGGCACACTAGATAATAATCTCGGACGTGCTATGATAAAATGCAATATGAATTACGAACACGTAATGGTTCATACTACCAAACTCTATCCTGATCAAGAAGCTATCTCTTTTCATGTTTTTGGACGTGTTTTATGTGGTACCTTATTTGCT ]
[+] EMBL CD190585 [ GATACTTGCTTGCCGTCATTGTGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGCAACTAAAGTGGGA TCAACGTATACTGGCACACTAGATAATAATCTCGGACGTGCTATGATAAAATGCAATATGAATTACGAACACGTAATGGTTCATACTACCAAACTC ]
[+] EMBL CD062511 [ GGGAGTC ACGTATAC GGGACACTAGATAATAATCTCGGACGTGCTATGATAAAATGCAATATGAATTACGAACACGTAATGGTTCATACTACCAAACTCTATCCTGATCAAGAAGCTATCTCTTTTCATGTTTTTGGACGTGTTTTATGTGGTACCTTATTTGCTGGTCAAACCGTCCGTGTTTTAGGCGAGAACTACACACTTTCTGACGAAGAAGATTCTCGACCAGCTACAGTTGGCCGTCTGTGGGTATCTGTCGCGCGTTACCAGCTGGAGGTCAATCGGGTACCAGCGGGTAATTGGGTGTTGATTGAGGGTGTCGACCATCCTATTGTGAAAACAGCTACAAT ]
[+] EMBL CD084291 [ gaGGGTCATACTACCAAACTCTATCCTGATCAAGAAGCTATCTCTTTTCATGTTTTTGGACGTGTTTTATGTGGTACCTTATTTGCTGGTCAAACCGTCCGTGTTTTAGGCGAGAACTACACACTTTCTGACGAAGAAGATTCTCGACCAGCTACAGTTGGCCGTCTGTGGGTATCTGTCGCGCGTTACCAGCTGGAGGTCAATCGGGTACCAGCGGGTAATTGGGTGTTGATTGAGGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTTGAAGAATCGGGTGAACGTGTCATTCGTGGTACTGGCGAATTGTATTTAGATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGACAG ]
[-] EMBL CD196073 [ cgaCTGACTAAGAAGATTCTCGACCAGCTACAGTTGGCCGTCTGTGGGTATCTGTCGCGCGTTACCAGCTGGAGGTCAATCGGGTACCAGCGGGTAATTGGGTGTTGATTGAGGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCAACGCCACCAAGATT ]
[-] EMBL CD138381 [ CTCGACCAGCTACAGTTGGCCGTCTGTGGGTATCTGTCGCGCGTTACCAGCTGGAGGTCAATCGGGTACCAGCGGGTAATTGGGTGTTGATTGAGGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCCCGCCACCAAGGTTGAAGAATCG ]
[-] EMBL CD112743 [ gaccTTGGGTGTTGATTGAGGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTca ]
[-] EMBL CD148089 [ AGGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTC ]
[+] EMBL AW017382 [ GGGTGTCGACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATATTCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTTGAAGAATCGGGTGAACGTGTCATTCGTGGTACTGGCGAATTGTATTTAGATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGAAAGTTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGA]
consensusID : consensus_10965#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 863 fasta sequence
[GGGCTCGAGGACCGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATCGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTTGAAGAATCGGGTGAACGTGTCATTCGTGGTACTGGCGAATTGTATTTAGATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGAAAGTTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGAAACACCAAATAAGAAAAATAAGTTAACTATGATCGCTGAGCCACTCGATAAGGGTTTAGCTGAGGACATAGAGAATAAGGTTGTGCAAATCACTTGGCC-AAAAAAGCGACTCGGAGACTTTTTCCAGAAAAAGTATGACTGGGATTTGCTTGCCTCCAGATCTATCTGGGCTTTTGGGCCAGACGCTACTGGTCCGAATATACTAATGGATGATACATTACCGTCTGAAGTTGATAAGAATTTACTACTTACTGTCAAAGATTATATCGTACAGGGTTTCCAATGGGGTACACGTGAAGGACCACTTTGTGACGAACCGATTCGTAATGTGAAATTTAAAATATTGGATGCTCTGATTTCTGGCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCTACAGCTCGTCGAGTTGCCTATTCTGCTTTCCTCATGGCCACACCTCGCTTGATGGAACCTTATTATTTAGTTGAGGTCCAGGCGCCTGCGGATTGTGTTTCAGCGGTATATACAGTTCTTGCTCGTCGTCGTGGTCATGTGACACATGATGCTCCTATATCTGGATCTCCTTTATATG]
[+] EMBL CD081430 [GGGCTCGAGGACCGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATCGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTTGAAGAATCGGGTGAACGTGTCATTCGTGGTACTGGCGAATTGTATTTAGATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGAAAGTTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGAAACACCAAATAAGAAAAATAAGTTAACTATGATCGCTGAGCCACTCGATAAGGGTTTAGCTGAGGACATAGAGAATAAGGTTGTGCAAATCACTTGGCC AAAAAAGCGACTCGGAGACTTTTTCCAGAAAAAGTATGACTGGGATTTGCTTGCCTCCAGATCTATCTGGGCTTTTGGGCCAGACGCTACTGGTCCGAATATACTAATGGATGATACATTACCGTCTGAAGTTGATAAGAATTTACTACTTACTGTCAAAGATTATATCGTACAGGGTTTCCAATGGGGTACACGTGAAGGACCACTTTGTGACGAACCGATTCGTAATGTGAAATTT AAATATTGGATGCTCTGATTTCTGGCGAAGCACACCAACGG ]
[+] EMBL CD114556 [ TGTATTTAGATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGAAAGTTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGAAACACCAAATAAGAAAAATAAGTTAACTATGATCGCTGAGCCACTCGATAAGGGTTTAGCTGAGGACATAGAGAATAAGGTTGTGCAAATCACTTGGCC AAAAAAGCGACTCGGAGACTTTTTCCAGAAAAAGTATGACTGGGATTTGCTTGCCTCCAGATCTATCTGGGCTTTTGGGCCAGACGCTACTGGTCCGAATATACTAATGGATGATACATTACCGTCTGAAGTT ]
[+] EMBL CD095707 [ GATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGAAAGTTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGAAACACCAAATAAGAAAAATAAGTTAACTATGATCGCTGAGCCACTCGATAAGGGTTTAGCTGAGGACATAGAGAATAAGGTTGTGCAAATCACTTGGCCAAAAAAAGCGACTCGGAGACTTTTTCCAGAAAAAGTATGACTGGGATTTGCTTGCCTCCAGATCTATCTGGGCTTTTGGGCCAGACGCTACTGGTCCGAATATACTAATGGATGATACATTACCGTCTGAAGTTGATAAGAATTTACTACTTACTGTCAAAGATTATATCGTACAGGGTTTCCAATGGGGTACACGTGAAGGACCACTTTGTGACGAACCGATTCGTAATGTGAAATTTAAAATATTGGATGCTCTGATTTCTGGCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCTACAGCTCGTCGAGTTGCC ]
[+] EMBL CD114413 [ GACCACTTTGTGACGAACCGATTCGTAATGTGAAATTTAAAATATTGGATGCTCTGATTTCTGGCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCTACTGCTCGTTGAGTTGCCTATTCTGCTTTCCTCATGGCCACACCTCGCTTGATGGAACCTTATTATTTAGTTGAGGTCCAGGCGCCTGCGGATTGTGTTTCAGCGGTATATACAGTTCTTGCTCGTCGTCGTGGTCATGTGACACATGATGCTCCTATATCTGGATCTCCTTTATATG]
consensusID : consensus_10965#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[TGATCGCTGAGCCACTCGATAAGAGGTTTACGCTGAGCGACATACGAGAATAACGGTTGTGCAAAGTCACTATGGCCAGAAAAAGCGACTCGTGAGACTTTTTCCAGCATAAAGTATGACTGGGCATTTGCTTGCCTCCAGAATCTATCTGGGTCTTTTGGGCCAGAACGCTACTGGTCCGATATATACTATATGGATGATACATTACAGTCTGAATGTTGATCAAGAATTTACTNACTTACTGGTCAAGAGATTATATTCGTACAGGGNTTTCCAAGTAGGGGTACACGATGAAAGGACCATCTTATGTGACGAACCTGATTCGATAATGTGAAATTTAAATCTATTCGGATGCTCTCGATTTCTGTGCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCTACAGCTCGTCGAGTTGCCTATTCTGCTTTCCTCATGGCCACACCTCGCTTGATGGAACCTTATTATTTAGTTGAGGTCCAGGCGCCT]
[+] EMBL CD197580 [TGATCGCTGAGCCACTCGATAAGAGGTTTACGCTGAGCGACATACGAGAATAACGGTTGTGCAAAGTCACTATGGCCAGAAAAAGCGACTCGTGAGACTTTTTCCAGCATAAAGTATGACTGGGCATTTGCTTGCCTCCAGAATCTATCTGGGTCTTTTGGGCCAGAACGCTACTGGTCCGATATATACTATATGGATGATACATTACAGTCTGAATGTTGATCAAGAATTTACTNACTTACTGGTCAAGAGATTATATTCGTACAGGGNTTTCCAAGTAGGGGTACACGATGAAAGGACCATCTTATGTGACGAACCTGATTCGATAATGTGAAATTTAAATCTATTCGGATGCTCTCGATTTCTGTGCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCTACAGCTCGTCGAGTTGCCTATTCTGCTTTCCTCATGGCCACACCTCGCTTGATGGAACCTTATTATTTAGTTGAGGTCCAGGCGCCT]
consensusID : consensus_10965#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 205 fasta sequence
[TTCTGGCAAGTTTGTGGATTTTGCGTTACCCTTGCTAGTGTTTTTGGTAAGTCTGTACTTTAGTTGACACAATCATCAACTTCATTATCTTGTTTGATCTTAAAGATGGATACGGATTTATATGATGAATTCGGGAATTACATCGGGCCTGATCTTTTGTCTGACGAAGAGGTAGAGGACGATGTAAATAGTGTTGATGATGAAG]
[+] EMBL CD184103 [TTCTGGCAAGTTTGTGGATTTTGCGTTACCCTTGCTAGTGTTTTTGGTAAGTCTGTACTTTAGTTGACACAATCATCAACTTCATTATCTTGTTTGATCTTAAAGATGGATACGGATTTATATGATGAATTCGGGAATTACATCGGGCCTGATCTTTTGTCTGACGAAGAGGTAGAGGACGATGTAAATAGTGTTGATGATGAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10965#2 ------------------------------------------------------------
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 ------------------------------------------------------------
consensus_10965#0 AGAGGTAGAGGACGATGTAAATAGTGTTGATGATGAAGGTGCCGAGGAGGAAGATATGGC 60
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 ---------------------------------------------------GGGCTCGAG 9
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 ----------------CGTACTGATAAATAAGTGGGTCACTTCAGATCAGTAGTTGTCAG 44
consensus_10965#0 TCAGGATGCTGTTAATCACATCGAAACAAATGATGTACAAGAAGAAAGTTTGGCTGTTAT 120
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 GACCGTTGTTAAGATTGCTGTGGAACCTGCTAATCCTTCTGAGTTACCTAAATCGTTGGA 69
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 CCTCGTAGTATAATTTGATTTTTTGTCGGACTTAAATGGAGTACTATCAAATTTACTTTA 104
consensus_10965#0 TCTT-CATGAGGATAAAAAGTATTATCCAAGTGCACTAGAAGTTTATGGTCCCGAGGTTG 179
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 TGGTCTTAGAAAAGTTAATAAAAGTTATCCTCTCCTCGCCACCAAGGTTGAAGAATCGGG 129
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 AATCTATTACAGAGGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAACATT 164
consensus_10965#0 AAACCTTAGTACAGGAAGAAG--ATGCTCAGCCGTTGACACAACCATTAATAGAACCAGT 237
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 TGAACGTGTCATTCGTGGTACTGGCGAATTGTATTTAGATTGTGTTATGCACGATCTACG 189
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 TGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATGT-TG 223
consensus_10965#0 TCGACGCAAAAAGTTTGCTTACACGGAAGCATCGATTCCAACAACAACGTACGACCCTGA 297
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 CAAGCTCTACTCTGATATCG--ATGTGAAAGTTGCTGACCCTGTTGTAGCATTTTGCG-A 246
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 ATACTTGCTTGCCGTCATTG--TGTTCAGAGTTGGGTATCTATTTAACGAAATCTGAA-A 280
consensus_10965#0 ATTCTTGACTGACCTTATGGATTGTCCGGAATTGATTCGCAACGTTGTTCTTTGTGGACA 357
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 GACAGTTGTGGAAACTTCCTCTTTGAAGTGCTTTGCTGAAACACCAAATAAGAAAAATAA 306
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 TGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATTTCT 340
consensus_10965#0 TTTGCATCATGGCAAAACTTCCTTTATGGACTGTTTGATAGAACTTACTCACCCTGATAT 417
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 GTTAACT-ATGATCGC-TGAGCCACTCG-ATAAG-GGTTTA-----GCTGAG-GACATA- 355
consensus_10965#3 ---------TGATCGC-TGAGCCACTCG-ATAAGAGGTTTAC----GCTGAGCGACATAC 45
consensus_10965#1 CTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTA-ACTCAGCCGCA-AC 398
consensus_10965#0 TGAAGCGAAAGAAGACAAAAATCTCAGGTATACTGATTTCTTGCACATGGAGGTAGAAAG 477
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 GAGAATAA-GGTTGTGCAAA-T------------------CACT-TGGCCA--AAAAAGC 392
consensus_10965#3 GAGAATAACGGTTGTGCAAAGT------------------CACTATGGCCAG-AAAAAGC 86
consensus_10965#1 TAAAGTGGGATCAACGTATACTG----------------GCACACTAGATAA-TAATCTC 441
consensus_10965#0 AGGACTGAGTATAAAATCTACTCCAGTTTCCTTGGTGCTGCGCAGCATGCAAGAAAAGTC 537
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 G-ACTCG--GA-GACTTTTTCCAGAA-AAAGTATGACTGGG-ATTTGCT-----TGCCTC 441
consensus_10965#3 G-ACTCGT-GA-GACTTTTTCCAGCATAAAGTATGACTGGGCATTTGCT-----TGCCTC 138
consensus_10965#1 GGACGTGC-TATGATAAAATGCAATATGAATTACGAACACGTAATGGTTCA---TACTAC 497
consensus_10965#0 GTATCTGTTTAACATCTTTGATACACCAGGTCACGTCAATTTCTCTGATGAAGTAACTGC 597
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 CAGA-TCTATCTGGG-CTTTTGGGCCAGA-CGC--TACTGGTCC---GA-ATATACTA-A 491
consensus_10965#3 CAGAATCTATCTGGGTCTTTTGGGCCAGAACGC--TACTGGTCC---GATATATACTATA 193
consensus_10965#1 CAAACTCTATCCTGA-TCAAGAAGCTATCTCTT--TTCATGTTTTTGGACGTGTTTTATG 554
consensus_10965#0 TGCTTTCCGACTCGCCGATGGAATCTGTCTGTTAGTGGACGTCAGCGAAGGTGTACTTTT 657
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 TGGA---TGATACATT-------ACCGTCTGAA-GTTGAT-AAGAATTTACTA-CT-TAC 537
consensus_10965#3 TGGA---TGATACATT-------ACAGTCTGAATGTTGATCAAGAATTTACTNACT-TAC 242
consensus_10965#1 TGGTACCTTATTTGCTGGTCAA-ACCGTCCGTGTTTTAGGCGAGAACT-ACACACT-TTC 611
consensus_10965#0 AAACACCGAACGTATTCTTAAACATGCTCTACAAGAACGACTACCGGTAACACTGTGCAT 717
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 TG-TCAA--AGATTAT-AT-CGTACAGGGTT--TCCAATG---GGGTACACGT---GAAG 584
consensus_10965#3 TGGTCAAG-AGATTAT-ATTCGTACAGGGNT--TTCCAAGTAGGGGTACACGATG-AAAG 297
consensus_10965#1 TGACGAAGAAGATTCTCGACCAGCTACAGTT--GGCCGTCTGTGGGTATCTGTCGCGCGT 669
consensus_10965#0 CAACAAAATAGATCGTCTCATAATCGAACTAAGTGCCACCAATGGATGCGTATT--ACAA 775
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 GACCACTTT--GTGACGAACC-GATTC-----G-TAAT---GTGAAATTTAAAA-TATT- 630
consensus_10965#3 GACCATCTTATGTGACGAACCTGATTC-----GATAAT---GTGAAATTTAAATCTATTC 349
consensus_10965#1 TACCAGCTG--GAGGTCAATCGGGTACCAGCGGGTAATTGGGTGTTGATTGAGGGTGTCG 727
consensus_10965#0 AATCAAGCA-CATAATTGATGAAGTAAATTCAATTCTTCTGACTTATTCTGAAGGTGCAG 834
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 GG-ATGCTCT---GATTTCTG-GCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCT 685
consensus_10965#3 GG-ATGCTCTC--GATTTCTGTGCGAAGCACACCAACGGGGTTCTGGACAAATAATTCCT 406
consensus_10965#1 ACCATCCTATTGTGAAAACAGCTACAATAACATCAGCGGATGCCCGTGGAGCATATATAT 787
consensus_10965#0 GT-ATTACA----GATGATACACAACCTGTTGTCAGCCCATTATTGGGAAATGTATGCTT 889
consensus_10965#4 --------------------------------TTCTGGCAAGTTTGTGGATTTTGCGTTA 28
* *
consensus_10965#2 ACAGCTCGTCGAGTTGC--CTATTCTGCTTTCCTCAT--GGCCACACCTCGCTTGATGGA 741
consensus_10965#3 ACAGCTCGTCGAGTTGC--CTATTCTGCTTTCCTCAT--GGCCACACCTCGCTTGATGGA 462
consensus_10965#1 TCAGACCCTTAAATTTCAATACTTCTTCGGTTGTTAA--GATTGCTGTGGAACCTGCTAA 845
consensus_10965#0 CGCAAGTACTTATTACCGATTCTGCTTTACTTTGGAATCATTTGCGAGAATATATATGGA 949
consensus_10965#4 CCCTTGCTAGTGTTTTTGGTAAGTCTGTACTTTAGTT---GACACAATCATCAACTTCAT 85
* ** * *
consensus_10965#2 ACC--TTATTATTTAGTTGAGGTCCAGGC--GCCTGCGGATTGTGTTTCAGCGGTATATA 797
consensus_10965#3 ACC--TTATTATTTAGTTGAGGTCCAGGC--GCCT------------------------- 493
consensus_10965#1 TCC--TTCTGAGTTACCTAAATTGTTGGATGGTCTTAGAAAAGTTAATAAAAGTTATCCT 903
consensus_10965#0 TACATTTTCCAACGGTATGGATCACAAAGAATTCGCTGGACGTTTATGGGGTGATATATA 1009
consensus_10965#4 TATCTTGTTTGATCTTAAAGATGGATACGGATTTATATGATGAAT-TCGGGAATTACATC 144
*
consensus_10965#2 CAGTTCTTGCTCGTCGTCGTGGTCATGTGACACATGATGCTCCTATATCTGGATCTCCTT 857
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 CTCCTCGCCACCAAGGTTGAAGAATCGGGTGAACGTGTCATTCGTGGTACTGGCGAATTG 963
consensus_10965#0 TT-TTAATTCTAAAACAAGAAGATTTCAAAAACGGCCACCTTCTGCAAATTCACAACGAA 1068
consensus_10965#4 GGGCCTGATCTTTTGTCTGACGAAGAGGTAGAGGACGATGTAAATAGTGTTGATGATGAA 204
consensus_10965#2 TATATG------------------------------------------------------ 863
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 TATTTA--GATTGTGTTATGCACGATCTACGCAAGCTCTACTCTGATATCGATGTGACAG 1021
consensus_10965#0 CATTTGTGGATTTTATTCTCGAACCTTTATACAAGATTTTTGCTCAAACTGTTGGCGATG 1128
consensus_10965#4 G----------------------------------------------------------- 205
consensus_10965#2 ------------------------------------------------------------
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 TTGCTGACCCTGTTGTAGCATTTTGCGAGACAGTTGTGGAAACTTCCTCTTTGAAGTGCT 1081
consensus_10965#0 TTGATACTTGCTTGCCGTCATTGTGTT---CAGAGTTGGGTATCTATTTAACGAAATCTG 1185
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 ------------------------------------------------------------
consensus_10965#3 ------------------------------------------------------------
consensus_10965#1 TTGCTGA----------------------------------------------------- 1088
consensus_10965#0 AAATGAAACTGAACATACGCCCACTTTTGCGTTTGATATTTAGACGATTCTTTGGCGATT 1245
consensus_10965#4 ------------------------------------------------------------
consensus_10965#2 ----------------------------------------------------------
consensus_10965#3 ----------------------------------------------------------
consensus_10965#1 ----------------------------------------------------------
consensus_10965#0 TCTCTGGATTTGTGAATATGTGTGCCGAACATATACCAAGTCCATCTAACTCAGCCGC 1303
consensus_10965#4 ----------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||