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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_10975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 964 fasta sequence
[ACCTTAACGGTGAAGATGAGATACATTCTTCCTTCTAGTTTCTTCATATCAACTTGTTTATTGGTCATTCTATTGACCAAGTTCTTTAATTGTCAGTTTACTTGTGAACACATCAAAAATGTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAAATTGAAATGCCTACTAAAAAGGTTACTCCAAAGTCTGAATTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAATAGATATCCTGAAGGAGGTTCGGTACCTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATCGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACCTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGA-TTAATAATTGTTCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAGATGGATAACAAAAGTGATCAAAAGGATAACAAAAGTGTTCCAAAGGATAACAAAAGTGTTCTCAAAGGGT]
[-] EMBL CD148209 [ACCTTAACGGTGAAGATGAGATACATTCTTCCTTCTAGTTTCTTCATATCAACTTGTTTATTGGTCATTCTATTGACCAAGTTCTTTAATTGTCAGTTTACTTGTGAACACATCAAAAATGTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAAATTGAAATGCCTACTAAA ]
[-] EMBL CD147949 [ TTAACGGTGAAGATGAGATATATTCTACCTTCTAGTTTCTTAATACCAACTTGTTTATTGGTCATTCTATTGACCAAGTTCATTAATTGTCAGTTTACTTGTGATCACATCAAAAATGTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGGGATTATGTCAAAATTGAAATGCCTACTCAA ]
[+] EMBL CD118172 [ ATATTCGGATCATTATGAATACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAAATTGAAATGCCTACTAAAAAGGTTACTCCAAAGTCTGAATTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGA ]
[+] EMBL CD114883 [ AAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTTTAACAATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCTGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGA TTAATAATTGTTCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATA ]
[+] EMBL CD113139 [ AAATAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAGATGGGAAGATGTCTCTCTACTTTAACGATATACCCAGGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAAAAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTCTCAAATGAAACATGTTTAAGTGCATCGAAACC ]
[+] EMBL CD144525 [ AAATAGATATCCTGAAGGAGGTTCGATACTTTATCTGATATATCCAAATGGGAAGATGTCTCTTTACTTTAACAATATACCCCAGGAAATTGTTGGAGAAAGTTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAAGAAACTTTATCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACC ]
[+] EMBL CD113041 [ AAATAGATATTCTGAAGGAGGTTCGGTACCTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAGGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCG ACCATACAATCGAACTCAGATTCCAAAAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAACATGTTTAAGTGCATCGAAACC ]
[+] EMBL CD144495 [ actTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACt ]
[-] EMBL CD121883 [ GTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTAGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGA TTAATAATTGTCCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAGA ]
[+] EMBL AW400407 [ TCGAATTCACGTTCCAATAAACTTTATCAAATTTGATACTTTAGTGGAGTTTGAACCAAATACAAAAAGTTGTTTCATGAAGGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACCTGATATGGAATGTCATTGGTGTTCAACAGCTGATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTTAATAATTGTTCAAAGAATAATATGCAAAAGGATAACAAAAGTGAACAAATGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAAAAGGATAACAAAAGTGTTCCAAAGGATAACAAAAGTGTTCTCAAAGGGT]
consensusID : consensus_10975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence
[CTCGGAGCCAANATTCGGCACGAGGAGACCTAATTATTTCGACGACTACAATAAGTCAGAATACCTATGTAGGAAGCATCATGGAAAGCAAACTGATAATATTAGCATACATACTGTGTGTGTGTGTGACTAGTTGTCTTTGAATATGATGACCTAATGAATGACATACTACTGAAATGATTAGTTGCTTTTGATCTAGGTGGTTGTGTGTTTGACAGATCTTGGCTTATATATCCCATGCTTATTTCCAGATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTCCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACANATGGATAACANAAGTGATCAGA]
[+] EMBL CD080555 [CTCGGAGCCAANATTCGGCACGAGGAGACCTAATTATTTCGACGACTACAATAAGTCAGAATACCTATGTAGGAAGCATCATGGAAAGCAAACTGATAATATTAGCATACATACTGTGTGTGTGTGTGACTAGTTGTCTTTGAATATGATGACCTAATGAATGACATACTACTGAAATGATTAGTTGCTTTTGATCTAGGTGGTTGTGTGTTTGACAGATCTTGGCTTATATATCCCATGCTTATTTCCAGATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAATGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAATCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTCCAAAGAATAATATGAAAAAGGATAAGAAAAGTGAACANATGGATAACANAAGTGATCAGA]
consensusID : consensus_10975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 588 fasta sequence
[TGTAATAGAAATACGCGGAGTCGATTTAATAGGAAAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTCATCGCTATCAAATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAGGTAACTTATATGATACATTTAAATGGAAAGATGTCTCTTTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTTATTGGTGTTCAACAGCTAATCTGTGTAGTAATGGTCATGATACACAATCGAAGGATTGGATGATTAATAATTGTCCAAAGATTAATATGCAAATGGATAAGAAAAGTGATCAGAAGGATAACAAGTCAATGTTTAATTACCTATATGTTTTGATACC]
[+] EMBL CD152562 [TGTAATAGAAATACGCGGAGTCGATTTAATAGGAAAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTCATCGCTATCAAATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAGGTAACTTATATGATACATTTAAATGGAAAGATGTCTCTTTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTA ]
[-] EMBL CD097367 [ AATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAGGTAACTTATATGATACATTTAAATGGAAAGATGTCTCTTTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTTATTGGTGTTCAACAGCTAATCTGTGTAGTAATGGTCATGATACACAATCGAAGGATTGGATGATTAATAATTGTCCAAAGATTAATATGCAAATGGATAAGAAAAGTGATCAGAAGGATAACAAGTCAATGTTTAATTACCTATATGTTTTGATACC]
[-] EMBL CD117579 [ TTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCACACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAA ]
[-] EMBL CD117478 [ TTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAAAAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAA ]
consensusID : consensus_10975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 535 fasta sequence
[GCANAAAACAATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAAAAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCCTCGAAACCTGATATGAAATGTCATTTGGTGTT]
[+] EMBL CD152883 [GCANAAAACAATATGTTGCTNAAAAGGTTACTNCAAAGTTTGCACTTAAATATTATGGTCAAACAGATNAAGAATTATCCATTTCAAATTCTGGTGCNNTAGAAATACACGGAGAAGATTTATTAGGACAAA ]
[+] EMBL CD152656 [ ATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAAAAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCCTCGAAACCTGATATGAAATGTCATTTGGTGTT]
[+] EMBL CD152630 [ ATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAAAAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAATGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTCA TTGGTGTT]
[+] EMBL CD152628 [ ATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAAAATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAGGTAGTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACTTTAACGAATTACCCAAGGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAAACAAAACAATACTGTTTTCG ]
consensusID : consensus_10975#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 511 fasta sequence
[AAACAATTCGTCTTGATCAGAAACTTCCTGTTGTAAGTGGAGATTTATCCAAAAAACAATCTTTTGTTCAAAAGATTACTCCAAAGTTTCCACTTAAATATTATGGTCAAAAAGTTAAAGAATTATCCATTTTAAATTCTGGTGTAATAGAAATATACGGAGACGATTTAATAGGACAAATTCATATTTTTCAAAAAATCACCTTTGAAGAGAATTTTAATACTGCAAATGAAAATGAATTCATCGCTGTCGCATGGCACGTTAACGAACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAG]
[+] EMBL CD084354 [AAACAATTCGTCTTGATCAGAAACTTCCTGTTGTAAGTGGAGATTTATCCAAAAAACAATCTTTTGTTCAAAAGATTACTCCAAAGTTTCCACTTAAATATTATGGTCAAAAAGTTAAAGAATTATCCATTTTAAATTCTGGTGTAATAGAAATATACGGAGACGATTTAATAGGACAAATTCATATTTTTCAAAAAATCACCTTTGAAGAGAATTTTAATACTGCAAATGAAAATGAATTCATCGCTGTCGCATGGCACGTTAACGAACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACCCAAGGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAAAGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAG]
consensusID : consensus_10975#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 296 fasta sequence
[ACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACTTAAAGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCGAAGGAAACATGTTTAAATGCATCGAAACCTGATA]
[+] EMBL CD150660 [ACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACTTAAAGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCGAAGGAAACATGTTTAAATGCATCGAAACCTGATA]
[+] EMBL CD113127 [ACGTAGATATTCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTCTCTCTACTTTAACGATATACTTAAAGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAAACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAAAAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAAGGAAACATGTTTAAATGCATCGAAACC ]
consensusID : consensus_10975#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 244 fasta sequence
[GGATTGCATAGAGAATACTGGTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTT]
[-] EMBL CD116753 [GGATTGCATAGAGAATACTGGTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTT]
[-] EMBL CD116662 [GGATTGCATAGAGAATACTGGTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATAGGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAAGATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAGGTAACTTATATGATACATTCAAATGGAAAGATGTCTCTTTACTT]
consensusID : consensus_10975#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[TAATCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTTAAATTCTGGTAAGCAGGCCTAAAATGATCTTGAAAATGTTCATCTATGTATTAAGGTTAAGTAAAGGTTTAAAGTTTCATGCACCTAGGAAGCATCGTTTGATAAACAAGGAGGATCAGATGCGGATGTAAAGGCGAG]
[+] EMBL CD123618 [TAATCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTTAAAGAATTATCCATTTTAAATTCTGGTAAGCAGGCCTAAAATGATCTTGAAAATGTTCATCTATGTATTAAGGTTAAGTAAAGGTTTAAAGTTTCATGCACCTAGGAAGCATCGTTTGATAAACAAGGAGGATCAGATGCGGATGTAAAGGCGAG]
consensusID : consensus_10975#8 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence
[ACATATGGATAACAAAAGTGATCAGAAGGATAAGAAAAGTGCAACAAATGGATAACAAAAGTGATCAGAAGGATAACAAGCCAATGTTTAATTACCTATATGTTTTGATACCATCAGTCATTGGTCTCGTCATTGTATGCGTTGGCTTCATCGTGTGGTTC]
[+] EMBL AI618986 [ACATATGGATAACAAAAGTGATCAGAAGGATAAGAAAAGTGCAACAAATGGATAACAAAAGTGATCAGAAGGATAACAAGCCAATGTTTAATTACCTATATGTTTTGATACCATCAGTCATTGGTCTCGTCATTGTATGCGTTGGCTTCATCGTGTGGTTC]
consensusID : consensus_10975#9 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 109 fasta sequence
[AAATAGATATCCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACATTGAAAAAATACTTAAAGAATTTGATGAATATAATTCGCAA]
[+] EMBL CD113063 [AAATAGATATCCTGAAGGAGGTTCGGTACTTTATCTGATATATCCAAATGGGAAGATGTTTATTTACATTGAAAAAATACTTAAAGAATTTGATGAATATAATTCGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ------------------------------------------------------------
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 ACCTTAACGGTGAAGATGAGATACATTCTTCCTTCTAGTTTCTTCATATCAACTTGTTTA 60
consensus_10975#2 ------------------------------------------------------------
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 ------------------------------------------------------------
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ------------------------------------------------------------
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 TTGGTCATTCTATTGACCAAGTTCTTTAATTGTCAGTTTACTTGTGAACACATCAAAAAT 120
consensus_10975#2 ------------------------------------------------------------
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 ------------------------------------------------------------
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ------------------------------------------------------------
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 GTAAAATATGAAAAGATCATTTCAGAAAATGCCACATATAGATATTCGGATCATTATGAA 180
consensus_10975#2 ------------------------------------------------------------
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 ------------------------------------------------------------
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 -------------------------------------------------------GCANA 5
consensus_10975#4 -------AAACAATTCGTCTTGATCAGAAACTTCCTGTTGTAAGTGGAGATTTATCCAAA 53
consensus_10975#0 TACTTTCAAACGGTTCTTGTTGAACAGCCACCTCCTGTTGTAAGTGGAGATTATGTCAAA 240
consensus_10975#2 ------------------------------------------------------------
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 ------------------------------------------------------------
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 AAACAATATGTTGCTCAAAAGGTTACTCCAAAGTTTCCACTTAAATATTATGGTCAAACA 65
consensus_10975#4 AAACAATCTTTTGTTCAAAAGATTACTCCAAAGTTTCCACTTAAATATTATGGTCAAAAA 113
consensus_10975#0 ATTGAAATGCCTACTAAAAAGGTTACTCCAAAGTCTGAATTTAAATATTATGGTCAAACA 300
consensus_10975#2 ------------------------------------------------------------
consensus_10975#6 ----------------------------------------GGATTGCATAGAGAATACTG 20
consensus_10975#1 -----------------------------------CTCGGAGCCAANATTCGGCACGAGG 25
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 GTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATA 125
consensus_10975#4 GTTAAAGAATTATCCATTTTAAATTCTGGTGTAATAGAAATATACGGAGACGATTTAATA 173
consensus_10975#0 GTTAAAGAATTATCCATTTCAAATTCTGGTGCAATAGAAATACACGGAGAAGATTTAATA 360
consensus_10975#2 -----------------------------TGTAATAGAAATACGCGGAGTCGATTTAATA 31
consensus_10975#6 GTGTGTGGCTCGACGAGGGTGTAAGTATGTGCAATAGAAATACACGGAGAAGATTTAATA 80
consensus_10975#1 AGACCTAATTATTTCGACGACTACAATAAGTCAGAATACCTATGTAGGAAGCATCATGGA 85
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 GGACAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAA 185
consensus_10975#4 GGACAAATTCATATTTTTCAAAAAATCACCTTTGAAGAGAATTTTAATACTGCAAATGAA 233
consensus_10975#0 GGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAA 420
consensus_10975#2 GGAAAAATTCATATTTTTCAAAATATCACCTTTGAAGAGAATTTTGATAGTGCAAATGAA 91
consensus_10975#6 GGACAAATTAGTATTTTTCAAAATATCACCTTTGAAGACACATTTGAGGTTAATGATAAA 140
consensus_10975#1 AAGCAAACTGATAATATT-AGCATACATACTGTGTGTGTGTGTGACTAGTTGTCTTTGAA 144
consensus_10975#8 -----------------------------ACATATGGATAACAAAAGTGATCAGAAGGAT 31
consensus_10975#7 --------------------TAATCCAAAGTTTCCACTTAAATATTATGGTCAAACAGTT 40
consensus_10975#5 -----------------------------------ACGTAGATATTCTGAAGGAGGTTCG 25
consensus_10975#9 -----------------------------------AAATAGATATCCTGAAGGAGGTTCG 25
consensus_10975#3 AATGAATTAATCGCTGTCGCATGGTATGTTCACAAACGTAGATATCCTGAAGGAGGTCAG 245
consensus_10975#4 AATGAATTCATCGCTGTCGCATGGCACGTTAACGAACGTAGATATTCTGAAGGAGGTTCG 293
consensus_10975#0 GATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAATAGATATCCTGAAGGAGGTTCG 480
consensus_10975#2 AATGAATTCATCGCTATCAAATGGAATGTACTGAAAAGTGTATATCCTGAAGGAGGTGAG 151
consensus_10975#6 GATAAATTCATCGCTATCAAACGGAAAGTACTGAAAAGTGTATATCCTGAAGAAGGTGAG 200
consensus_10975#1 TATGATGACCTAATGAATGACATACTACTGAAATGATTAGTTGCTTTTGATCTAGGT--G 202
consensus_10975#8 AAGAAAAGTGCAACAAATGGATAACAAAAGTGATCAGAAGGATAA-CAAGCCAATGTTTA 90
consensus_10975#7 AAAGAATTATCCATT-TTAAATTCTGGTAAGCAGGCCTAAAATGATCTTGAAAATGTTCA 99
* **
consensus_10975#5 GTACTTTATCTGATATATCCAAATGGGAAGATGTC-TCTCTACTTTAACGATATACTTAA 84
consensus_10975#9 GTACTTTATCTGATATATCCAAATGGGAAGATGTT-TATTTACATTGAAAAAATACTTAA 84
consensus_10975#3 GTAGTTTATCTGATATATCCAAATGGGAAGATGTT-TATTTACTTTAACGAATTACCCAA 304
consensus_10975#4 GTACTTTATCTGATATATCCAAATGGGAAGATGTC-TCTCTACTTTAACGATATACCCAA 352
consensus_10975#0 GTACCTTATCTGATATATCCAAATGGGAAGATGTC-TCTCTACTTTAACGATATACCCAA 539
consensus_10975#2 GTAACTTATATGATACATTTAAATGGAAAGATGTC-TCTTTACTTTAACGATATACCCAA 210
consensus_10975#6 GTAACTTATATGATACATTCAAATGGAAAGATGTC-TCTTTACTT--------------- 244
consensus_10975#1 GTTGTGTGTTTGACAGATCTTGGCTTATATATCCCATGCTTATTT---CCAGATACCCAA 259
consensus_10975#8 ATTACCTATATGTTTTGATACCATCAGTCATTGGTCTCGTCATTGTATGCGTTGGCTTCA 150
consensus_10975#7 TCTATGTATTAAGGTTAAGTAAAGGTTTAAAGTTTCATGCACCTAGGAAGCATCGTTTGA 159
* *
consensus_10975#5 AGAATTTGATGAAAATAATTTGCAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 144
consensus_10975#9 AGAATTTGATGAATATAATTCGCAA----------------------------------- 109
consensus_10975#3 GGGAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGACAAAAATGTTTAGATAA 364
consensus_10975#4 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 412
consensus_10975#0 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 599
consensus_10975#2 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 270
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 GGAAATTGTTGGAGAAAATTTGGAATCGTGGATTGATTATCGATACAAATGTTTAGACAA 319
consensus_10975#8 TCGTGTGGTTC------------------------------------------------- 161
consensus_10975#7 TAAACAAGGAGGATCAGATGCGGATGTAAAGGCGAG------------------------ 195
consensus_10975#5 ACAAGCCAATACTGTTTTCGAACCATACAATCGAATTCACGTTCCAATAAACTTTATCAA 204
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCGATAAACTTGACCAA 424
consensus_10975#4 ACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAA 472
consensus_10975#0 ACAAAACAATACTGTTTCCGAACCATACAATCGAATTCAGATTCCAAAAAACTTTATCAA 659
consensus_10975#2 ACAAAACAATACTGTTTTCGAACCATACAATCGAATTCAGATTCCAATAAACTTGACCAA 330
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 ACAAAACAATACTGTTTCCGAACCATACAATAGAATTCAGATTCCAAAAAACTTTATCAA 379
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 AAGTCGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCGAA 264
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 AAGTGATACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAA 484
consensus_10975#4 AGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAG--------------------- 511
consensus_10975#0 AGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAA 719
consensus_10975#2 AAGTGGTACTTTAGTGGAGTTTGAACCGAATACAGAAAGTTGTTTTATGAAAGTTTCAAA 390
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 AGGTGGTACTTTTGTGGAGTTTGAACCGAATACAGAAAGTTGTTTCATGAAAGTTTCAAA 439
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 GGAAACATGTTTAAATGCATCGAAACCTGATA---------------------------- 296
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 TGAAACATGTTTAAATGCCTCGAAACCTGATATGAAATGTCATTTGGTGTT--------- 535
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 TGAAGCATGTTTAAGTGCATCGAAACCTGATATGGAATGTCATTGGTGTTTAACAGCTAA 779
consensus_10975#2 TGAAACATGTTTAAATGCATCGAAACCTGATATGAAATGTTATTGGTGTTCAACAGCTAA 450
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 TGAAGCATGTTTAAGTGCATCGAAACTTGATATGGAATGTCATTGGTGTTTAACAGCTAA 499
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ------------------------------------------------------------
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 TCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTTCAAA 839
consensus_10975#2 TCTGTGTAGTAATGGTCATGATACACAATCGAAGGATTGGATGATTAATAATTGTCCAAA 510
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 TCTGTGTAGTAATGGTCGTGATACACATTCGAAGGCTTGGATGATTAATAATTGTCCAAA 559
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ------------------------------------------------------------
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 GAATAATATGAAAAAGGATAAGAAAAGTGAACAAATGGATAACAAAAGTGATCAGATGGA 899
consensus_10975#2 GATTAATATGCAAATGGATAAGAAAAGTGATCAGAAGGATAACAAGTCAATGTTTAATTA 570
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 GAATAATATGAAAAAGGATAAGAAAAGTGAACANATGGATAACANAAGTGATCAGA---- 615
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 ------------------------------------------------------------
consensus_10975#9 ------------------------------------------------------------
consensus_10975#3 ------------------------------------------------------------
consensus_10975#4 ------------------------------------------------------------
consensus_10975#0 TAACAAAAGTGATCAAAAGGATAACAAAAGTGTTCCAAAGGATAACAAAAGTGTTCTCAA 959
consensus_10975#2 CCTATATGTTTTGATACC------------------------------------------ 588
consensus_10975#6 ------------------------------------------------------------
consensus_10975#1 ------------------------------------------------------------
consensus_10975#8 ------------------------------------------------------------
consensus_10975#7 ------------------------------------------------------------
consensus_10975#5 -----
consensus_10975#9 -----
consensus_10975#3 -----
consensus_10975#4 -----
consensus_10975#0 AGGGT 964
consensus_10975#2 -----
consensus_10975#6 -----
consensus_10975#1 -----
consensus_10975#8 -----
consensus_10975#7 -----
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||