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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 25 consensus length = 1085 fasta sequence
[CGTTTCAGTTTCGGTTGGGGTGAGGATGCAGTTAACAAGATATGTTAAGATATGTGAGACTGAGGATGACCAGCCAATCGAGGTGCCTCTGGAAGACGATGACACTCTTTTACTATCAACAT-TAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG-TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA-TGTACGGACTTGATAGTGTTAAACTAGCCTTGGCGGCCAGATGAAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA-ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA-TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTG]
[-] EMBL CD180918 [CGTTTCAGTTTCGGTTGGGGTGAGGATGCAGTTAACAAGATATGTTAAGATATGTGAGACTGAGGATGACCAGCCAATCGAGGTGCCTCTGGAAGACGATGACACTCTTTTACTATCAACAT TAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTAT ]
[+] EMBL CD112953 [ ATGACACTCTTTTACTATCAACATCTAACTGCTCAGTTCCCAGATTGCACGGCACTTAAGTACAGGTCTGGCGACTCATGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAACGGCATGGAAACACTTTT ]
[+] EMBL CD112960 [ ATGACACTCTTTTACTATCAACAT TAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAGTGGCATGGATACACTTTTTG GTGGGTCTTTCCCAAATG ]
[+] EMBL CD144272 [ TGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTT ]
[-] EMBL CD119176 [ TGCTCAGTTCCCAGATTGCACGGCACTTAAGTACAGGTCTGTCGACTCAGGGTGCTATCGTGCTGTTCGTATTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTCTTTGCTTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATTCAAAAACACTGTACGGACTTGATAGTGTTAAACTAGCCTTGGCGGCCAGATGAAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAAGACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCACTTGAAAAT ]
[-] EMBL CD119095 [ TGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ]
[+] EMBL CD187769 [ CTGGCGACTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGGCCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTT ]
[-] EMBL BG932081 [ ggttTCAGGGTGCTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ]
[-] EMBL CD182162 [ TTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ]
[-] EMBL CD182133 [ TTCCTCCCACTGATGGACAATGGCATGGAAACACTTTTTG TTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAGACTCGTTAGATTCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACA TGTACGGACTTGATAGTGTTA ]
[+] EMBL CD148025 [ GAAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGC ]
[-] EMBL CD097479 [ AAGATACTTTACGTGACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGT ]
[+] EMBL AI975860 [ GACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTC ATCGTTTGCCTTCATTACGTTCGATGACCNCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCA ]
[-] EMBL CD119116 [ ACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTC ]
[-] EMBL CD157065 [ ACTACTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGA ]
[-] EMBL CD115607 [ CTTTAGCCAGTACGGCGACCTTGTCATGATCCAGATCAA ACGAGACCCAGTAACCCAGCAAAGCAAGGGATATGGATTTATCCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTGGCTGAACGACATACCA TTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCATTCATTACGTTCGATGCCCCCCCCCCCGCAGATTGTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCCTATAAGCGTTGGTTTTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACA ]
[+] EMBL CD158697 [ GTCCGCATTCCTATATCAAAGATGGAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTGCGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTA ]
[-] EMBL CD144960 [ GGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATTAGTCCCGAAGCTCTGCGTCAGCATTTCTCCCAATATGGAAGAGTGTGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGAAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGG ]
[+] EMBL CD158836 [ CTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATC ]
[+] EMBL CD158743 [ CTGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATC ]
[-] EMBL CD158544 [ TGCGTCAGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCGCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCC ]
[-] EMBL CD141769 [ GTGATGTTTTCATACCGAAACCCTTTCGATCGTTTGCCTTCATTACGTTCGATGACCCCGAGGTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTG]
[-] EMBL CD193830 [ ATGACNNCGAGGTCGCAGCTTCTTGTTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTAC ]
[-] EMBL BG932871 [ GTCGCAGCTTCTTTGTTGGGCAAGGACCAAGAAATTCAAGGTGTTCGTGTAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACCTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCCACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACG ]
[-] EMBL CD195535 [ ATTCAAGGTGTTCGTATAAGCGTTGGTTCTGCAGTTCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTACC ]
consensusID : consensus_11116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 751 fasta sequence
[TATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTGATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAATTGGTTTTTCATTATTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATA]
[-] EMBL CD121018 [TATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATA ]
[+] EMBL CD163007 [ GTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATG ]
[-] EMBL CD181104 [ TATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGC ]
[-] EMBL CD180809 [ TATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAAAGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGCTGTTTTAGCAGCAGAATATACTCGTGTTCATCATACCCGAAACTCAGGTACCCCAGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGC ]
[-] EMBL CD137025 [ CCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTGATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAATTGGTTTTTCATTATTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATA]
consensusID : consensus_11116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 610 fasta sequence
[AGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAAATTGGTTTTTCTCCTTTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATAATGCTGAGATATGAGTGATCAGACTGTTTGACATATAAATTTTGGTGCTGTCGCGTTTCAGAAACCGTTGCTGTGTGGTGAAAGCATCAGAACATATGTTGATGTCTCTAAA]
[-] EMBL CD077940 [AGCAAATGGGCAACCAGAATACAACGGAGTATCTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAATATCCTAAGTAATCCGAATGTAGTAGCCGCCATAGTTAGCGCTGCCACTGGAGCTGGCAATACTTCTATGCTTGGCAATTCTGGTGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAAATTGGTTTTTCTCCT ]
[+] EMBL CD069504 [ tacTACTTCTATGCTTGGCAATTCTGGTGCACTCTAATACAATGAATGGATTCAAGTTATTCAATACTCAAATTCTGCATTTCTTACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTTTGTATCACTGTTGCCCGAACTAAATGGGTTATGTCGATGTGTTGGTAAAAG AATTGGTTTTTCATTATTAAACCAACTGTGTATTTGTTTGGTTCCGTGTGTTGTGAATCGGTGGTTCTTCCAGGGTAAATGTACTTTTATTGTACGACTGTTAGTAGTGTGGTAAAAGCTTGCGTGTTTCTTTGCATACTGATATCAGTCGTGCGATGTTATCCGTGTACTTTGTATGAACGTTATGGTACATAATGCTGAGATATGAGTGATCAGACTGTTTGACATATAAATTTTGGTGCTGTCGCGTTTCAGAAACCGTTGCTGTGTGGTGAAAGCATCAGAACATATGTTGATGTCTCTAAA]
consensusID : consensus_11116#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence
[TGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCAAGTACATTTCACGTTGTTAAAATTTTACTTAGGCGATAATATCTTTTTTCTATTTAAATCAGAGATGTGACTTAGTTATCAAGCACAATTTTAGATAATTAGCTTTAAAGCACACTTTATATGTCTGTACTGATGATGCTAAACCAAAGTCTTAACCTGGAACCTGTTGATCGAAAGCTGAGTGCTATAACCGTAAGTCACTACTCAGCTACCATTTAAGGATATCGTTCCATTTTCTATAGACCTGCGATTTTGAGAAACATTCATTCATAAAACAGATTTTACTTACCATTGGTATTCGTTTGTTCACTATACAGTAGGTGTAATGGAGTTTTACCACTCATTTCTGTTTTTAGCAAATGAATTCCAGTATCATGAATACTTTACTTAAATTTGACATTAATCATTACTGATTGCAACACAGGTTATTGTATAAGTGGATCAGAACTAACTACACAGATTNTTTTGTAAAATAAATAAAATACCAGAACATTCAAGTTACTAAACTT]
[+] EMBL CD096655 [TGCAGATCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGCAAGTACATTTCACGTTGTTAAAATTTTACTTAGGCGATAATATCTTTTTTCTATTTAAATCAGAGATGTGACTTAGTTATCAAGCACAATTTTAGATAATTAGCTTTAAAGCACACTTTATATGTCTGTACTGATGATGCTAAACCAAAGTCTTAACCTGGAACCTGTTGATCGAAAGCTGAGTGCTATAACCGTAAGTCACTACTCAGCTACCATTTAAGGATATCGTTCCATTTTCTATAGACCTGCGATTTTGAGAAACATTCATTCATAAAACAGATTTTACTTACCATTGGTATTCGTTTGTTCACTATACAGTAGGTGTAATGGAGTTTTACCACTCATTTCTGTTTTTAGCAAATGAATTCCAGTATCATGAATACTTTACTTAAATTTGACATTAATCATTACTGATTGCAACACAGGTTATTGTATAAGTGGATCAGAACTAACTACACAGATTNTTTTGTAAAATAAATAAAATACCAGAACATTCAAGTTACTAAACTT]
consensusID : consensus_11116#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence
[TTTTTTTTTTTTTTTNTAAAAATGAAAAACCAATTCTTTTACCAACACATTGACATAACCCATTTAGTTCGGGCAACAGTGATACAAAACAAAGACTCAGTGGAGCCAAAATTAAGGAGGAAGTAAGAAATGCAGAATTTGAGTATTGAATAACTTGAATCCATTCATTGTATTAGAGTGCATGAGAATTATGCAGTCCGATATTGGCGAAAGTATATCTAGGTTGGTGTGTTTTCAATTCGTTAGAATGATCTGCAAACAAACTTACACCAGAATTGCCAAGCATAGAAGTATTGCCAGCTCCAGTGGCAGCGCTAACTATGGCGGCTACTACATTCGGATTACTTTAAGGATATCATCCGT]
[+] EMBL AI395541 [TTTTTTTTTTTTTTTNTAAAAATGAAAAACCAATTCTTTTACCAACACATTGACATAACCCATTTAGTTCGGGCAACAGTGATACAAAACAAAGACTCAGTGGAGCCAAAATTAAGGAGGAAGTAAGAAATGCAGAATTTGAGTATTGAATAACTTGAATCCATTCATTGTATTAGAGTGCATGAGAATTATGCAGTCCGATATTGGCGAAAGTATATCTAGGTTGGTGTGTTTTCAATTCGTTAGAATGATCTGCAAACAAACTTACACCAGAATTGCCAAGCATAGAAGTATTGCCAGCTCCAGTGGCAGCGCTAACTATGGCGGCTACTACATTCGGATTACTTTAAGGATATCATCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11116#1 ------------------------------------------TATGGGGGTATGGTTCAG 18
consensus_11116#2 ------------------------------------------------------------
consensus_11116#0 CGTTTCAGTTTCGGTTGGGGTGAGGATGCAGTTAACAAGATATGTTAAGATATGTGAGAC 60
consensus_11116#3 ------------------------------------------------------------
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 AATAACCGATATGGAGGCCAACATTCTTCCGGTAAA-GGTGGAAGTCGAAACGGATCAAT 77
consensus_11116#2 ------------------------------------------------------------
consensus_11116#0 TGAGGATGACCAGCCAATCGAGGTGCCTCTGGAAGACGATGACACTCTTTTACTATCAAC 120
consensus_11116#3 ------------------------------------------------------------
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 GGGGGGAA-TGAATCCAGCAGCTGCA---GCCGCTGCTGCTGTTTTAGCAGCAGAA---- 129
consensus_11116#2 ------------------------------------------------------------
consensus_11116#0 ATTAACTGCTCAGTTCCCAGATTGCACGGGACTTAAGTACAGGTCTGGCGACTCAGGGTG 180
consensus_11116#3 ------------------------------------------------------TGCAGA 6
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 -TATACTCGTGTTCATCATACCCGAAAC---TCAGGTACCCCAGCAAAT---GGGCAACC 182
consensus_11116#2 ------------------------------------------AGCAAAT---GGGCAACC 15
consensus_11116#0 CTATCGTGGTGTTCGTCTTTTGGATGACCGTTTATTTCCTCCCACTGAT---GGACAATG 237
consensus_11116#3 TCATTCTAACGAATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCA 66
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 AGAATACAACGGA-GTAT-CTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAAT 240
consensus_11116#2 AGAATACAACGGA-GTAT-CTGTGGATTCTTCAAATTCTGCTGCACTTGCTACGATGAAT 73
consensus_11116#0 GCATGGAAACACT-TTTTGTTGTGTCTTTCCAAAATGTTCCAAGAGGAAAGCAGATGAAG 296
consensus_11116#3 TAATTCTCATGCAAGTACATTTCACGTTGTTAAAATTTTACT-TAGGCGATAATATCTTT 125
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 ATCCTAAGTAA-TCCGAA-TGTAGT--AGCCGCCATAGTTAGCGCTGCCAC-TGGAGCTG 295
consensus_11116#2 ATCCTAAGTAA-TCCGAA-TGTAGT--AGCCGCCATAGTTAGCGCTGCCAC-TGGAGCTG 128
consensus_11116#0 ACTCGTTAGAT-TCCAAAATGAAGCTAAAACGTTTTGATAAAAAAACATGTACGGACTTG 355
consensus_11116#3 TTTCTATTTAAATCAGAGATGTGACTTAGTTATCAAGCACAATTTTAGATAATTAGCTTT 185
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 GCAATACTT--CTATGCTTGGCAATTCTGGTGTAAGTTTGTTTGCAGATCATTCTAACGA 353
consensus_11116#2 GCAATACTT--CTATGCTTGGCAATTCTGGTG---------------------------- 158
consensus_11116#0 ATAGTGTTAAACTAGCCTTGGCGGC-CAGATGAAGATACTTTACGTGACTACTTTAGCCA 414
consensus_11116#3 AAAGCACAC---TTTATATGTCTGTACTGATGA-----TGCTAAACCAAAGTCTTAACC- 236
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 ATTGAAAACACACCAACCTAGATATACTTTCGCCAATATCGGACTGCATAATTCTCATGC 413
consensus_11116#2 -----------------------------------------------------------C 159
consensus_11116#0 GT-------ACGGCGACCTTGTCATGATCCAGATCAAACGAGACCCAGTAA--CCCAGCA 465
consensus_11116#3 --------------------------------------TGGAACCTGTTGA----TCGAA 254
consensus_11116#4 ------------------------------------------------------TTTTTT 6
consensus_11116#1 ACTCTAATACAATGAATGGAT--TCAAGTTATTCAATA-----CTCAAATTCTGCATTTC 466
consensus_11116#2 ACTCTAATACAATGAATGGAT--TCAAGTTATTCAATA-----CTCAAATTCTGCATTTC 212
consensus_11116#0 AAGCAAGGGATATGGATTTAT--CCGCTTCGCTGATTATACGGCACAAGTTATGTGTTTG 523
consensus_11116#3 AGCTGAGTGCTATAACCGTA------AGTCACTACTCA---GCTACCATTTAAGGATATC 305
consensus_11116#4 TTTTTTTTTNTAAAAATGAAAAACCAATTCTTTTACCAACACATTGACATAACCCATTTA 66
* * * * * * * *
consensus_11116#1 TT------ACTTCCTCCTTGATTTTGGCTCCACTGAGTCTTTGTTT-TGTATCACTGTTG 519
consensus_11116#2 TT------ACTTCCTCCTTAATTTTGGCTCCACTGAGTCTTTGTTT-TGTATCACTGTTG 265
consensus_11116#0 GCTGAACGACATACCATTGAAAATCGACAGTGCGATGTCCGCATTCCTATATCAAAGATG 583
consensus_11116#3 GTT---CCATTTTCTATAGACCTGCGATTTTGAGAAACATTCATTCATAAAACAGATTTT 362
consensus_11116#4 GTT------CGGGCAACAGTGATACAAAACAAAGACTCAGTGGAGCCAAAATTAAGGAGG 120
* * *
consensus_11116#1 CC---CGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAA-TTGGTTTTTCATTATT 575
consensus_11116#2 CC---CGAACTAAATGGGTTATGTCAATGTGTTGGTAAAAGAAATTGGTTTTTCTCCTTT 322
consensus_11116#0 GAGGGTGACCGTCAAGAAGTTTCCCGAAAGGTTCACATTGGAAGGTTAACAGAAGATATT 643
consensus_11116#3 ACTTACCATTGGTATTCGTTTGTTCACTATACAGTAGGTGTAA--TGGAGTTTTACCACT 420
consensus_11116#4 AAGTAAGAAATGCA-GAATTTGAGTATTGAATAACTTGAATCCATTCATTGTATTAGAGT 179
* * * * *
consensus_11116#1 AAACC---AACTGTGTA-TT-TGTTTGGTTCCGTGTGTTGT-GAATCGGTGGTTCTTCCA 629
consensus_11116#2 AAACC---AACTGTGTA-TT-TGTTTGGTTCCGTGTGTTGT-GAATCGGTGGTTCTTCCA 376
consensus_11116#0 AGTCCCGAAGCTCTGCG-TC-AGCATTTCTCCCAATATGGAAGAGTATGTGATGTTTTCA 701
consensus_11116#3 CATTT-----CTGTTTT-TAGCAAATGAATTCCAGTATCAT-GAATACTT--TACTTAAA 471
consensus_11116#4 GCATGAG-AATTATGCAGTCCGATATTGGCGAAAGTATATCTAGGTTGGTGTGTTTTCAA 238
* * * * * * * * ** *
consensus_11116#1 GGGTAAATGTACTTTTATTGTACGACTGTTAGTA-GTGTGGTAA----AAGCTTGCGTGT 684
consensus_11116#2 GGGTAAATGTACTTTTATTGTACGACTGTTAGTA-GTGTGGTAA----AAGCTTGCGTGT 431
consensus_11116#0 TACCGAAACCCTTTCGATCGTTTGCCT-TCATTACGTTCGATGACCCCGAGGTCGCAGCT 760
consensus_11116#3 TTTGACATTAATCATTACTGATTGCAACACAGGTTATTGTATAAG---TGGATCAGAACT 528
consensus_11116#4 TTCGTTAGAATGATCTGCAAACAAACTTACACCAGAATTGCCAAGCATAGAAGTATTGCC 298
* * *
consensus_11116#1 TTCTTTGCATACTGATATCAGTCGTGCGA-TGTTATCCGTGTAC---TTTGTATGAACGT 740
consensus_11116#2 TTCTTTGCATACTGATATCAGTCGTGCGA-TGTTATCCGTGTAC---TTTGTATGAACGT 487
consensus_11116#0 TCTTTGTTGGGCAAGGACCAAGAAATTCA-AGGTGTTCGTATAAGCGTTGGTTCTGCAGT 819
consensus_11116#3 AACTACACAGATTNTT-TTGTAAAATAAA-TAAAATACCAGAAC--------ATTCAAGT 578
consensus_11116#4 AGCTCCAGTGGCAGCGCTAACTATGGCGGCTACTACATTCGGAT-----TACTTTAAGGA 353
* * *
consensus_11116#1 TATGGTACATA------------------------------------------------- 751
consensus_11116#2 TATGGTACATAATGCTGAGATATGAGTGATCAGACTGTTTGACATATAAATTTTGGTGCT 547
consensus_11116#0 TCCCAAGCTCCCTCCTTCTGCTCGTCAAAGTAACACTAATAATCAACGAATCCCGGTTAC 879
consensus_11116#3 TACTAAACTT-------------------------------------------------- 588
consensus_11116#4 TATCATCCGT-------------------------------------------------- 363
* *
consensus_11116#1 ------------------------------------------------------------
consensus_11116#2 GTCGCGTTTCAGAAACCGTTGCTGTGTGGTGAAAGCATCAGAACATATGTTGATGTCTCT 607
consensus_11116#0 CTCGATGCAAGCTGCTCTTCAGTCAACAATGATGGGAACTCAACAATGGGGTGCTTGGCC 939
consensus_11116#3 ------------------------------------------------------------
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 ------------------------------------------------------------
consensus_11116#2 AAA--------------------------------------------------------- 610
consensus_11116#0 ACCAGCTTATGGGGGTATGGTTCAGAATAACCGATATGGAGGCCAACATTCTTCCGGTAA 999
consensus_11116#3 ------------------------------------------------------------
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 ------------------------------------------------------------
consensus_11116#2 ------------------------------------------------------------
consensus_11116#0 AGGTGGAAGTCGAAACGGATCAATGGGGGGAATGAATCCAGCAGCTGCAGCCGCTGCTGC 1059
consensus_11116#3 ------------------------------------------------------------
consensus_11116#4 ------------------------------------------------------------
consensus_11116#1 --------------------------
consensus_11116#2 --------------------------
consensus_11116#0 TGTTTTAGCAGCAGAATATACTCGTG 1085
consensus_11116#3 --------------------------
consensus_11116#4 --------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||