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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11025#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1083 fasta sequence
[TTACATACATATTGAAGCAAAACAGTAATAAAAGACTTACGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTATTGACTGATAATGTTCCAGTTGTAGGTGCAATCGGGTTCTTATTTACAGTGACTGTGTCTGTTATGAAATCGGTATTTTTGCTCGAGACATCTTGACATCCTTTTAAGAATTCACTATTATCATGGTGAGTTTGACTTTTGTTTAAACTCTGGAACATTTCATCATTCTTTGAAATATTCTTCTGCTCTGAATACGTCGACAATCGTCCATTTTTACACGCAAATCTTGGAAGTCCTTTGACAGGATTCTGGGGTACTTGCAATTCCTCTAATTGTTGCATCAAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGGTTTTATTTTGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACACATTACCAGACGATATTGCAAGTCTTTATTAATTCTTTTCAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTGTAGGAAAGTTATGCTGTTGTCTAGTAGGACTTTACGACTGTCGTCATCTAGTTTAGGAGGGCTGATAACAGGTGCTTCTCTTTTACTGGAAGGGAACATAATAGTCTCAACTTTCTTATCTCCAAGTGCATCAGTTTTGGTAGGAAAATTATTAAGAACAATCATAGTCAAGAATTCAGTCTACGGAAACGAAAGTGCGATTAAGTATTTCATATGCATTGT]
[+] EMBL CD128372 [TTACATACATATAGAAGC AAACAGTAATAAAAGACTTACGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTT ]
[+] EMBL CD128199 [ ATATTGAAGCAAAACAGTAATAAAAGACTTACGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGC TTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATA ]
[-] EMBL CD128307 [ TGAAGCAAAACAGTAATAAAAGACTTACGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGACTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTATTGACTGATAAag ]
[-] EMBL CD197594 [ TTTCTTCATTTTTAAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTATTGACTGATAATGTTCCAGTTGTAGGTGCAATCGGGTTCTTATTTACAGTGACTGTGTCTGTTATGAAATCGGTATTTTTGCTCGAGACATCTTGACACCCTTTTAAGAATTCACTATTATCATGGTGAGTTTGACTTTTGTTTAAACTCTGGAA ]
[+] EMBL CD069360 [ CATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTCTTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTATTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCACTAAATTATTTCCTGGT ]
[-] EMBL CD144857 [ CTCAGTGAAGCTGGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTGGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTATTGACTGATAATGTTCCAGTTGTAGGTGCAATCGGGTTCTTATTTACAGTGACTGTGTCTGTTATGAAATCGGTATTTTTGCTCGAGACAT ]
[-] EMBL CD156763 [ AGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTGTTGACTGATAATGTTCCAGTTGTAGGTGCAATCGGGTTCTTATTTACAGTGACTGTGTCTGTTATGAAATCGGTATTTTTGCTCGAGACATCTTGACATCCTTTTAAGAATTCACTATTATCATGGTGAGTTTGACTTTTGTTTAAACTCTGGAACATTTCATCATTCTTTGAAATATTCTTCTGCTCTGAATACGTCGACAATCGTCCATTTTTACACGCAAATCTTGGAAGTCCTTTGACAGGATTCTGGGGTACTTGCAATTCCTCTAATTGTTGCATCAAACGTGCATTCT ]
[+] EMBL CD133145 [ ttgTCCTGGTATACTCAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTATTGACTGATAATGTTCCAGTTGTAGGTGCAATCGGGTTCTTATTTACAGTGACTGTGTCTGTTATGAAATCGGTATTTTTGCTCGAGACATCTTGACATCCTTTTAAGAATTCACTATTATCATGGTGAGTTTGACTTTTGTTTACACTCTGGAACATTTCATCATTCTTTGAAATATTCTTCTGCTCTGAATACGTCGACAATCGTCCATTTTTACACGCAAATCTTGGAAGTCCTTTGACAGGATTCTGGGGTACTTGCAATTCCTCTAATCGTTGCATCAAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCGATATTTCCTGTTTTAAGGAGTTCTCTTCTTTGGTTTCATTTCGGGGGAAATAATCATCAAAATAGCCAGCAGAACACGTACCCATTACCAGACGATATTGCAAGTCTTTATTAATTCTTTTCAAGGACTCAATCT ]
[-] EMBL CD180120 [ TTGACATCCTTTTAAGAATTCACTATTATCATGGTGAGTTTGACTTTTGTTTAAACTCTGGAACATTTCATCATTCTTTGAAATATTCTTCTGCTCTGAATACGTCGACAATCGTCCATTTTTACACGCAAATCTTGGAAGTCCTTTGACAGGATTCTGGGGTACTTGCAATTCCTCTAATTGTTGCATCAAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCGA ]
[-] EMBL CD192218 [ TTTAAGAATTCACTATTATCATGGTGAGTTTGACTTTTGTTTAAACTCTGGAACATTTCATCATTCTTTGAAATATTCTTCTGCTCTGAATACGTCGACAATCGTCCATTTTTACACGCAAATCTTGGAAGTCCTTTGACAGG ]
[-] EMBL CD131511 [ CTTGGAAGTCCTTTGACTGGATTCTGGGGTACTTGCAATTCCTCTAATTGTTGCATCAAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGGTTTTATTTTGTGGTAAATAATCATC ]
[+] EMBL CD148016 [ TCCTTTGACAGGATTCTGGGGTACTTGCAATTCCTCTAATTGTTGCATCAAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGGTTTTATTTTGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACACATTACCAGACGATATTGCAAGTCTTTATTAATTCTTTTCAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTGTAGGAAAGTT ]
[-] EMBL CD185784 [ TTCCTCTAATTGTTGCATCAAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGGTTTTATTTTGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACACATTACCAGACGATATTGCAAGTCTTTATTAATTCTTTTCAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTGTAGGAAAGTTATGCTGTTGTCTAGTAGGACTTTACGACTGTCGTCATCTAGTTTAGGAGGGCTGATAACAGGTGCTTCTCTTTTACTGGAAGGGAACATAATAGTCTCAACTTTCTTATCTCCAAGTGCATCAGTTTTGGTAGGAAAATTATTAAGAACAATCATAGTCAAGAATTCAGTCTACGGAAACGAAAGTGCGATTAAGTATTTCATATGCATTGT]
consensusID : consensus_11025#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 953 fasta sequence
[AATTATTATTATTAATTTTTGATCATGATAGAAGAAATGAATTAAACAATCTTTAAAACAATAATTAGAACCAATAAAAATACCGTTTTGTCTTTATAAAACTGTTTTTTCTTTCATGTAATAAACTAGGTAAACGTTTACTTACAGCATTTTAATAATTTAATCTTTGAAATTGATCTAAGTGGAATTCCATTTGAGA-GTTAAATTTGTTGCATGTCTTTATCATTGGGCATTGAACTATTCCACTGACAATATGTCTGCTGCCATCTATAATTAAAACAGTTTTCAATATTCAACAAGCATAATTCATTTAAACGAATGCAA-TTAGAAGCCCCCACTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGTTATTTTTATTTAAACAAAATTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGT-TTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTG-CACGCTTACGATGTAAGCTTTTCGTAGATTTCTTTTGATGACGATCGTTTTGACGATTCATCATTACATCTGCTGGTTTTGTTAATGACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAACTTTTCTTAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCAATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAATCAAATGATGAATTAATCAA]
[+] EMBL BF936262 [AATTATTATTATTAATTTTTGATCATGATAGAAGAAATGAATTAAACAATCTTTAAAACAATAATTAGAACCAATAAAAATACCGTTTTGTCTTTATAAAACTGTTTTTTCTTTCATGTAATAAACTAGGTAAACGTTTACTTACAGCATTTTAATAATTTAATCTTTGAAATTGATCTAAGTGGAATTCCATTTGAGA GTTAAATTTGTTGCATGTCTTTATCATTGGGCATTGAACTATTCCACTGACAATATGTCTGCTGCCATCTATAATTAAAA ]
[-] EMBL SMAA85770 [ ACCCGTTTGTCTTTATAAAACTGTTTTTTCTTTCATGTAATAAACTAGGTAAACGTTTACTTACAGCATTTTAATAATTTAATCTTTGAAATTGATCTAAGTGGAATTCCATTTGAGA GTTAAATTTGTTGCATGTCTTTATCATTGGGCATTGAACTATTCCACTGACAATATGTCTGCTGCCATCTATAATTAAAACAGTTTTCAATATTCAACAAGCATAATTCATTTAAACGAATGCAA TTAGAAGCCCCCACTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGTTATTTTTATTTAAACAAAATTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGT TTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTGCCACGCTTACGATGTAAGC ]
[-] EMBL SMAA8289 [ AAAACTGTTTTTTCTTTCATGTAATAAACTAGGTAAACGTTTACTTACAGCATTTTAATAATTTAATCTTTGAAATTGATCTAAGTGGAA TCCATTTGAGA G TAAATTTG TGCATGTCTTTATCATTGGGCATTGAACTATTCCACTGACAATATGNCTGCTGCCATCTATAATTAAAACAGTTTTCAATATTCAACAAGCATAATTCATTTAAACGAATGCAA TTAGAAGCCCCCACTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGTTATTTTTATTTAAACAAAATTCCAATGCCAA TTTCTTTTTCAAATTGAATTTTCGTNNTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTG CACGCTTACGATGTAAGCTTTTCGT ]
[-] EMBL SMAA85815 [ TAATAATTTAATCTTTGAAATTGATCTAAGTGGAATTCCATTTGAGA GTTAAATTTGTTGCATGTCTTTATCATTGGGCATTGAACTATTCCACTGACAATATGTCTGCTGCCATCTATAATTAAAACAGTTTTCAATATTCAACAAGCATAATTCATTTAAACGAATGCAA TTAGAAGCCCCCACTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGTTATTTTTATTTAAACAAAATTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGT TTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTG CACGCTTACGATGTAAGC ]
[-] EMBL SMAA8273 [ GAGAGGTTAAA TTGTTGCATGTCTTTATCATT GGCATTGAACTATTCCACTGACAATATGTCTGCTGCCATCTATAATTAAAACAGTTTTCAATATTCAACAAGCATAATTCATTTAAACGAATGCAA TTAGAAGCCCCCACTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGTTATTTTTATTTAAACAAAATTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGT TTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTG CACGCTTACGATGTAAGC ]
[-] EMBL SMAA85793 [ TAAACGAATGCAATTTGGAAGCCCCCACTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGTTATTTTTATTTAAACAAAATTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGT TTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTG CACGCTTACGATGTAAGC ]
[-] EMBL CD194923 [ TGGAATG TATTTTTATTTAAACAAATTTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGT TTCAAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTG CACGCTTACGATGTAAGCTTTTCGTAGATTTCTTTTGATGACGATCGTTTTGACGATTCATCATTACATCTGCTGGTTTTGTTAATGACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAACTTTTCTTAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCAATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAATCAAATGATGAATTAATCAA]
[-] EMBL CD061409 [ GTAAGCTTTTCGTAGATTTCTTTGGATGACGATCGTTTTGACGATTCATCATGACATCTGCTGGTTTTGTTAATGACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAACTTTTCTGAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCAATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATCCTTCTG CCTGT ]
consensusID : consensus_11025#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 460 fasta sequence
[GACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAACTTTTCTTAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCAATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCA--TTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTCTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTAT]
[-] EMBL CD189896 [GACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAACTTTTCTTAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCAATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCA TTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAGTGAAGCTTGAATAAGTGGTCTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTAT]
[-] EMBL CD128477 [ AAATCATGTAATTATTGTTGAAGATCATGTGAGGTTTTTGAACCANTCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTA TGAATGTTTCTTCA TTTTTTAATG ACCACGTGg ]
[+] EMBL CD128509 [ TCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCATTTTTTTTAGTGAACCACGTGTAGGTGAATGCTTTGGATTGTTTGTATTTATTTTATATTGT ]
consensusID : consensus_11025#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence
[CAATTCCTCTAATTGTTGCATCGAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGGTTTTATTTTGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACACATTACCAGACGATATTGCAAGTCTGAAAAAATAGAAGTATACGAAATATCCACAACCTTTATTAATTCTTTTCAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTGTAGGAAAGTTATGCTCTTGTCTAGTAGGACTTTACGACTGTCGTCATCTAGTTTAGGAGGGCTGATAACAGGTGCTTCTCTTTTACTGGAAGGGAACATAATAGTCTCAACT]
[-] EMBL CD188361 [CAATTCCTCTAATTGTTGCATCGAACGTGCATTCTTCTTCCTTTCGTTTTCAAGATCTTCCCGCAAAATCCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGGTTTTATTTTGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACACATTACCAGACGATATTGCAAGTCTGAAAAAATAGAAGTATACGAAATATCCACAACCTTTATTAATTCTTTTCAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTGTAGGAAAGTTATGCTCTTGTCTAGTAGGACTTTACGACTGTCGTCATCTAGTTTAGGAGGGCTGATAACAGGTGCTTCTCTTTTACTGGAAGGGAACATAATAGTCTCAACT]
consensusID : consensus_11025#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 339 fasta sequence
[TGAGCTATTGTTGTGCCCGGTGGCACTTCTGATTGGACGAGATATTTTTAATTCGCTATTGAATCTATTTCGATTAATAGAAAAGCTTTGAAAAAAGAAACATTCATTCACTGAATGATTAGTAAACAGATACAGATCTATATGCCGAACAAAATTTACTCACAATATTGTGAAGAATATTCACAAAGGGATATGTTGTGGTAGAACGAATGTCGAAGAAAGTGTAACTTTTGCGATTAATTTACGGCTAGCTACTATTCATATCTTTATTGTGTAATTAGTAGATCACTGCATTACTGTATGTCTATATTCGTCATACTCGTAGCTTCGAATGACTCA]
[+] EMBL CD195994 [TGAGCTATTGTTGTGCCCGGTGGCACTTCTGATTGGACGAGATATTTTTAATTCGCTATTGAATCTATTTCGATTAATAGAAAAGCTTTGAAAAAAGAAACATTCATTCACTGAATGATTAGTAAACAGATACAGATCTATATGCCGAACAAAATTTACTCACAATATTGTGAAGAATATTCACAAAGGGATATGTTGTGGTAGAACGAATGTCGAAGAAAGTGTAACTTTTGCGATTAATTTACGGCTAGCTACTATTCATATCTTTATTGTGTAATTAGTAGATCACTGCATTACTGTATGTCTATATTCGTCATACTCGTAGCTTCGAATGACTCA]
[+] EMBL CD195924 [TGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATCTATTTCGTTTAATAGAAAAGTTTTGAAAAAAGAAACATTCATTCACTGAATGATTAGTAAACAGAAACAGAAATATAAGCCGAACAAAATTTACTCACAATATTGTGAA ]
consensusID : consensus_11025#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[ATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCGATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTACATTGTTCATTACTCTGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATACAGGTAATCGAAATGGTAATAAGTGCGCTCAGGATTTT]
[-] EMBL CD065785 [ATGTAATTGTTGTTGAAGATCATGTGAGGTTTTTGAACCGATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTGTGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCATTTTTTAATGAACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTACATTGTTCATTACTCTGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATACAGGTAATCGAAATGGTAATAAGTGCGCTCAGGATTTT]
consensusID : consensus_11025#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 112 fasta sequence
[AAACGAAAGTGCGATTAAGTATTTCATATGCATTGTATCCTTGTTCCCAGTTGAGGTTCCTAGATTTAAAACCTATGGACGAATTCGTCCTCTTAATTAGTGAGCCAAAGCC]
[+] EMBL BG932740 [AAACGAAAGTGCGATTAAGTATTTCATATGCATTGTATCCTTGTTCCCAGTTGAGGTTCCTAGATTTAAAACCTATGGACGAATTCGTCCTCTTAATTAGTGAGCCAAAGCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11025#1 -----------------------AATTATTATTATTAATTTTTGATCATGATAGAAGAAA 37
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 TTACATACATATTGAAGCAAAACAGTAATAAAAGACTTACGTTTCTTCATTTTTTAATGA 60
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 TGAATTAAACAATCTTTAAAACAATAATTAGAACCAATAAAAATACCGTTTTGTCTTTAT 97
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 ACCACGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATTGTTCATTACTCAG 120
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 AAAACTGTTTTTTCTTTCATGTAATAAACTAGGTAAACGTTTACTTACAGCATTTTAATA 157
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 TGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAAATGGTAATAAGTG 180
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 ATTTAATCTTTGAAATTGATCTAAGTGGAATTCCATTTGAGAGTTAAATTTGTTGCATGT 217
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 TGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGTTTTTCAAAAACATG 240
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 CTTTATCATTGGGCATTGAACTATTCCACTGACAATATGTCTGCTGCCATCTATAATTAA 277
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 TTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTATTTCCTGGTATACT 300
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 AACAGTTTTCAATATTCAACAAGCATAATTCATTTAAACGAATGCAATTAGAAGCCCCCA 337
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 CAGCGTTGTTGATGATTTATTTGGAACTGAATGAGAAGTGGTTGGTATAAGTTTATTGAC 360
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 CTGCATGATTTACCACTTTATCAGTTTAATGAAGATTGAAAATAGAAATATATGGAATGT 397
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 TGATAATGTTCCAGTTGTAGGTGCAATCGGGTTCTTATTTACAGTGACTGTGTCTGTTAT 420
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 TATTTTTATTTAAACAAAATTCCAATGCCAATTTTCTTTTTCAAATTGAATTTTCGTTTC 457
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 GAAATCGGTATTTTTGCTCGAGACATCTTGACATCCTTTTAAGAATTCACTATTATCATG 480
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 AAATGTTACTATTATTATCACCATTTAAAAAGGTTGAATGTTTTGTTGTGCACGCTTACG 517
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 GTGAGTTTGACTTTTGTTTAAACTCTGGAACATTTCATCATTCTTTGAAATATTCTTCTG 540
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 ATGTAAGCTTTTCGTAGATTTCTTTTGATGACGATCGTTTTGACGATTCATCATTACATC 577
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ------------------------------------------------------------
consensus_11025#0 CTCTGAATACGTCGACAATCGTCCATTTTTACACGCAAATCTTGGAAGTCCTTTGACAGG 600
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 TGCTGGTTTTGTTAATGACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAAC 637
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 ----------------GACGGTAGAAATGGTTTTAATCCGATTGAATAAGCTTGTGTAAC 44
consensus_11025#0 ATTCTGGGGTACTTGCAATTCCTCTAATTGTTGCATCAAACGTGCATTCTTCTTCCTTTC 660
consensus_11025#3 ---------------CAATTCCTCTAATTGTTGCATCGAACGTGCATTCTTCTTCCTTTC 45
consensus_11025#6 ---------------------------------AAACGAAAGTGCGATTAAGTATTTCAT 27
consensus_11025#4 -------TGAGCTATTGTTGTGCCCGGTGGCACTTCTGATTGGACGAGATATTTTTAATT 53
consensus_11025#1 TTTTCTTAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGG--TTTTTGAACCA 695
consensus_11025#5 ------------------ATGTAATTGTTGTTGAAGATCATGTGAGG--TTTTTGAACCG 40
consensus_11025#2 TTTTCTTAAATTTAAATCATGTAATTGTTGTTGAAGATCATGTGAGG--TTTTTGAACCA 102
consensus_11025#0 GTTTTCAAGATCTTCCCGCAAAATC-GATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGG 719
consensus_11025#3 GTTTTCAAGATCTTCCCGCAAAATCCGATATTTCCTGTTTTAGGGAGTTCTCTTCTTTGG 105
consensus_11025#6 ATGCATTGTATCCTTGTTCCCAGTT-GAGGTTCCTAGATTTAAAA----CCTATGGACGA 82
consensus_11025#4 CGCTATTGAATCTATTTCGATTAATAGAAAAGCTTTGAAAAAAGAAACATTCATTCACTG 113
* *
consensus_11025#1 ATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTG 755
consensus_11025#5 ATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTG 100
consensus_11025#2 ATCGATTTAGTTTGAAGATTATTGGTGGACGCTTCCAAGGTTGTAGCTGAGCTATTGTTG 162
consensus_11025#0 TTTTATTT--TGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACAC-ATTACCA 776
consensus_11025#3 TTTTATTT--TGTGGTAAATAATCATCAGAATAGCCAGCAGAACACGTACAC-ATTACCA 162
consensus_11025#6 ATTCGTCC--TCT--TAATTAGTGAGCCAA--AGCC------------------------ 112
consensus_11025#4 AATGATTA--GTAAACAGATACAGATCTATATGCCGAACAAAATTTACTCAC-AATATTG 170
* ** *
consensus_11025#1 TGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCA 815
consensus_11025#5 TGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCA 160
consensus_11025#2 TGCCCTGTGGCACTTCTTATTGGACGAGTTATTTTTAATTCGCTATTGAATGTTTCTTCA 222
consensus_11025#0 GACGATATTGCAAGTCT----------------------------------TTATTAATT 802
consensus_11025#3 GACGATATTGCAAGTCTGAAAAAATAGAAGTATACGAAATATCCACAACCTTTATTAATT 222
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 TGA---AGAATATTCACAAAGGGATATGTTGTGGTAGAACGAATGTCGAAGAAAGTGTAA 227
consensus_11025#1 TTTTT-TAATGAACCA-CGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATT 873
consensus_11025#5 TTTTT-TAATGAACCA-CGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTACATT 218
consensus_11025#2 TTTTT-TAATGAACCA-CGTGTAGGTGAATGCTTTGTATTGTTTGTATTTATTTTATATT 280
consensus_11025#0 CTTTT-CAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTG 861
consensus_11025#3 CTTTT-CAAGGACTCAATCTCTTGATGCAAACCTTTCAACATGGACTCATGCTGCTTTTG 281
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 CTTTTGCGATTAATTTACGGCTAGCT--ACTATTCATATCTTTATTGTGTAATTAGTAGA 285
consensus_11025#1 GTTCATTACTCAGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATGCAGGTAATCGAA 933
consensus_11025#5 GTTCATTACTCTGTGAAGCTTGAATAAGTGGTTTTCTAAGACTTAATACAGGTAATCGAA 278
consensus_11025#2 GTTCATTACTCAGTGAAGCTTGAATAAGTGGTCTTCTAAGACTTAATGCAGGTAATCGAA 340
consensus_11025#0 TAGGAAAGTTATGCTGTTGTCTAGTAGGACTTTACGACTGTCGTCATCTAGTTTAGGAGG 921
consensus_11025#3 TAGGAAAGTTATGCTCTTGTCTAGTAGGACTTTACGACTGTCGTCATCTAGTTTAGGAGG 341
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 TCACTGCATTACTGTATGTCTATATTCGTCATACTCGTAGCTTCGAATGACTCA------ 339
consensus_11025#1 TCAAATGATGAAT-TA-ATCAA-------------------------------------- 953
consensus_11025#5 ATGG-TAATAAGTGCG-CTCAGGATTTT-------------------------------- 304
consensus_11025#2 ATGG-TAATAAGTGTGTATTGATTAATTCATCATTTGATTCGATTATTTCCTCTTCTTGT 399
consensus_11025#0 GCTGATAACAGGTGCTTCTCTTTTACTGGAAGGGAACATAATAGTCTCAACTTTCTTATC 981
consensus_11025#3 GCTGATAACAGGTGCTTCTCTTTTACTGGAAGGGAACATAATAGTCTCAACT-------- 393
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 ------------------------------------------------------------
consensus_11025#5 ------------------------------------------------------------
consensus_11025#2 TTTTCAAAAACATGTTCATTATCATACGAATGAAGAATACTTCGTTTTGTCAATAAATTA 459
consensus_11025#0 TCCAAGTGCATCAGTTTTGGTAGGAAAATTATTAAGAACAATCATAGTCAAGAATTCAGT 1041
consensus_11025#3 ------------------------------------------------------------
consensus_11025#6 ------------------------------------------------------------
consensus_11025#4 ------------------------------------------------------------
consensus_11025#1 ------------------------------------------
consensus_11025#5 ------------------------------------------
consensus_11025#2 T----------------------------------------- 460
consensus_11025#0 CTACGGAAACGAAAGTGCGATTAAGTATTTCATATGCATTGT 1083
consensus_11025#3 ------------------------------------------
consensus_11025#6 ------------------------------------------
consensus_11025#4 ------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||