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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_11204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 28 consensus length = 905 fasta sequence
[TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATACCTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTATTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTTGTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT--GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA-CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGCAACTA]
[+] EMBL CD148325 [TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATACCTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTATTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTTGTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGA ]
[-] EMBL CD078504 [ AGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG ]
[+] EMBL CD072976 [ AGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGAAATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCATTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACAGGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAA ]
[+] EMBL CD097483 [ TAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD097482 [ TAGAAAATAACTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTA ]
[-] EMBL BF440143 [ TCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCNCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAAC ]
[+] EMBL CD141771 [ CTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCT ]
[-] EMBL CD130724 [ CAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAAC ]
[-] EMBL CD163035 [ AACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGCCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTG ]
[-] EMBL CD132742 [ TTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCCGCAACTA]
[-] EMBL CD148130 [ ACC TTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGCCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT ]
[+] EMBL CD148059 [ CACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTGGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD147955 [ CACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[-] EMBL CD148078 [ ACGGACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC TTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTACCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAAC ]
[+] EMBL CD148174 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAGGATT GAGAATCACTAATTAATGATCCACAGTTGTATTACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD148042 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD147985 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD147984 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD097437 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGGATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[+] EMBL CD147974 [ ACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[-] EMBL CD148084 [ CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCGGACGTCCTAGTCACGACAAATTTG ]
[-] EMBL CD148082 [ CGAACTTTACCAGCGCGCGCAAGAGATCCATGGTCCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT ]
[-] EMBL SMRAP143 [ TACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTTATACCGGAACNACGACATCGACAGATGTGTCACTGGACAGAGATNCCCAAGATTGGGAGAATCACT ]
[+] EMBL CD148049 [ AGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTT ]
[-] EMBL BG930427 [ GAGATCCATGGACCTTACTTCCTAATGCCGG ACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAgaa ]
[-] EMBL CD148083 [ CTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAGCACGGGTATCAAACGACTTAACGAACACCTTCACGTTT ]
[-] EMBL CD148170 [ GTCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAACACCTTCATGTTT ]
[-] EMBL CD191944 [ TCACTGGACAGAGATGCCAAAGATT GAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGA CACGGGTATCAAACGACTTAACGAAC ]
consensusID : consensus_11204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 422 fasta sequence
[AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTCTG]
[-] EMBL CD084206 [AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGCCTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCTCGTCCGATTCTG]
[+] EMBL CD135151 [ CTACTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATT ]
[-] EMBL CD138949 [ TTGTACTGCATCCTACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC ]
[+] EMBL CD139070 [ ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ]
[+] EMBL CD139021 [ ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ]
[+] EMBL CD139022 [ ACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ]
[-] EMBL CD138968 [ CTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTTGCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATCGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAATC ]
[+] EMBL CD138963 [ ATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGATAGATGTGCCACTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAGTAGAAT ]
[+] EMBL CD134880 [ GTCGCTGGACAGAGATGCTAAAGATTGAGAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATT ]
consensusID : consensus_11204#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 260 fasta sequence
[CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACTTAACGAACACCTTCATGTTT]
[-] EMBL CD148092 [CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAACAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATTAATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAGTAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGACGACTTAACGAACACCTTCATGTTT]
consensusID : consensus_11204#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 218 fasta sequence
[ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT]
[+] EMBL CD138958 [ACTGCTTTGCTATGTGCTCGTCTCTGTTGAGGATAGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAACAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACTAATTAATGATCCACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTACTAGAAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 TANCGGTTTTTACACACAATTGCAATTATATATAAAGCGTTAAAAGGCTGAAGAGTATAC 60
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 CTTAACAACTGACCACAATGGAACTACACAGTATAATCAGATAACATTGTGATACTGTTA 120
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 TTAACTGCTTTTACAAACCCACTTAAGAAACAACTCACCACTCCTTCGGAAAAACCATTT 180
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 GTCGTTTATAGAATCTAGATTTTGGTGAGGTCCTTTTAACTTCGGGTTTTGATTCCATGA 240
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 AATAAACTTTTGGCAGACTAGAGATTACAACTAATGATAGCTGTTTCAATAACGGTGTCA 300
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 TTCGACACTGCTGGAATTCAGACAAACAGTACCCGAGATTACAACTTATGAAGATGAACA 360
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 ------------------------------------------------------------
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 GGATATTTTGATAAACTTGTGTTGGGGATGAAAAAACTTGGTACAAGATATAGAAAATAA 420
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 --------AAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC 52
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 CTTCCAACAAAAGGTTTATTCGACATTCACTTTAGGATGACTTTACATTGGAATTCGGGC 480
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC 112
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 CTCTTCTTCTTCCACCAGGTTGTTGTACAACTGCTACAAATCGCTTATTGTACTGCATCC 540
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT 172
consensus_11204#3 ------------------------ACTGCTTTGCTATGTGCTCGTC--TCTGTTGAGGAT 34
consensus_11204#0 TACGCTTAGCTCTGCCTCGTGGAGACTTCTTTTTTTCTTGTTTCTCGACCTTTGGGGTTT 600
consensus_11204#2 ------------------------------------------------------------
consensus_11204#1 GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 232
consensus_11204#3 AGCCGCGACCTGTATAGTGGCCCGCCAGAGATGCATGGACCTTACCTGCTAATGCCGGAA 94
consensus_11204#0 GCCCACGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 660
consensus_11204#2 -----CGAACTTTACCAGCGCGCGCAAGAGATCCATGGACCTTACCTCCTAATGCCGGAA 55
*** ** ** ** *** ****** ************** ************
consensus_11204#1 CAACGACATCGATAGATGTGTCACTGGACAGAGATGCTAAAGATTGAGAATCACT-AATT 291
consensus_11204#3 CAAAGACATCGACAGATGTGTCACTGGACAGAGATGCTAAAAATTGAAAATCACT-AATT 153
consensus_11204#0 CAACGACATCGACAGATGTGTCACTGGACAGAGATGCCAAAGATTGAGAATCACT-AATT 719
consensus_11204#2 CAACGACATCGAAAGCTGTGTCAATGGACAGAGATGACAAAGATTGAGAATCACTGAATT 115
*** ******** ** ******* ************ *** ***** ******* ****
consensus_11204#1 AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG 350
consensus_11204#3 AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAC 212
consensus_11204#0 AATGATC-CACAGTTGTATAACTGCAAACTATCCAGTGGTAAATTGTCCTTGTTGGCTAG 778
consensus_11204#2 AATGATCACACAATTGTATAAATGCAAACTATGCAGTGGTAGATTGTCCATGTTGGCTAG 175
******* **** ******** ********** ******** ******* *********
consensus_11204#1 TAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGAACGGGATCAACCT 410
consensus_11204#3 TAGAAT------------------------------------------------------ 218
consensus_11204#0 TAGAATCTTTAGATCTGCAGCAGTTGGGCAGTCATTTGTGTCTATGACACGGGTATCAAA 838
consensus_11204#2 TAGAATCTGTAGATGGACAGCAGATGGGCAGTCATTGGCGTGTATGACACGGGTATCAGA 235
******
consensus_11204#1 CGTCCGATTCTG------------------------------------------------ 422
consensus_11204#3 ------------------------------------------------------------
consensus_11204#0 CGACTTAACGAACACCTTCATGTTTCTCAAACAACCTAGTCACGCCAAATTTGTAAACCC 898
consensus_11204#2 CGACTTAACGAACACCTTCATGTTT----------------------------------- 260
consensus_11204#1 -------
consensus_11204#3 -------
consensus_11204#0 GCAACTA 905
consensus_11204#2 -------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||