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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11104#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 29 consensus length = 1250 fasta sequence
[GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC-TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCA-TTAGATGTTATANAATCATTTGAATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT-ATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA]
[+] EMBL CD164048 [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAA ]
[+] EMBL CD163903 [GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAA ]
[-] EMBL CD163787 [ CGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACGGCAAATGCCAAAGAAGAAAGTCGAAGATAAAAAAA ]
[+] EMBL CD186870 [ CGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAA ]
[+] EMBL AI975882 [ TATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGA ]
[+] EMBL CD131734 [ TTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAA ]
[+] EMBL CD156601 [ TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAGGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTCTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCA TTAGATGTTATANAAT ]
[+] EMBL CD156751 [ TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTNTATCTCACCA TTAGATGTTATANNAT ]
[+] EMBL CD156752 [ TATCAATTTCGTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGTCAAAGAAGAAAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCCCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTNTATCTCACCANTTAGATGTTATA AAT ]
[-] EMBL CD182923 [ nTCGTATTNCCATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGANAGTCAAAGATAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGA ]
[-] EMBL CD183051 [ GGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCCATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGA ]
[+] EMBL CD143478 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143485 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143519 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGTATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143520 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATTAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143530 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143549 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGGCGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143570 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTCGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143512 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAATACAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTCGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATCTTCAAAAAGAGTAAACCACAAGATCATGCGTTAGCTGCACATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143490 [ TTATAGTGACAGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTGTTGATAAAGTTTGCTCACCAATCGATCTAATGGAAGAGAAGATAACGGAAACTCGAATTAACGCAGTACGTTCTTTAATTGAATTTTTTCGTTCACATCATTTCTGTCTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTATCAAAAAGAGTAAACCACAAGATCAGGCATTAACTGCAGATCTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143429 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGAAGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTCTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143439 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD143460 [ TTATAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTAC ]
[+] EMBL CD183021 [ TCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGNTCGAGAGGTNNNCTTCTATNNTAGAGCCTGTCATTCGTGATACac ]
[+] EMBL CD092782 [ TTCATCCGTTGACGTTGAGGATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTA ]
[-] EMBL CD157068 [ ATGGATTGGCCTTGGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGAAACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTTGGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAAGAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTCCAGCCATAGCTCATTGCAATACTGCAGTCTTTGTCAGGCTATTGTGACTTTATC ]
[+] EMBL CD092069 [ GAGCGTCTTCAGCCATAGCTC TTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCG TTAGATGTTATAAAATCATTTGAATTTGTATACAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT ATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGGAGTTTTAACGTTATC ]
[-] EMBL CD135253 [ TTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTTTGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTAGAg ]
[+] EMBL BG931871 [ GTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGTTGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGTGCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGATCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA]
consensusID : consensus_11104#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 660 fasta sequence
[CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC]
[+] EMBL CD083206 [CCAGAGCCAANTTTCGGCACGAGGCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAATTAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCATTCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACTGCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC]
[+] EMBL CD180572 [ ggCACCATTAGATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTGAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGG ]
[+] EMBL CD132636 [ ATGTTATAAAATCATTTGAATTTGTATTCAGAAGCTCCACTTCAAAAATCGAAGCTGATATTTTTGATCTCTATGTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGTAATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAATGTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCCTTTATGAACGAATTCGAAACGAAGTTGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGCTACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCGGGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAA ]
consensusID : consensus_11104#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence
[TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAACGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCTGATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC]
[+] EMBL CD143440 [TTATAAAGACATGCATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTTGTTGATAAAATATGCTCAGCAATCGATCTAATGGAATATAAGAGAACGGAAACTCGAATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCATTTCTGATTGGATGGCTCTCGGAACTACACTGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGTTAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11104#0 GCGGTGGAAGTGCGTTATGAGTGACTTCGTGTTCGTCCTTCGGAGGTTGATATCAATTTC 60
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GTATTCCAATCGAAAAGGTATAACTATCTAACAGCAAATGCCAAAGAAGAAAGTCAAAGA 120
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 TAAAAAAATCCTGGTCGATCAGTCGGATCCTTTGGAGTTGGCAAGTGTTGTTAGCCTTTA 180
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 TAGTGACGGCAGCGAGACTCCAACAGCTTCATCCGTTGACGTTGAGGATGGATTGGCCTT 240
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GGAATCGCTTCTTGATAAAGTTTGCTCAGCAATCGATCTAATGGAAGAGAAGAGAACGGA 300
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 AACTCGAATTAACGCAATACGTTCTTTAATTGAGTTTTTTCGTTCACATCATTTCTGTTT 360
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GGATGGCTCTTGGAACTACACTGAAACTCTGATAACCAGTATTGAAAATATTTTCAAAAA 420
consensus_11104#1 ----------------------------------------CCAGAGCCAANTTTCGGCAC 20
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GAGTAAACCACAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT 480
consensus_11104#1 GAG------GCAAGATCAGGCATTAGCTGCAGATTTACTGACCGTATTCTCTCTACAAAT 74
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT 540
consensus_11104#1 TAATCCACACGAAGTTCCTATATGGTTCGAGAGGTTCTTTCCTATTTTAGAGCCTGTCAT 134
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT 600
consensus_11104#1 TCGTGATACCACCAAAAATCCTAAATTCAGAGCGTCTTCAGCCATAGCTCTTGCAGTACT 194
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATANAATCATTTGA 660
consensus_11104#1 GCAGTCTTTGTCAGGCTATTGTGACTTTATCTCACCATTAGATGTTATAAAATCATTTGA 254
consensus_11104#2 --------------------------------------------TTATAAAGACAT--GC 14
***** * *** *
consensus_11104#0 ATTTGTA-TACAGAAGCTCCACT--TCAAAAATCGAAGCTGAT--ATTTTTGATCTCTAT 715
consensus_11104#1 ATTTGTA-TTCAGAAGCTCCACT--TCAAAAATCGAAGCTGAT--ATTTTTGATCTCTAT 309
consensus_11104#2 ATCGATACTCCAACAGCTTCATCCGTTGACGTTTAGGATGGATTGACCTTGGAATCGCTT 74
** ** * ** **** ** * * * *** * ** ** *
consensus_11104#0 GTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT 775
consensus_11104#1 GTTGCAGCACTTAAAGCCTGGACACTAATTTACACTTTTCTATCACCCTACGACTCTGGT 369
consensus_11104#2 GTTGATAAAAT--ATGCTCAGCAATCGATCTAATGGAATATAAGAGAACG-GAAACTCGA 131
**** * * * ** * * ** ** * ** * ** ** *
consensus_11104#0 A-TGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAAT 834
consensus_11104#1 AATGTTGGGAAAGCTGTGCTTCCTGTTTTACTATCTTTACTTCAGTGTTCAAACGTGAAT 429
consensus_11104#2 ATTAACGCATTACTTTCTTTAATTGGGTTTTATCGTTCACATCAT--TTCTGATTGGATG 189
* * * * * * ** ** ** ** *** *** * **
consensus_11104#0 GTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCG-AAACGAAGT 893
consensus_11104#1 GTTCGTATAATAGCAGGTGAAGCTTCAGCAGTCATTTATGAACGAATTCG-AAACGAAGT 488
consensus_11104#2 GCTCTCGGAACTACAC-TGAAACTCTGATAACCAGTATTGAAGATATTTTCAAAAAGAGT 248
* ** ** ** **** ** * ** * **** *** *** ***
consensus_11104#0 TGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGC 953
consensus_11104#1 TGATGATAAATTCAAAGGTCCCTATTACAGCGATCTTGTCCGTTTACTTGGTGAGCTGGC 548
consensus_11104#2 TAACCACAAGATCA--GGCATTAGCTGCAGATTTACTGACCGTATACTCTCTAC------ 300
* * * ** *** ** * *** * ** **** **** *
consensus_11104#0 TACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCG 1013
consensus_11104#1 TACAGATAGCTCAAAAAGCCGCTCTAAAAACGATCTCAAGAAGCAACGTCATTCCTTTCG 608
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGAAACATCGATAAACTTTGGCGT 1073
consensus_11104#1 GGAACTTGTGGAGGCCGTAGTGCACAGTGACTACCCTGGAACATCGATAAAC-------- 660
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 TGAAGTTTTAACGTTATCATCTTGCACTGGACACTTTTATTATAACTTCTTGTGCTCAGT 1133
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 GCTAGGAAGTGGATTGAGGCATCATCTTCGTGAAAACCCGTACATTCGTAATCTTTTTGA 1193
consensus_11104#1 ------------------------------------------------------------
consensus_11104#2 ------------------------------------------------------------
consensus_11104#0 TCTCGGCTTACCATCGTTGCTACAGCAGAATAGAGCCAACCACCGGGTCCTCAAAGA 1250
consensus_11104#1 ---------------------------------------------------------
consensus_11104#2 ---------------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||